Clone Sequence Records
BO10735.3prime Sequence
820 bp (779 high quality bases) assembled on 2006-04-19
> BO10735.3prime
ATGGTCTAGAAAGCTTGCTGTCGCCACATCACTCATACGCAGCGTTGTCC
AGCTGGAGAGATACGCCAGCGCGAGCATGGCCGCGTAGAGCAGCCGGTCG
CATCCGGCAAACTGGCCAGGACCATGTCCACTTCTGGCCGCCGCACTTGT
GCTCTCGGGCCAAACGACCTCGACTTCGGACATTTTGAAAATGCTCAGCA
GTCGGTGGGATTGGAGCTCGCTGTGCTCGCTATTGATTTGATGACTGATG
GTCTTCAGTATCGCGGTGCACTCGTCCTTCTCCTTACGCAGCAGCTCAAT
ATCCTTCAGTTTGCCATCGTGTGGCAGCCGCGCAGCAATGATGATGTTCT
CCTCGGTCATATTGAACAGCGTGAGGGTGCACTGCGTCTGATTATCGATG
TATGTGGTTACGTACTGCTGCAGGGCCCGCACGGCATCCTGCACCCCCAG
GTTGGTGTGGGGCCTCAGCAGCGCCTCATCCGCGGCACTGTATCCGAGCA
GCAGGAATATCCCACCTGGCAGAATGTACTCCCCGAGCGGCGGTTTCATG
CAGATGAAGCGGCCCGAGTAGCACAAACAGCGTCCGCGGAACGCCTGGTA
GGCGGGGGAGGCGTGGCTGTAAAAGGCGAGGGCGGTGCGGCAGGGGGCGA
ATGGCACGCAGAGGGCGTGGCAGGTGAGGATGAGCGACTCGCCGCAGCTG
CACAGCTCACTGCACTCGACGTCGTCCAAGGAGTAGATTCGCTTGCTGCT
GCCTTCCCGAATAAGTTGATCTGACTGACGTGGTCGCTGGACAACGCAGT
TTCTTGGCGGCTGTGTTGTT
BO10735.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:09:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4342-PA | 819 | CG4342-RA | 15..816 | 820..19 | 4010 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:20:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gfrl-RJ | 6630 | CG43224-RJ | 3508..4309 | 820..19 | 4010 | 100 | Minus |
| Gfrl-RI | 6279 | CG43224-RI | 3157..3958 | 820..19 | 4010 | 100 | Minus |
| Gfrl-RH | 7235 | CG43224-RH | 4113..4914 | 820..19 | 4010 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:20:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20381317..20381576 | 19..278 | 1300 | 100 | Plus |
| 3R | 32079331 | 3R | 20383108..20383333 | 513..738 | 1130 | 100 | Plus |
| 3R | 32079331 | 3R | 20382168..20382298 | 388..518 | 655 | 100 | Plus |
| 3R | 32079331 | 3R | 20381961..20382076 | 276..391 | 580 | 100 | Plus |
| 3R | 32079331 | 3R | 20383804..20383868 | 739..803 | 325 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:20:15 has no hits.
BO10735.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:47:41 Download gff for
BO10735.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4342-PA | 15..819 | 16..820 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:04:05 Download gff for
BO10735.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4342-PA | 15..819 | 16..820 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 21:54:19 Download gff for
BO10735.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gfrl-RH | 4113..4921 | 13..820 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:38:46 Download gff for
BO10735.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gfrl-RH | 4113..4921 | 13..820 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:38:46 Download gff for
BO10735.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20383111..20383333 | 516..738 | 100 | <- | Plus |
| 3R | 20383804..20383868 | 739..803 | 100 | <- | Plus |
| 3R | 20385652..20385668 | 804..820 | 100 | | Plus |
| 3R | 20381310..20381574 | 13..276 | 98 | <- | Plus |
| 3R | 20381962..20382072 | 277..387 | 100 | <- | Plus |
| 3R | 20382168..20382295 | 388..515 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 21:54:19 Download gff for
BO10735.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16207032..16207296 | 13..276 | 98 | <- | Plus |
| arm_3R | 16207684..16207794 | 277..387 | 100 | <- | Plus |
| arm_3R | 16207890..16208017 | 388..515 | 100 | <- | Plus |
| arm_3R | 16208833..16209055 | 516..738 | 100 | <- | Plus |
| arm_3R | 16209526..16209590 | 739..803 | 100 | <- | Plus |
| arm_3R | 16211374..16211390 | 804..820 | 100 | | Plus |
BO10735.5prime Sequence
848 bp (822 high quality bases) assembled on 2006-04-19
> BO10735.5prime
GAAGTTATCAGTCGACATGGCCACCACGACAACAACACAGCCGCCAAGAA
ACTGCGTTGTCCAGCGACCACGTCAGTCAGATCAACTTATTCGGGAAGGC
AGCAGCAAGCGAATCTACTCCTTGGACGACGTCGAGTGCAGTGAGCTGTG
CAGCTGCGGCGAGTCGCTCATCCTCACCTGCCACGCCCTCTGCGTGCCAT
TCGCCCCCTGCCGCACCGCCCTCGCCTTTTACAGCCACGCCTCCCCCGCC
TACCAGGCGTTCCGCGGACGCTGTTTGTGCTACTCGGGCCGCTTCATCTG
CATGAAACCGCCGCTCGGGGAGTACATTCTGCCAGGTGGGATATTCCTGC
TGCTCGGATACAGTGCCGCGGATGAGGCGCTGCTGAGGCCCCACACCAAC
CTGGGGGTGCAGGATGCCGTGCGGGCCCTGCAGCAGTACGTAACCACATA
CATCGATAATCAGACGCAGTGCACCCTCACGCTGTTCAATATGACCGAGG
AGAACATCATCATTGCTGCGCGGCTGCCACACGATGGCAAACTGAAGGAT
ATTGAGCTGCTGCGTAAGGAGAAGGACGAGTGCACCGCGATACTGAAGAC
CATCAGTCATCAAATCAATAGCGAGCACAGCGAGCTCCAATCCCACCGAC
TGCTGAGCATTTTCAAAATGTCCGAAGTCGAGGTCGTTTGGCCCGAGAGC
ACAAGTGCGGCGGCCAGAAGTGGACATGGTCCTGGCCAGTTTGCCGGATG
CGACCGGCTGCTCTACGCGGCCATGCTCGCGCTGGCGTATCTCTCCAGCT
GGACAACGCTGCGTATGAGTGATGTGGCGACAGCAAGCTTTCTAGACC
BO10735.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:09:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4342-PA | 819 | CG4342-RA | 1..816 | 17..832 | 4080 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:13:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gfrl-RJ | 6630 | CG43224-RJ | 3494..4309 | 17..832 | 4080 | 100 | Plus |
| Gfrl-RI | 6279 | CG43224-RI | 3143..3958 | 17..832 | 4080 | 100 | Plus |
| Gfrl-RH | 7235 | CG43224-RH | 4099..4914 | 17..832 | 4080 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:13:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20381317..20381576 | 832..573 | 1300 | 100 | Minus |
| 3R | 32079331 | 3R | 20383108..20383333 | 338..113 | 1130 | 100 | Minus |
| 3R | 32079331 | 3R | 20382168..20382298 | 463..333 | 655 | 100 | Minus |
| 3R | 32079331 | 3R | 20381961..20382076 | 575..460 | 580 | 100 | Minus |
| 3R | 32079331 | 3R | 20383804..20383868 | 112..48 | 325 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:13:26 has no hits.
BO10735.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:47:42 Download gff for
BO10735.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4342-PA | 1..819 | 17..835 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:04:06 Download gff for
BO10735.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4342-PA | 1..819 | 17..835 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:49:30 Download gff for
BO10735.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gfrl-RH | 4092..4921 | 9..838 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:46:30 Download gff for
BO10735.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gfrl-RH | 4092..4921 | 9..838 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:46:30 Download gff for
BO10735.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20383804..20383868 | 48..112 | 100 | <- | Minus |
| 3R | 20381310..20381574 | 575..838 | 98 | <- | Minus |
| 3R | 20381962..20382072 | 464..574 | 100 | <- | Minus |
| 3R | 20382168..20382295 | 336..463 | 100 | <- | Minus |
| 3R | 20383111..20383333 | 113..335 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:49:30 Download gff for
BO10735.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16207032..16207296 | 575..838 | 98 | <- | Minus |
| arm_3R | 16207684..16207794 | 464..574 | 100 | <- | Minus |
| arm_3R | 16207890..16208017 | 336..463 | 100 | <- | Minus |
| arm_3R | 16208833..16209055 | 113..335 | 100 | <- | Minus |
| arm_3R | 16209526..16209590 | 48..112 | 100 | <- | Minus |
BO10735.complete Sequence
850 bp (850 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631860
> BO10735.complete
GAAGTTATCAGTCGACATGGCCACCACGACAACAACACAGCCGCCAAGAA
ACTGCGTTGTCCAGCGACCACGTCAGTCAGATCAACTTATTCGGGAAGGC
AGCAGCAAGCGAATCTACTCCTTGGACGACGTCGAGTGCAGTGAGCTGTG
CAGCTGCGGCGAGTCGCTCATCCTCACCTGCCACGCCCTCTGCGTGCCAT
TCGCCCCCTGCCGCACCGCCCTCGCCTTTTACAGCCACGCCTCCCCCGCC
TACCAGGCGTTCCGCGGACGCTGTTTGTGCTACTCGGGCCGCTTCATCTG
CATGAAACCGCCGCTCGGGGAGTACATTCTGCCAGGTGGGATATTCCTGC
TGCTCGGATACAGTGCCGCGGATGAGGCGCTGCTGAGGCCCCACACCAAC
CTGGGGGTGCAGGATGCCGTGCGGGCCCTGCAGCAGTACGTAACCACATA
CATCGATAATCAGACGCAGTGCACCCTCACGCTGTTCAATATGACCGAGG
AGAACATCATCATTGCTGCGCGGCTGCCACACGATGGCAAACTGAAGGAT
ATTGAGCTGCTGCGTAAGGAGAAGGACGAGTGCACCGCGATACTGAAGAC
CATCAGTCATCAAATCAATAGCGAGCACAGCGAGCTCCAATCCCACCGAC
TGCTGAGCATTTTCAAAATGTCCGAAGTCGAGGTCGTTTGGCCCGAGAGC
ACAAGTGCGGCGGCCAGAAGTGGACATGGTCCTGGCCAGTTTGCCGGATG
CGACCGGCTGCTCTACGCGGCCATGCTCGCGCTGGCGTATCTCTCCAGCT
GGACAACGCTGCGTATGAGTGATGTGGCGACAGCAAGCTTTCTAGACCAT
BO10735.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:57:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gfrl-RJ | 3639 | CG43224-PJ | 2821..3636 | 17..832 | 4080 | 100 | Plus |
| Gfrl-RI | 3507 | CG43224-PI | 2689..3504 | 17..832 | 4080 | 100 | Plus |
| Gfrl-RH | 3306 | CG43224-PH | 2488..3303 | 17..832 | 4080 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:57:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gfrl-RJ | 6630 | CG43224-RJ | 3494..4309 | 17..832 | 4080 | 100 | Plus |
| Gfrl-RI | 6279 | CG43224-RI | 3143..3958 | 17..832 | 4080 | 100 | Plus |
| Gfrl-RH | 7235 | CG43224-RH | 4099..4914 | 17..832 | 4080 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:57:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20381317..20381576 | 832..573 | 1300 | 100 | Minus |
| 3R | 32079331 | 3R | 20383108..20383333 | 338..113 | 1130 | 100 | Minus |
| 3R | 32079331 | 3R | 20382168..20382298 | 463..333 | 655 | 100 | Minus |
| 3R | 32079331 | 3R | 20381961..20382076 | 575..460 | 580 | 100 | Minus |
| 3R | 32079331 | 3R | 20383804..20383868 | 112..48 | 325 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:57:36 has no hits.
BO10735.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:56:16 Download gff for
BO10735.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4342-RA | 1..819 | 17..835 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:28:44 Download gff for
BO10735.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mun-RB | 1524..2353 | 9..838 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:54:35 Download gff for
BO10735.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gfrl-RH | 4099..4914 | 17..834 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:56:16 Download gff for
BO10735.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4342-RA | 108..937 | 9..838 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:08:08 Download gff for
BO10735.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gfrl-RH | 4099..4914 | 17..834 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:08:08 Download gff for
BO10735.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20383804..20383868 | 48..112 | 100 | <- | Minus |
| 3R | 20385652..20385682 | 17..47 | 100 | | Minus |
| 3R | 20381313..20381574 | 575..834 | 99 | <- | Minus |
| 3R | 20381962..20382072 | 464..574 | 100 | <- | Minus |
| 3R | 20382168..20382295 | 336..463 | 100 | <- | Minus |
| 3R | 20383111..20383333 | 113..335 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:54:35 Download gff for
BO10735.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16207035..16207296 | 575..834 | 99 | <- | Minus |
| arm_3R | 16207684..16207794 | 464..574 | 100 | <- | Minus |
| arm_3R | 16207890..16208017 | 336..463 | 100 | <- | Minus |
| arm_3R | 16208833..16209055 | 113..335 | 100 | <- | Minus |
| arm_3R | 16209526..16209590 | 48..112 | 100 | <- | Minus |
| arm_3R | 16211374..16211404 | 17..47 | 100 | | Minus |
BO10735.pep Sequence
Translation from 16 to 850
> BO10735.pep
MATTTTTQPPRNCVVQRPRQSDQLIREGSSKRIYSLDDVECSELCSCGES
LILTCHALCVPFAPCRTALAFYSHASPAYQAFRGRCLCYSGRFICMKPPL
GEYILPGGIFLLLGYSAADEALLRPHTNLGVQDAVRALQQYVTTYIDNQT
QCTLTLFNMTEENIIIAARLPHDGKLKDIELLRKEKDECTAILKTISHQI
NSEHSELQSHRLLSIFKMSEVEVVWPESTSAAARSGHGPGQFAGCDRLLY
AAMLALAYLSSWTTLRMSDVATASFLDH
BO10735.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:21:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gfrl-PF | 864 | CG43224-PF | 593..864 | 1..272 | 1426 | 100 | Plus |
| Gfrl-PM | 1042 | CG43224-PM | 771..1042 | 1..272 | 1426 | 100 | Plus |
| Gfrl-PH | 1101 | CG43224-PH | 830..1101 | 1..272 | 1426 | 100 | Plus |
| Gfrl-PI | 1168 | CG43224-PI | 897..1168 | 1..272 | 1426 | 100 | Plus |
| Gfrl-PJ | 1212 | CG43224-PJ | 941..1212 | 1..272 | 1426 | 100 | Plus |
