Clone BO10739 Report

Search the DGRC for BO10739

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:107
Well:39
Vector:pDNR-Dual
Associated Gene/Transcriptl(2)k16918-RB
Protein status:BO10739.pep: validated full length
Sequenced Size:1237

Clone Sequence Records

BO10739.3prime Sequence

840 bp (771 high quality bases) assembled on 2006-04-19

> BO10739.3prime
ATGGTCTAGAAAGCTTGCGAGACTAACCTGCTGCATCTTATCAAAATCTA
AACACGGCCGATGCGGTCGCTGCAGTCTCTGGGTGGCGACGGCGGTGACG
TTAGCGGCATTTCCGGCGGAATTGGCAGCATTGTGTGTCGTTGTTGTGCC
TGATGATGATGATGCTGACGATGGTGATATTGTTGTGGCGCCCCCGGCTG
CACCACTGGCATTGTTACTGGGTCGCCGCCTGGGCGATATGGCGCAGTGG
AACAGTTTCGCCGGCGGACTGACCGAACGCACCTCCATATCCAGGCCAGT
GGTGCTGGCCGGACTGCTCCGCGAGCTGTTGTAGTGGAAACTATATTTCG
GCTGCGGCTGGTAAATGTGGTGGCTGCTGTTGCTCATCTTTAGCGAGCTG
CTGCACGCCTTGATCACACTCGGCTCATTCTCGTTGCCGCCGTTTCCGTT
TCCGGTTGCGGCCACAGTTCCGCTGGCATTCCCTGCCAGTGCGCCAATCT
TGGCGCACTTACTGCTATTGGCCGCGCCACCGCCACCGCCGTTGTCACCA
TTCTCCTCGTTTACACTATTATCACATAATTTAATATTTTCGATGCCACA
TCGGGCCTCCGATAATATCAGTGGCGTTGTGGAGCGGAACATCATATGGC
TACGATTTGGCTTGAATGCCTCCAATGGCGGCGATGTGCGAAAATTCACG
GGCGTCAATATCGGCTCCAGCGAGTTGCGCAACTCATCGTCGGAGCTGTG
GGCCAGCGATCGCTTGCGGTTCTCCACCATCAGCGTGGAGCTAGAACGCT
TCGAGTTGGAGGTGGTGGCCCGCTCCTCGTAGGGCGCCTC

BO10739.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:09:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG3920-PA 1056 l(2)k16918-RA 232..1053 840..19 4110 100 Minus
CG3920-PB 1206 l(2)k16918-RB 382..1203 840..19 4110 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 10:30:02
Subject Length Description Subject Range Query Range Score Percent Strand
Reph-RB 2928 CG3920-RB 1450..2271 840..19 4110 100 Minus
Reph-RA 3750 CG3920-RA 496..1317 840..19 4110 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 10:29:56
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3807523..3808238 734..19 3580 100 Minus
2L 23513712 2L 3807354..3807461 840..733 540 100 Minus
Blast to na_te.dros performed 2015-02-01 10:29:59
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 1056..1158 237..136 152 62.1 Minus

BO10739.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:47:48 Download gff for BO10739.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3920-PA 232..1056 15..840 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:04:15 Download gff for BO10739.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3920-PB 382..1206 15..840 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 16:28:18 Download gff for BO10739.3prime
Subject Subject Range Query Range Percent Splice Strand
Reph-RA 496..1320 15..840 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 12:04:45 Download gff for BO10739.3prime
Subject Subject Range Query Range Percent Splice Strand
Reph-RA 496..1320 15..840 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 12:04:45 Download gff for BO10739.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 3807354..3807461 733..840 100 -> Minus
2L 3807525..3808241 15..732 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 16:28:18 Download gff for BO10739.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3807354..3807461 733..840 100 -> Minus
arm_2L 3807525..3808241 15..732 99   Minus

BO10739.5prime Sequence

777 bp (776 high quality bases) assembled on 2006-04-19

> BO10739.5prime
GAAGTTATCAGTCGACATGATAAAGTTTGTCAGACAGAAAAATCGCGAAA
ATACACTGAGGGAATCGAAAAATTTTATGCGTAAAAAGCGTGAATCGAAT
GACTCTGGCACCGAATCTGATGGTGAACTCCTCGATGTGGAAAACCAACG
TCACTTAGACGTGGATATGGAAACTAGTGTTGCTGGCCAAAAACCAATAG
CTTCTGCAATGATGTGTCACCAGCAGACGTCGTCATCCTGCGCCCATCTC
ATGTACGACCAGCACAGTTCCGAGGAGGAGTTGGAGGTGATCAACGGGCC
GTCCTCGCAGGCGGGTCAGCATCCCGGAACGGCGGCCACGGGCTCATCGT
GTGCCTCCCGGATCTCGAATCGCGGATGCACCTCCTCGCTGGACACGGAG
GCGCCCTACGAGGAGCGGGCCACCACCTCCAACTCGAAGCGTTCTAGCTC
CACGCTGATGGTGGAGAACCGCAAGCGATCGCTGGCCCACAGCTCCGACG
ATGAGTTGCGCAACTCGCTGGAGCCGATATTGACGCCCGTGAATTTTCGC
ACATCGCCGCCATTGGAGGCATTCAAGCCAAATCGTAGCCATATGATGTT
CCGCTCCACAACGCCACTGATATTATCGGAGGCCCGATGTGGCATCGAAA
ATATTAAATTATGTGATAATAGTGTAAACGAGGAGAATGGTGACAACGGC
GGTGGCGGTGGCGCGGCCAATAGCAGTAAGTGCGCCAAGATTGGCGCACT
GGCAGGGAATGCCAGCGGAACTGTGGC

BO10739.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:09:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG3920-PB 1206 l(2)k16918-RB 1..761 17..777 3805 100 Plus
CG3920-PA 1056 l(2)k16918-RA 1..611 167..777 3055 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:39:35
Subject Length Description Subject Range Query Range Score Percent Strand
Reph-RB 2928 CG3920-RB 1068..1829 16..777 3810 100 Plus
Reph-RA 3750 CG3920-RA 187..875 89..777 3445 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:39:31
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3807133..3807461 177..505 1645 100 Plus
2L 23513712 2L 3807523..3807796 504..777 1370 100 Plus
2L 23513712 2L 3806967..3807058 87..178 460 100 Plus
2L 23513712 2L 3806749..3806821 16..88 365 100 Plus
Blast to na_te.dros performed on 2015-02-12 06:39:33 has no hits.

BO10739.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:47:49 Download gff for BO10739.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3920-PB 1..761 17..777 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:04:17 Download gff for BO10739.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3920-PB 1..761 17..777 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 13:40:15 Download gff for BO10739.5prime
Subject Subject Range Query Range Percent Splice Strand
Reph-RB 1068..1829 16..777 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:05:15 Download gff for BO10739.5prime
Subject Subject Range Query Range Percent Splice Strand
Reph-RB 1068..1829 16..777 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:05:15 Download gff for BO10739.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 3807525..3807796 506..777 100   Plus
2L 3806749..3806821 16..88 100 -> Plus
2L 3806969..3807056 89..176 100 -> Plus
2L 3807133..3807461 177..505 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 13:40:15 Download gff for BO10739.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3806749..3806821 16..88 100 -> Plus
arm_2L 3806969..3807056 89..176 100 -> Plus
arm_2L 3807133..3807461 177..505 100 -> Plus
arm_2L 3807525..3807796 506..777 100   Plus

BO10739.complete Sequence

1237 bp (1237 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ638678

> BO10739.complete
GAAGTTATCAGTCGACATGATAAAGTTTGTCAGACAGAAAAATCGCGAAA
ATACACTGAGGGAATCGAAAAATTTTATGCGTAAAAAGCGTGAATCGAAT
GACTCTGGCACCGAATCTGATGGTGAACTCCTCGATGTGGAAAACCAACG
TCACTTAGACGTGGATATGGAAACTAGTGTTGCTGGCCAAAAACCAATAG
CTTCTGCAATGATGTGTCACCAGCAGACGTCGTCATCCTGCGCCCATCTC
ATGTACGACCAGCACAGTTCCGAGGAGGAGTTGGAGGTGATCAACGGGCC
GTCCTCGCAGGCGGGTCAGCATCCCGGAACGGCGGCCACGGGCTCATCGT
GTGCCTCCCGGATCTCGAATCGCGGATGCACCTCCTCGCTGGACACGGAG
GCGCCCTACGAGGAGCGGGCCACCACCTCCAACTCGAAGCGTTCTAGCTC
CACGCTGATGGTGGAGAACCGCAAGCGATCGCTGGCCCACAGCTCCGACG
ATGAGTTGCGCAACTCGCTGGAGCCGATATTGACGCCCGTGAATTTTCGC
ACATCGCCGCCATTGGAGGCATTCAAGCCAAATCGTAGCCATATGATGTT
CCGCTCCACAACGCCACTGATATTATCGGAGGCCCGATGTGGCATCGAAA
ATATTAAATTATGTGATAATAGTGTAAACGAGGAGAATGGTGACAACGGC
GGTGGCGGTGGCGCGGCCAATAGCAGTAAGTGCGCCAAGATTGGCGCACT
GGCAGGGAATGCCAGCGGAACTGTGGCCGCAACCGGAAACGGAAACGGCG
GCAACGAGAATGAGCCGAGTGTGATCAAGGCGTGCAGCAGCTCGCTAAAG
ATGAGCAACAGCAGCCACCACATTTACCAGCCGCAGCCGAAATATAGTTT
CCACTACAACAGCTCGCGGAGCAGTCCGGCCAGCACCACTGGCCTGGATA
TGGAGGTGCGTTCGGTCAGTCCGCCGGCGAAACTGTTCCACTGCGCCATA
TCGCCCAGGCGGCGACCCAGTAACAATGCCAGTGGTGCAGCCGGGGGCGC
CACAACAATATCACCATCGTCAGCATCATCATCATCAGGCACAACAACGA
CACACAATGCTGCCAATTCCGCCGGAAATGCCGCTAACGTCACCGCCGTC
GCCACCCAGAGACTGCAGCGACCGCATCGGCCGTGTTTAGATTTTGATAA
GATGCAGCAGGTTAGTCTCGCAAGCTTTCTAGACCAT

BO10739.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:26:03
Subject Length Description Subject Range Query Range Score Percent Strand
Reph-RB 1206 CG3920-PB 1..1203 17..1219 6015 100 Plus
Reph-RA 1056 CG3920-PA 1..1053 167..1219 5265 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:04
Subject Length Description Subject Range Query Range Score Percent Strand
Reph-RB 2928 CG3920-RB 1068..2271 16..1219 6020 100 Plus
Reph-RA 3750 CG3920-RA 187..1317 89..1219 5655 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:01
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3807523..3808238 504..1219 3580 100 Plus
2L 23513712 2L 3807133..3807461 177..505 1645 100 Plus
2L 23513712 2L 3806967..3807058 87..178 460 100 Plus
2L 23513712 2L 3806749..3806821 16..88 365 100 Plus
Blast to na_te.dros performed 2014-11-28 01:26:02
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 1056..1158 1001..1102 152 62.1 Plus

BO10739.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:48:57 Download gff for BO10739.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)k16918-RB 1..1206 17..1223 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:20:20 Download gff for BO10739.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)k16918-RB 1051..2257 16..1223 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:47:24 Download gff for BO10739.complete
Subject Subject Range Query Range Percent Splice Strand
Reph-RB 1069..2271 17..1221 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:48:57 Download gff for BO10739.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)k16918-RB 1051..2257 16..1223 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:48:26 Download gff for BO10739.complete
Subject Subject Range Query Range Percent Splice Strand
Reph-RB 1069..2271 17..1221 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:48:26 Download gff for BO10739.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3806750..3806821 17..88 100 -> Plus
2L 3806969..3807056 89..176 100 -> Plus
2L 3807133..3807461 177..505 100 -> Plus
2L 3807525..3808238 506..1221 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:47:24 Download gff for BO10739.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3806750..3806821 17..88 100 -> Plus
arm_2L 3806969..3807056 89..176 100 -> Plus
arm_2L 3807133..3807461 177..505 100 -> Plus
arm_2L 3807525..3808238 506..1221 99   Plus

BO10739.pep Sequence

Translation from 16 to 1237

> BO10739.pep
MIKFVRQKNRENTLRESKNFMRKKRESNDSGTESDGELLDVENQRHLDVD
METSVAGQKPIASAMMCHQQTSSSCAHLMYDQHSSEEELEVINGPSSQAG
QHPGTAATGSSCASRISNRGCTSSLDTEAPYEERATTSNSKRSSSTLMVE
NRKRSLAHSSDDELRNSLEPILTPVNFRTSPPLEAFKPNRSHMMFRSTTP
LILSEARCGIENIKLCDNSVNEENGDNGGGGGAANSSKCAKIGALAGNAS
GTVAATGNGNGGNENEPSVIKACSSSLKMSNSSHHIYQPQPKYSFHYNSS
RSSPASTTGLDMEVRSVSPPAKLFHCAISPRRRPSNNASGAAGGATTISP
SSASSSSGTTTTHNAANSAGNAANVTAVATQRLQRPHRPCLDFDKMQQVS
LASFLDH

BO10739.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:31:14
Subject Length Description Subject Range Query Range Score Percent Strand
Reph-PB 401 CG3920-PB 1..401 1..401 2066 100 Plus
Reph-PA 351 CG3920-PA 1..351 51..401 1811 100 Plus