Clone Sequence Records
BO10729.3prime Sequence
842 bp (792 high quality bases) assembled on 2006-04-19
> BO10729.3prime
ATGGTCTAGAAAGCTTGCGTTATTGTTAATTGCACTGCTGGCGGCCACTA
ACTCCGGAACGGTGGACGAGGCGGCACTGCTCTGACTGACGGTGCGGGCA
TGATCCACATGGTTTTGGGTCGGCGCCGCAGACGGAGCCGCTCCCGAGGC
TGCTGGCATCGATCCCGAAGCTTCTCCCGACTGCACTGGCGTGCCCTCGC
TCGCTCCGGATCCGTTTCCATTTCCGGGTACGGGCTCCACCGTGGGAAAG
ACGGGCGGCAAGGCAGGCGCGACCACGGGCGTCTGCACCATGGGTGTGGG
AGGCGAACGATTCGCTGGCAACTGATGAGCAGTGGCTCCGGTCATCTGCA
TGTGGTACTTGTAAATGTTCTCGGTGCTTTCGACAACACCTTGGGTAAGA
TTGAGGCTCCGCCCCTTGATGCCCGACTCCTTGGCCGGTGGGGACCACCA
GTTGAAGACGCGTCCCACCACAGGCACGTGGCGCAGGATGCCCTCCTGCC
AGAGCTTCTCCTCCGATTCGCGCTGCAGATCAGCGGTAACCGCCTCAATG
CCCTTTTTAACAATCTCCGACATGGTGTCCAATACCCGCGAGTTTTCCTG
GACGCTCTTGCCCACCGTGACCACCAAGTCTAACAACTCTTCGACCTCCG
TTTCATGGGTCACCATTCCGAATCGCACACAAATCAGACCATCGGTGCCT
TCGCCTAATGAAAAGGCATTGTCCGTGGATTTCAGGGCCTCCACCAGGTC
GATGTTCAGCTTGTTTAGCTCTGTTTTGGCCTGGTCCGTCAGCAGGGACT
CCCAGCCCTCGGGCACGAAGCGAACACCGCCCATGCCCGCCC
BO10729.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:09:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1486-PA | 2559 | CG1486-RA | 1733..2556 | 842..19 | 4120 | 100 | Minus |
| CG1486-PB | 2559 | CG1486-RB | 1733..2556 | 842..19 | 4120 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:20:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1486-RB | 3700 | CG1486-RB | 2127..2950 | 842..19 | 4120 | 100 | Minus |
| CG1486-RA | 3634 | CG1486-RA | 2061..2884 | 842..19 | 4120 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:20:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 21327061..21327400 | 358..19 | 1700 | 100 | Minus |
| X | 23542271 | X | 21326454..21326744 | 842..552 | 1455 | 100 | Minus |
| X | 23542271 | X | 21326801..21326998 | 554..357 | 990 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:20:22 has no hits.
BO10729.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:47:29 Download gff for
BO10729.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1486-PA | 1733..2559 | 15..842 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:03:52 Download gff for
BO10729.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1486-PB | 1733..2559 | 15..842 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 21:54:21 Download gff for
BO10729.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1486-RA | 2061..2887 | 15..842 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:38:49 Download gff for
BO10729.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1486-RA | 2061..2887 | 15..842 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:38:49 Download gff for
BO10729.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 21327061..21327403 | 15..358 | 99 | | Minus |
| X | 21326454..21326743 | 553..842 | 100 | -> | Minus |
| X | 21326803..21326996 | 359..552 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 21:54:21 Download gff for
BO10729.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 21197481..21197770 | 553..842 | 100 | -> | Minus |
| arm_X | 21197830..21198023 | 359..552 | 100 | -> | Minus |
| arm_X | 21198088..21198430 | 15..358 | 99 | | Minus |
BO10729.5prime Sequence
917 bp (787 high quality bases) assembled on 2006-04-19
> BO10729.5prime
GAAGTTATCAGTCGACATGTCAGCGGCTGGTAGATCGGTGGACGATCCCG
GCCAGAGCCCACTCGTAGACCAAGAGCCGGATCCGGGCCAATCAACGCCA
GCGGTGGCCGAAATCGCCGCTTCCAGTATTCGATCGGGCCTGGCGGAGCT
GGAGCTGCGATCTTCGCAGGTGCTGCAGCGCTTAGAGAACGTTAAGGTGT
CGACCACGCCGGAGAGCCCAAATCCCGTCGAGAACGAGGAAGAGGCTGGG
GAGCGGGTGACCAGCGAGGACCTCCTGCCAGCGAAGCATCGCGTGCCCTC
CGACATTCTTAAGTCGCTGGAGCAATTGGTTTCTTACACGGACAGCGACG
ATGATCCGGAGTTCCCGCTGCCCGCCCTGGATGACGTCTCCCACTTGGCT
CTCATATCGCACAGCATTGTGGCCTATTTGTCGCATCTGGACCGTCAGCA
ACTGCTCCGGGTGACGAACAGCATTTCCGGGGACGCCACCCGCTGGTTGG
GCACGCTGTTTCACTTTGCCCACCCGGCGAGCAGCTTCCATGCGGACAAT
GCAGACGCGGTGCTGCGTACGGTGCGACTGGCCATCGTCGCCAGGTGTCC
GGGGTACTTGGAGGGTGGCATACCCGCCCTGGCGCAGCCTACGTTTTACA
TCTCGGAGAATACGACGCCGATGAGGCTGCACTACGCATGCCGCCAGTTG
GGCATACCGCTGGAGGCTATTAAGGTCATTCCGGAGCACAGTCAGTCCGG
GACAATGGATGTGACGCTGCTGCAAAAGCAAATTCAGCAGGATGTGGGCA
ATAACAGGACTCCGCTGCTGGTGGTCGCCGACATTGGAGCCTCGTTGTGT
GGCTATGTGGACAACCTGCTCCGGCTGAGGGACGTATGCAAGGCGCACAA
CATGTGGCTGCACGCCA
BO10729.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:09:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1486-PA | 2559 | CG1486-RA | 1..901 | 17..917 | 4505 | 100 | Plus |
| CG1486-PB | 2559 | CG1486-RB | 1..901 | 17..917 | 4505 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:13:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1486-RB | 3700 | CG1486-RB | 394..1295 | 16..917 | 4510 | 100 | Plus |
| CG1486-RA | 3634 | CG1486-RA | 328..1229 | 16..917 | 4510 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:13:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 21324710..21325499 | 128..917 | 3950 | 100 | Plus |
| X | 23542271 | X | 21324460..21324571 | 16..127 | 560 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:13:51 has no hits.
BO10729.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:47:30 Download gff for
BO10729.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1486-PA | 1..900 | 17..916 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:03:53 Download gff for
BO10729.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1486-PB | 1..900 | 17..916 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:49:32 Download gff for
BO10729.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1486-RA | 328..1228 | 16..916 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:47:06 Download gff for
BO10729.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1486-RA | 328..1228 | 16..916 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:47:06 Download gff for
BO10729.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 21324460..21324571 | 16..127 | 100 | -> | Plus |
| X | 21324710..21325498 | 128..916 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:49:32 Download gff for
BO10729.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 21195487..21195598 | 16..127 | 100 | -> | Plus |
| arm_X | 21195737..21196525 | 128..916 | 100 | | Plus |
BO10729.complete Sequence
2590 bp assembled on 2007-11-02
GenBank Submission: FJ631859
> BO10729.complete
GAAGTTATCAGTCGACATGTCAGCGGCTGGTAGATCGGTGGACGATCCCG
GCCAGAGCCCACTCGTAGACCAAGAGCCGGATCCGGGCCAATCAACGCCA
GCGGTGGCCGAAATCGCCGCTTCCAGTATTCGATCGGGCCTGGCGGAGCT
GGAGCTGCGATCTTCGCAGGTGCTGCAGCGCTTAGAGAACGTTAAGGTGT
CGACCACGCCGGAGAGCCCAAATCCCGTCGAGAACGAGGAAGAGGCTGGG
GAGCGGGTGACCAGCGAGGACCTCCTGCCAGCGAAGCATCGCGTGCCCTC
CGACATTCTTAAGTCGCTGGAGCAATTGGTTTCTTACACGGACAGCGACG
ATGATCCGGAGTTCCCGCTGCCCGCCCTGGATGACGTCTCCCACTTGGCT
CTCATATCGCACAGCATTGTGGCCTATTTGTCGCATCTGGACCGTCAGCA
ACTGCTCCGGGTGACGAACAGCATTTCCGGGGACGCCACCCGCTGGTTGG
GCACGCTGTTTCACTTTGCCCACCCGGCGAGCAGCTTCCATGCGGACAAT
GCAGACGCGGTGCTGCGTACGGTGCGACTGGCCATCGTCGCCAGGTGTCC
GGGGTACTTGGAGGGTGGCATACCCGCCCTGGCGCAGCCTACGTTTTACA
TCTCGGAGAATACGACGCCGATGAGGCTGCACTACGCATGCCGCCAGTTG
GGCATACCGCTGGAGGCTATTAAGGTCATTCCGGAGCACAGTCAGTCCGG
GACAATGGATGTGACGCTGCTGCAAAAGCAAATTCAGCAGGATGTGGGCA
ATAACAGGACTCCGCTGCTGGTGGTCGCCGACATTGGAGCCTCGTTGTGT
GGCTATGTGGACAACCTGCTCCGGCTGAGGGACGTATGCAAGGCGCACAA
CATGTGGCTGCACGCCAGTGGCCACGGACTGGCCGCCTTGGTGTGCGCCC
AAAATCAGGGCCATGTGGAGGAGGTACTCCACTCGATGGCCCTGAATTTG
GGCAGCTGGCTGGGTGTGCCCAGTCTGCCCATCGTCCTGCTGCACCGTCC
GCTGCAGAACAGCGCTCTGAGTGCCTTCGAATCCGATCCCATACTGTCGC
GTCGTCTTAATGCCCTGTCCTTGTGGACCAGTTTGCAGGCGCTGGGCCGG
AAGGCGATTGCGGAGCGTCTGCATGTGGCCTTCCAGACGTGCAGTATTCT
CTTCGAGATTGCCTCCAAGTGTGAGGGCATCCGGGTGTTGAGCCATACTC
CAGGAGCGCAGACCGGAGCCTCTTTGTCGGACGTCATTCAGAGCCCCTTT
GATGTGCAGGCGCTTTTTGATGCCGCCGCCCCCGTGGTCGCCTATCAGTT
CGACGGCAGCACCACCATTCCACTGGGCGGGAGTGGCTCTTCCGCCGCCG
CTGCCGCTGCTGAGCGGGAAACGGCCGAAGGCCTCAAGCCGCTAGAGAAG
ATTAACAATGCTTCCTACTTCGACCGGCTCAACTCCTGGCTGGGTCAAAT
CTTGCAACGCGACTGTCCCAATTTTGACTTTGAGGTAATTGAACACCCGA
CGCACGGCAGCTGCATTCGCTACTGTCCGCTGGAATTGGGGTTGGGTGAG
CAGCCGCCAAGCTCCGAGAACCTGGAGAGCTTCGCTCAGAGCTTAGAGGC
ACATGTGGACATCCTGCGCGCGACCATCAAGCACAAGGCACGGTTCATTC
ATCTGGTGGAGTGCAGCGACGTGCTGCGCCTCGTTCCACTGCCCGAATGG
GCGGGCATGGGCGGTGTTCGCTTCGTGCCCGAGGGCTGGGAGTCCCTGCT
GACGGACCAGGCCAAAACAGAGCTAAACAAGCTGAACATCGACCTGGTGG
AGGCCCTGAAATCCACGGACAATGCCTTTTCATTAGGCGAAGGCACCGAT
GGTCTGATTTGTGTGCGATTCGGAATGGTGACCCATGAAACGGAGGTCGA
AGAGTTGTTAGACTTGGTGGTCACGGTGGGCAAGAGCGTCCAGGAAAACT
CGCGGGTATTGGACACCATGTCGGAGATTGTTAAAAAGGGCATTGAGGCG
GTTACCGCTGATCTGCAGCGCGAATCGGAGGAGAAGCTCTGGCAGGAGGG
CATCCTGCGCCACGTGCCTGTGGTGGGACGCGTCTTCAACTGGTGGTCCC
CACCGGCCAAGGAGTCGGGCATCAAGGGGCGGAGCCTCAATCTTACCCAA
GGTGTTGTCGAAAGCACCGAGAACATTTACAAGTACCACATGCAGATGAC
CGGAGCCACTGCTCATCAGTTGCCAGCGAATCGTTCGCCTCCCACACCCA
TGGTGCAGACGCCCGTGGTCGCGCCTGCCTTGCCGCCCGTCTTTCCCACG
GTGGAGCCCGTACCCGGAAATGGAAACGGATCCGGAGCGAGCGAGGGCAC
GCCAGTGCAGTCGGGAGAAGCTTCGGGATCGATGCCAGCAGCCTCGGGAG
CGGCTCCGTCTGCGGCGCCGACCCAAAACCATGTGGATCATGCCCGCACC
GTCAGTCAGAGCAGTGCCGCCTCGTCCACCGTTCCGGAGTTAGTGGCCGC
CAGCAGTGCAATTAACAATAACGCAAGCTTTCTAGACCAT
BO10729.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:56:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1486-RB | 2559 | CG1486-PB | 1..2556 | 17..2572 | 12780 | 100 | Plus |
| CG1486-RA | 2559 | CG1486-PA | 1..2556 | 17..2572 | 12780 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:56:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1486-RB | 3700 | CG1486-RB | 394..2950 | 16..2572 | 12785 | 100 | Plus |
| CG1486-RA | 3634 | CG1486-RA | 328..2884 | 16..2572 | 12785 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:55:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 21324710..21325822 | 128..1240 | 5565 | 100 | Plus |
| X | 23542271 | X | 21326228..21326744 | 1523..2039 | 2585 | 100 | Plus |
| X | 23542271 | X | 21327061..21327400 | 2233..2572 | 1700 | 100 | Plus |
| X | 23542271 | X | 21325888..21326170 | 1240..1522 | 1415 | 100 | Plus |
| X | 23542271 | X | 21326801..21326998 | 2037..2234 | 990 | 100 | Plus |
| X | 23542271 | X | 21324460..21324571 | 16..127 | 560 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:56:00 has no hits.
BO10729.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:56:39 Download gff for
BO10729.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1486-RB | 1..2559 | 17..2576 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:07:20 Download gff for
BO10729.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1486-RB | 392..2951 | 16..2576 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:35:59 Download gff for
BO10729.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1486-RA | 329..2884 | 17..2574 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:45:49 Download gff for
BO10729.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1486-RB | 393..2948 | 17..2574 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:30:08 Download gff for
BO10729.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1486-RA | 329..2884 | 17..2574 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:30:08 Download gff for
BO10729.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 21324461..21324571 | 17..127 | 100 | -> | Plus |
| X | 21324710..21325822 | 128..1240 | 100 | -> | Plus |
| X | 21325889..21326170 | 1241..1522 | 100 | -> | Plus |
| X | 21326228..21326743 | 1523..2038 | 100 | -> | Plus |
| X | 21326803..21326996 | 2039..2232 | 100 | -> | Plus |
| X | 21327061..21327400 | 2233..2574 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:35:59 Download gff for
BO10729.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 21195488..21195598 | 17..127 | 100 | -> | Plus |
| arm_X | 21195737..21196849 | 128..1240 | 100 | -> | Plus |
| arm_X | 21196916..21197197 | 1241..1522 | 100 | -> | Plus |
| arm_X | 21197255..21197770 | 1523..2038 | 100 | -> | Plus |
| arm_X | 21197830..21198023 | 2039..2232 | 100 | -> | Plus |
| arm_X | 21198088..21198427 | 2233..2574 | 99 | | Plus |
BO10729.pep Sequence
Translation from 16 to 2590
> BO10729.pep
MSAAGRSVDDPGQSPLVDQEPDPGQSTPAVAEIAASSIRSGLAELELRSS
QVLQRLENVKVSTTPESPNPVENEEEAGERVTSEDLLPAKHRVPSDILKS
LEQLVSYTDSDDDPEFPLPALDDVSHLALISHSIVAYLSHLDRQQLLRVT
NSISGDATRWLGTLFHFAHPASSFHADNADAVLRTVRLAIVARCPGYLEG
GIPALAQPTFYISENTTPMRLHYACRQLGIPLEAIKVIPEHSQSGTMDVT
LLQKQIQQDVGNNRTPLLVVADIGASLCGYVDNLLRLRDVCKAHNMWLHA
SGHGLAALVCAQNQGHVEEVLHSMALNLGSWLGVPSLPIVLLHRPLQNSA
LSAFESDPILSRRLNALSLWTSLQALGRKAIAERLHVAFQTCSILFEIAS
KCEGIRVLSHTPGAQTGASLSDVIQSPFDVQALFDAAAPVVAYQFDGSTT
IPLGGSGSSAAAAAAERETAEGLKPLEKINNASYFDRLNSWLGQILQRDC
PNFDFEVIEHPTHGSCIRYCPLELGLGEQPPSSENLESFAQSLEAHVDIL
RATIKHKARFIHLVECSDVLRLVPLPEWAGMGGVRFVPEGWESLLTDQAK
TELNKLNIDLVEALKSTDNAFSLGEGTDGLICVRFGMVTHETEVEELLDL
VVTVGKSVQENSRVLDTMSEIVKKGIEAVTADLQRESEEKLWQEGILRHV
PVVGRVFNWWSPPAKESGIKGRSLNLTQGVVESTENIYKYHMQMTGATAH
QLPANRSPPTPMVQTPVVAPALPPVFPTVEPVPGNGNGSGASEGTPVQSG
EASGSMPAASGAAPSAAPTQNHVDHARTVSQSSAASSTVPELVAASSAIN
NNASFLDH
BO10729.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:02:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1486-PB | 852 | CG1486-PB | 1..852 | 1..852 | 4370 | 100 | Plus |
| CG1486-PA | 852 | CG1486-PA | 1..852 | 1..852 | 4370 | 100 | Plus |
