Clone BO10744 Report

Search the DGRC for BO10744

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:107
Well:44
Vector:pDNR-Dual
Associated Gene/Transcriptrdo-RA
Protein status:BO10744.pep: Imported from assembly
Sequenced Size:2257

Clone Sequence Records

BO10744.complete Sequence

2257 bp assembled on 2010-04-13

GenBank Submission: KX794176

> BO10744.complete
GAAGTTATCAGTCGACATGCTCTTCAAGTGGCTCCTGTTCAGCCTGTGCA
TAATGCCGGCCATGTTCAGCAATACGAAGAGGAAATGCCCCACTGAATGC
CAATGCAGCATGGACGACTTGGATCGTTATCAGGCCATCTGCACAAAAGG
AGGCCTGAATTCACTGCTGTCGCCCAATGAGTTGGACGTCGATGTTAAAG
TTATTATCATCCGTGGACCCAGGAATTCCATTACAATCGGTCCAGCGCTG
CGGCAGTTCATGAAACTGGAGATACTCCGCATCACCGACTCCAATCTGCC
GGCAATAGGCGCGGAGTCGTTTTGGGGCCTCAAATATCTGCGGATATTAG
ATCTGTCCAAGAACAATATAACCAATATCACAGAGAACAACTTTCGAGGA
CAGGACAACCTACTGGAATTGGACTTATCGAAAAATAAAGTTTTACGCAT
GGCCAGTTCAACGTTTCGCCATTTGACGGATCTGCGTCGCCTTAATTTGG
CCGACAACTCGATTGTGGAGCTCGTGCAGCGCAACTTCTTCATGCTAAGT
AGACTCAAGTATCTGGACCTTAGCGGAAATCCGCTGCAGGATTTACAGCC
GGATGTGTTTCGCGATGTGCCGGAACTCAAAGTGCTCAAGTGTCGCAATT
GCCAGCTGAAAAAAATCAATCCGCAGATGTACAATTTATTGCCGCTTTTA
AGCGAATTGGATTTGGGACGCAACGAGTTCAAGTTTCTCGACAAGGATGA
ATTCCGCGATGTGAAGAGACTGACCAAAGTTCTGTTGGATGGCAATCAAT
TGTCTGTGGTGGTGGACCAACTCTTTCGCATGCAGAAGAGTCTTAATCAT
CTGGATTTGTCGTACAATCGGTTGGCCAAAGTGCCCAATGACTCGTTTCT
ACAGCTGACCAACTTGACCTTCCTGGACTTGTCCTACAACAAACTGGTTC
GTCTGGAGCCGCAGTCCATTAGAAGTTTGAGCAATCTGCTGACGCTCAAC
ATAAGTGGCAACGTACTAATGGATCTTAGGGAGATGAGAGAAACCTTTGA
GCTCATTCCCCAGCTTACACACCTGGCGATTGCGGATATGGGCACAATGC
CCGTTGGTCTACTGCATCCCTTCAAGCAACTGAGATATCTCAATATCTCC
GGCAATTCCTTGAACAACACGGCATTGGAGGTCATCGATCCGTGTCGAGA
ACTGGAGTTTTTGGACTTATCTCGGAATCAATTACACGGCATCAGCGAGG
ACACGGTCCTCAGGATTCAAGGCATACGCAACGTGCGACTCGACAACAAT
CCTTTGATATGCGACGAGTGTCACATGGGGAAATTGATAAATGTCGTGCG
CCAACTGCAGTGGAAATGGGATACCTATCCCATTTGCTTTCTGCCGAAGA
GTCTTCGAGGTGCAGAAATAAATAATTTGGATATCAACGGGCTGCACACG
TGCTTGACTTTCATCACCGACGAGGAGCAAAATGCAGCCAGCACATCATA
TAACTTTCTTGAGCACGGTGGTCTCAATACTCTGGCCATTCTGGGTGGCA
TCATCTTTGTGCTAATTGCCGTCATTATACTGTCCTTGGTTGCCTGCTTT
TCGAAAAATCGGGCTCGCTACTACACGAGGGAGGACCATCTGAATGGCAG
CGAGAGCAAGTGCCTGGAAAAAAATCTGGAGGCGACCACGATTACAACGC
TGGGCAATGGCAGCTCGCCCACCACGACGACCACGCTGACCCTGGCCACC
TCCCCGGCGGCACCAAATGGTCCAAAGACGAATGGACAGGGCCTGAGCCT
GAGTCCTGCCAATGGCAGCACGCCCGTTCACGGAATCTCCGACGACAAGG
GCAAAGAAATCAACTTCACCTTTCCCGTGGATGATCGCGTCTGCACCATT
GACGAACTGATGCCATCACCACCGCCGCCTCCGCAGCAGCATCCGCATCC
GAATATGGGCAGCCTGATGTACAGTGTGTCGCACTCGCCGAACTCAGCTA
CAACTCTGGCAGCTGTGGCAGCGGCGGCGACTGTTATTCCGCCAGGAGCC
CCCTCTCACTCGTCCATGCCCACGCCCACACCCACTCCTGCCGAGGCTGT
GGTTGTGGTCCTGCCCCCGCCACCGCTACCACCACAACAGCACCACCACC
AGATGGACGGCAGCTTGGCCAGCCTGCGGGAGGTGCAGCAGCAGCTGGTC
CATCTGAGCAGCACGCTAGAGCCGCTGGTCAGCGTTAACGCAAGCTTTCT
AGACCAT

BO10744.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:50:54
Subject Length Description Subject Range Query Range Score Percent Strand
rdo-RA 2226 CG15151-PA 1..2223 17..2239 11115 100 Plus
rdo-RB 2274 CG15151-PB 1082..2271 1050..2239 5950 100 Plus
rdo-RB 2274 CG15151-PB 1..1036 17..1052 5180 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:50:56
Subject Length Description Subject Range Query Range Score Percent Strand
rdo-RA 3800 CG15151-RA 722..2944 17..2239 11115 100 Plus
rdo-RB 3848 CG15151-RB 1803..2992 1050..2239 5950 100 Plus
rdo-RB 3848 CG15151-RB 722..1757 17..1052 5180 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:50:51
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18068801..18069390 1650..2239 2950 100 Plus
2L 23513712 2L 18062360..18062562 148..350 1015 100 Plus
2L 23513712 2L 18065259..18065456 854..1051 990 100 Plus
2L 23513712 2L 18067067..18067231 1355..1519 825 100 Plus
2L 23513712 2L 18065573..18065730 1050..1207 790 100 Plus
2L 23513712 2L 18066774..18066922 1206..1354 745 100 Plus
2L 23513712 2L 18064633..18064778 478..623 730 100 Plus
2L 23513712 2L 18051461..18051594 17..150 670 100 Plus
2L 23513712 2L 18067640..18067773 1517..1650 670 100 Plus
2L 23513712 2L 18063803..18063933 349..479 655 100 Plus
2L 23513712 2L 18065026..18065154 726..854 645 100 Plus
2L 23513712 2L 18064851..18064956 622..727 530 100 Plus
Blast to na_te.dros performed on 2014-11-27 08:50:53 has no hits.

BO10744.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:26:10 Download gff for BO10744.complete
Subject Subject Range Query Range Percent Splice Strand
rdo-RA 695..2917 17..2241 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:02:23 Download gff for BO10744.complete
Subject Subject Range Query Range Percent Splice Strand
rdo-RA 722..2944 17..2241 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:27:30 Download gff for BO10744.complete
Subject Subject Range Query Range Percent Splice Strand
rdo-RA 722..2944 17..2241 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:27:30 Download gff for BO10744.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18065260..18065456 855..1051 100 -> Plus
2L 18065575..18065730 1052..1207 100 -> Plus
2L 18066776..18066922 1208..1354 100 -> Plus
2L 18067067..18067229 1355..1517 100 -> Plus
2L 18067641..18067772 1518..1649 100 -> Plus
2L 18065028..18065154 728..854 100 -> Plus
2L 18051461..18051593 17..149 100 -> Plus
2L 18062362..18062562 150..350 100 -> Plus
2L 18063805..18063932 351..478 100 -> Plus
2L 18064634..18064777 479..622 100 -> Plus
2L 18064852..18064956 623..727 100 -> Plus
2L 18068801..18069390 1650..2241 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:02:23 Download gff for BO10744.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18051461..18051593 17..149 100 -> Plus
arm_2L 18064634..18064777 479..622 100 -> Plus
arm_2L 18064852..18064956 623..727 100 -> Plus
arm_2L 18065028..18065154 728..854 100 -> Plus
arm_2L 18062362..18062562 150..350 100 -> Plus
arm_2L 18063805..18063932 351..478 100 -> Plus
arm_2L 18065260..18065456 855..1051 100 -> Plus
arm_2L 18065575..18065730 1052..1207 100 -> Plus
arm_2L 18066776..18066922 1208..1354 100 -> Plus
arm_2L 18067067..18067229 1355..1517 100 -> Plus
arm_2L 18067641..18067772 1518..1649 100 -> Plus
arm_2L 18068801..18069390 1650..2241 99   Plus

BO10744.3prime Sequence

883 bp (746 high quality bases) assembled on 2006-04-19

> BO10744.3prime
ATGGTCTAGAAAGCTTGCGTTAACGCTGACCAGCGGCTCTAGCGTGCTGC
TCAGATGGACCAGCTGCTGCTGCACCTCCCGCAGGCTGGCCAAGCTGCCG
TCCATCTGGTGGTGGTGCTGTTGTGGTGGTAGCGGTGGCGGGGGCAGGAC
CACAACCACAGCCTCGGCAGGAGTGGGTGTGGGCGTGGGCATGGACGAGT
GAGAGGGGGCTCCTGGCGGAATAACAGTCGCCGCCGCTGCCACAGCTGCC
AGAGTTGTAGCTGAGTTCGGCGAGTGCGACACACTGTACATCAGGCTGCC
CATATTCGGATGCGGATGCTGCTGCGGAGGCGGCGGTGGTGATGGCATCA
GTTCGTCAATGGTGCAGACGCGATCATCCACGGGAAAGGTGAAGTTGATT
TCTTTGCCCTTGTCGTCGGAGATTCCGTGAACGGGCGTGCTGCCATTGGC
AGGACTCAGGCTCAGGCCCTGTCCATTCGTCTTTGGACCATTTGGTGCCG
CCGGGGAGGTGGCCAGGGTCAGCGTGGTCGTCGTGGTGGGCGAGCTGCCA
TTGCCCAGCGTTGTAATCGTGGTCGCCTCCAGATTTTTTTCCAGGCACTT
GCTCTCGCTGCCATTCAGATGGTCCTCCCTCGTGTAGTAGCGAGCCCGAT
TTTTCGAAAAGCAGGCAACCAAGGACAGTATAATGACGGCAATTAGCACA
AAGATGATGCCACCCAGAATGGCCAGAGTATTGAGACCACCGTGCTCAAG
AAAGTTATATGATGTGCTGGCTGCATTTTGCTCCTCGTCGGTGATGAAAG
TCAAGCACGTGTGCAGCCCGTTGATATCCCAATTATTTATTTCTGCACCT
CGAAGACTCTTCGGCAGAAAGCAAATGGGATAG

BO10744.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:09:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG15151-PA 2226 PFE-RA 1359..2223 883..19 4300 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:48:23
Subject Length Description Subject Range Query Range Score Percent Strand
rdo-RB 3848 CG15151-RB 2128..2992 883..19 4310 99.9 Minus
rdo-RA 3800 CG15151-RA 2080..2944 883..19 4310 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:48:15
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18068801..18069390 608..19 2950 100 Minus
2L 23513712 2L 18067087..18067231 883..739 710 99.3 Minus
2L 23513712 2L 18067640..18067773 741..608 670 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:48:19 has no hits.

BO10744.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:47:56 Download gff for BO10744.3prime
Subject Subject Range Query Range Percent Splice Strand
PFE-PA 1359..2226 16..883 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:04:27 Download gff for BO10744.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15151-PA 1359..2226 16..883 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:52:55 Download gff for BO10744.3prime
Subject Subject Range Query Range Percent Splice Strand
rdo-RA 2080..2944 19..883 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:55:58 Download gff for BO10744.3prime
Subject Subject Range Query Range Percent Splice Strand
rdo-RA 2080..2944 19..883 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:55:58 Download gff for BO10744.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 18067087..18067229 741..883 99 -> Minus
2L 18067641..18067772 609..740 100 -> Minus
2L 18068801..18069384 25..608 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:52:55 Download gff for BO10744.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18067087..18067229 741..883 99 -> Minus
arm_2L 18067641..18067772 609..740 100 -> Minus
arm_2L 18068801..18069384 25..608 100 -> Minus

BO10744.5prime Sequence

915 bp (831 high quality bases) assembled on 2006-04-19

> BO10744.5prime
GAAGTTATCAGTCGACATGCTCTTCAAGTGGCTCCTGTTCAGCCTGTGCA
TAATGCCGGCCATGTTCAGCAATACGAAGAGGAAATGCCCCACTGAATGC
CAATGCAGCATGGACGACTTGGATCGTTATCAGGCCATCTGCACAAAAGG
AGGCCTGAATTCACTGCTGTCGCCCAATGAGTTGGACGTCGATGTTAAAG
TTATTATCATCCGTGGACCCAGGAATTCCATTACAATCGGTCCAGCGCTG
CGGCAGTTCATGAAACTGGAGATACTCCGCATCACCGACTCCAATCTGCC
GGCAATAGGCGCGGAGTCGTTTTGGGGCCTCAAATATCTGCGGATATTAG
ATCTGTCCAAGAACAATATAACCAATATCACAGAGAACAACTTTCGAGGA
CAGGACAACCTACTGGAATTGGACTTATCGAAAAATAAAGTTTTACGCAT
GGCCAGTTCAACGTTTCGCCATTTGACGGATCTGCGTCGCCTTAATTTGG
CCGACAACTCGATTGTGGAGCTCGTGCAGCGCAACTTCTTCATGCTAAGT
AGACTCAAGTATCTGGACCTTAGCGGAAATCCGCTGCAGGATTTACAGCC
GGATGTGTTTCGCGATGTGCCGGAACTCAAAGTGCTCAAGTGTCGCAATT
GCCAGCTGAAAAAAATCAATCCGCAGATGTACAATTTATTGCCGCTTTTA
AGCGAATTGGATTTGGGACGCAACGAGTTCAAGTTTCTCGACAAGGATGA
ATTCCGCGATGTGAAGAGACTGACCAAAGTTCTGTTGGATGGCAATCAAT
TGTCTGTGGTGGTGGACCAACTCTTTCGCATGCAGAAGAGTCTTAATCAT
CTGGATTTGTCGTACAATCGGTTGGCCAAAGTGCCCAATGACTCGTTTCT
ACAGCTGACCCACTT

BO10744.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:09:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG15151-PA 2226 PFE-RA 1..894 17..910 4470 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:26:28
Subject Length Description Subject Range Query Range Score Percent Strand
rdo-RB 3848 CG15151-RB 722..1620 17..915 4480 99.9 Plus
rdo-RA 3800 CG15151-RA 722..1620 17..915 4480 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:26:23
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18062360..18062562 148..350 1015 100 Plus
2L 23513712 2L 18064633..18064778 478..623 730 100 Plus
2L 23513712 2L 18051461..18051594 17..150 670 100 Plus
2L 23513712 2L 18063803..18063933 349..479 655 100 Plus
2L 23513712 2L 18065026..18065154 726..854 645 100 Plus
2L 23513712 2L 18064851..18064956 622..727 530 100 Plus
2L 23513712 2L 18065259..18065320 854..915 295 98.4 Plus
Blast to na_te.dros performed 2015-02-12 11:26:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dm88 4558 Dm88 DM88 4558bp 4137..4178 330..371 111 73.8 Plus

BO10744.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:47:57 Download gff for BO10744.5prime
Subject Subject Range Query Range Percent Splice Strand
PFE-PA 1..899 17..915 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:04:29 Download gff for BO10744.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15151-PA 1..899 17..915 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:15:06 Download gff for BO10744.5prime
Subject Subject Range Query Range Percent Splice Strand
rdo-RA 715..1620 10..915 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:38:09 Download gff for BO10744.5prime
Subject Subject Range Query Range Percent Splice Strand
rdo-RA 715..1620 10..915 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:38:09 Download gff for BO10744.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 18051461..18051593 17..149 100 -> Plus
2L 18062362..18062562 150..350 100 -> Plus
2L 18063805..18063932 351..478 100 -> Plus
2L 18064634..18064777 479..622 100 -> Plus
2L 18064852..18064956 623..727 100 -> Plus
2L 18065028..18065154 728..854 100 -> Plus
2L 18065260..18065320 855..915 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:15:06 Download gff for BO10744.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18051461..18051593 17..149 100 -> Plus
arm_2L 18062362..18062562 150..350 100 -> Plus
arm_2L 18063805..18063932 351..478 100 -> Plus
arm_2L 18064634..18064777 479..622 100 -> Plus
arm_2L 18064852..18064956 623..727 100 -> Plus
arm_2L 18065028..18065154 728..854 100 -> Plus
arm_2L 18065260..18065320 855..915 98   Plus

BO10744.pep Sequence

Translation from 16 to 2257

> BO10744.pep
MLFKWLLFSLCIMPAMFSNTKRKCPTECQCSMDDLDRYQAICTKGGLNSL
LSPNELDVDVKVIIIRGPRNSITIGPALRQFMKLEILRITDSNLPAIGAE
SFWGLKYLRILDLSKNNITNITENNFRGQDNLLELDLSKNKVLRMASSTF
RHLTDLRRLNLADNSIVELVQRNFFMLSRLKYLDLSGNPLQDLQPDVFRD
VPELKVLKCRNCQLKKINPQMYNLLPLLSELDLGRNEFKFLDKDEFRDVK
RLTKVLLDGNQLSVVVDQLFRMQKSLNHLDLSYNRLAKVPNDSFLQLTNL
TFLDLSYNKLVRLEPQSIRSLSNLLTLNISGNVLMDLREMRETFELIPQL
THLAIADMGTMPVGLLHPFKQLRYLNISGNSLNNTALEVIDPCRELEFLD
LSRNQLHGISEDTVLRIQGIRNVRLDNNPLICDECHMGKLINVVRQLQWK
WDTYPICFLPKSLRGAEINNLDINGLHTCLTFITDEEQNAASTSYNFLEH
GGLNTLAILGGIIFVLIAVIILSLVACFSKNRARYYTREDHLNGSESKCL
EKNLEATTITTLGNGSSPTTTTTLTLATSPAAPNGPKTNGQGLSLSPANG
STPVHGISDDKGKEINFTFPVDDRVCTIDELMPSPPPPPQQHPHPNMGSL
MYSVSHSPNSATTLAAVAAAATVIPPGAPSHSSMPTPTPTPAEAVVVVLP
PPPLPPQQHHHQMDGSLASLREVQQQLVHLSSTLEPLVSVNASFLDH

BO10744.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:15:48
Subject Length Description Subject Range Query Range Score Percent Strand
rdo-PA 741 CG15151-PA 1..741 1..741 3838 100 Plus
rdo-PB 757 CG15151-PB 1..757 1..741 3811 97.9 Plus
CG7509-PA 615 CG7509-PA 186..552 111..476 344 27.6 Plus
conv-PA 1092 CG8561-PA 176..545 84..430 339 26.9 Plus
conv-PB 1092 CG8561-PB 176..545 84..430 339 26.9 Plus
CG7509-PA 615 CG7509-PA 231..484 84..337 293 30.7 Plus
conv-PA 1092 CG8561-PA 364..710 59..430 267 24 Plus
conv-PA 1092 CG8561-PA 441..889 64..432 267 25.4 Plus
conv-PA 1092 CG8561-PA 247..612 83..428 235 22.8 Plus
conv-PA 1092 CG8561-PA 319..684 83..428 222 23.4 Plus
CG7509-PA 615 CG7509-PA 320..503 77..260 205 30.4 Plus
CG7509-PA 615 CG7509-PA 278..503 83..308 180 24.8 Plus