Clone BO10761 Report

Search the DGRC for BO10761

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:107
Well:61
Vector:pDNR-Dual
Associated Gene/TranscriptRh7-RA
Protein status:BO10761.pep: validated full length
Sequenced Size:1483

Clone Sequence Records

BO10761.3prime Sequence

909 bp (776 high quality bases) assembled on 2006-04-19

> BO10761.3prime
ATGGTCTAGAAAGCTTGCGAACTTACTCTGTTCCATGACGCTGCTAATCG
AATTGTTGATCTCGGCCACCACAACGATCTCCTCGTTCTCCTCCGTCTCC
TCGGGCACCATCATCAGATTGTTGTTCATCAGATAGTTTTCCATGCGGTG
ATCACCCATTCCGCCCTCACCGGTGGTGCTCGTCCTCAATCGGTGGGTGA
ACGACGATCGTGATCGGGTCATGTACGATGATCTGGTCGTGGAGACCCTT
CGCAGCACTCCGCGTCCGTAGAAGAGCATTCGCACCTCGACACGAAACCG
CGGATGGGTGGCCGCATACAAGTAGGGATCCACGCAGGCAGCTGTCTTGC
AGAAGAGCGCGGGTATCATCGATCCCAGTGGCGTTATGTGCCTCTCCAGG
CCGAAGACACCCATCATGGCAACGATGGCGTACGGTGACCAGGCCAGGAA
CCACAAACCAATGATAGCCGCCACAATGAAGGCCAACTTCTGCTCCGTCT
TGGCCTTATCCTTGTTCGATTGTATTCGACTCGCTGTGAAGACCACCTTC
AGTATATAGAAGTAGGAGTACACAATGGAGGTCAGTGGAATGCAGTAGGC
AGCCACAAAGAACAGTGCCATGAAAATGCGAGCTGGCATCTCCTTGTTCA
GATAATCGAAGCTGCAGGTGGTGAGGAAGCCCTCTGGCACATAGACAGAT
AGTCCGATATCCAGGGCCGGCATCACAGCGAACAGGAAGCTGTAGCACCA
GATCAGCAGGATGATCAGGTAGGATCGCAGGCGGGAGCAGCGTCTCAGCG
GTTGCAGTGGATGCACCACCACATTGTACCGATCCAAAGCGATGGCGGTG
AGGGTACCGATGGCACAGGTGCCCACTTAGGCCACCCACAAATCCATAGA
GGCGACGGG

BO10761.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:09:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG5638-PA 1452 Rh7-RA 595..1449 873..19 4275 100 Minus
CG5638-PA 1452 Rh7-RA 563..596 906..873 170 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:15:49
Subject Length Description Subject Range Query Range Score Percent Strand
Rh7-RA 4014 CG5638-RA 1348..2234 906..19 4415 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:15:43
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12165985..12166871 19..906 4390 99.9 Plus
Blast to na_te.dros performed on 2015-02-10 22:15:46 has no hits.

BO10761.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:48:25 Download gff for BO10761.3prime
Subject Subject Range Query Range Percent Splice Strand
Rh7-PA 560..1452 16..909 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:05:06 Download gff for BO10761.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5638-PA 560..1452 16..909 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:47:19 Download gff for BO10761.3prime
Subject Subject Range Query Range Percent Splice Strand
Rh7-RA 1345..2239 14..909 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:58:08 Download gff for BO10761.3prime
Subject Subject Range Query Range Percent Splice Strand
Rh7-RA 1345..2239 14..909 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:58:08 Download gff for BO10761.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 12165980..12166874 14..909 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:47:19 Download gff for BO10761.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12159080..12159974 14..909 99   Plus

BO10761.5prime Sequence

967 bp (799 high quality bases) assembled on 2006-04-19

> BO10761.5prime
GAAGTTATCAGTCGACATGGAGGCCATCATCATGACGACCCTGCCCAACC
TGACAACGGATGCAGGTGACAGCAGCTTCTGGCTAACCGGTGCCCTCTCG
CTCTCCGAGATGTTGGCCAACTCGAGCCACAGCCATTCCACTGGGAGCAC
AACCTCGACGGCTGGGAGTTCGGCCACCGAATCATCCGCTGTGAATGTAG
GCAAGGACCACGACAAGCACGTGAATGACAGCGTTTCCACGGGTCTGAGC
AATTACAGTAATTACCCCAGCTACATTCACTACAGGGACAAGTACGACCT
GAGCTACATTGCCAAGGTGAATCCCTTTTGGCTACAGTTCGAGCCACCTA
AGTCGAGCACCTTCCTGATTATGGCCGCCCTGTATTGCCTGATTTCGGTG
GTGGGATGTGTGGGCAATGCGTTCGTCATCTTTATGTTTGCCAACCGCAA
ATCTCTGCGGACTCCTGCCAATATCCTGGTGATGAATCTGGCCATCTGCG
ACTTTCTGATGCTCATCAAATGCCCGATTGCCATTTACAATAACATCAAA
GAGGGTCCAGCTTTAGGAGACATTGCCTGTCGCCTCTATGGATTTGTGGG
TGGCCTAAGTGGCACCTGTGCCATCGGTACCCTCACCGCCATCGCTTTGG
ATCGGTACAATGTGGTGGTGCATCCACTGCAACCGCTGAGACGCTGCTCC
CGCCTGCGATCCTACCTGATCATCCTGCTGATCTGGTGCTACAGCTTCCT
GTTCGCTGTGATGCCGGCCCTGGATATCGGACTATCTGTCTATGTGCCAG
AGGGCTTCCTCACCACCTGCAGCTTCGATTATCTGAACAAGGAGATGCCA
GCTCGCATTTTCATGGCACTGTTCTTTGTGGCTGGCTACTGCATTCCACT
GACCTCCATTGTGTACTCCTACTTCTATATACTGAAGGGGGGTCTTCCCA
GCGAAGTCGAATACAAT

BO10761.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:09:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG5638-PA 1452 Rh7-RA 1..922 17..938 4585 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:08:39
Subject Length Description Subject Range Query Range Score Percent Strand
Rh7-RA 4014 CG5638-RA 785..1734 16..967 4665 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:08:34
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12166485..12166875 967..575 1820 98.7 Minus
3L 28110227 3L 12167238..12167565 575..248 1640 100 Minus
3L 28110227 3L 12168142..12168375 249..16 1170 100 Minus
Blast to na_te.dros performed 2015-02-12 01:08:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsil\Loa 7779 Dsil\Loa DSV28T24 7779bp AKA(S39346) Derived from X60177 (Rel. 37, Last updated, Version 8). 7088..7134 514..560 109 70.2 Plus

BO10761.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:48:26 Download gff for BO10761.5prime
Subject Subject Range Query Range Percent Splice Strand
Rh7-PA 1..949 17..967 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:05:08 Download gff for BO10761.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5638-PA 1..949 17..967 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:19:00 Download gff for BO10761.5prime
Subject Subject Range Query Range Percent Splice Strand
Rh7-RA 778..1734 10..967 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:05:07 Download gff for BO10761.5prime
Subject Subject Range Query Range Percent Splice Strand
Rh7-RA 778..1734 10..967 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:05:07 Download gff for BO10761.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 12166485..12166874 576..967 98 <- Minus
3L 12167238..12167563 250..575 100 <- Minus
3L 12168142..12168380 11..249 98 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:19:00 Download gff for BO10761.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12160338..12160663 250..575 100 <- Minus
arm_3L 12161242..12161480 11..249 98 <- Minus
arm_3L 12159585..12159974 576..967 98 <- Minus

BO10761.complete Sequence

1483 bp (1483 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ631868

> BO10761.complete
GAAGTTATCAGTCGACATGGAGGCCATCATCATGACGACCCTGCCCAACC
TGACAACGGATGCAGGTGACAGCAGCTTCTGGCTAACCGGTGCCCTCTCG
CTCTCCGAGATGTTGGCCAACTCGAGCCACAGCCATTCCACTGGGAGCAC
AACCTCGACGGCTGGGAGTTCGGCCACCGAATCATCCGCTGTGAATGTAG
GCAAGGACCACGACAAGCACGTGAATGACAGCGTTTCCACGGGTCTGAGC
AATTACAGTAATTACCCCAGCTACATTCACTACAGGGACAAGTACGACCT
GAGCTACATTGCCAAGGTGAATCCCTTTTGGCTACAGTTCGAGCCACCTA
AGTCGAGCACCTTCCTGATTATGGCCGCCCTGTATTGCCTGATTTCGGTG
GTGGGATGTGTGGGCAATGCGTTCGTCATCTTTATGTTTGCCAACCGCAA
ATCTCTGCGGACTCCTGCCAATATCCTGGTGATGAATCTGGCCATCTGCG
ACTTTCTGATGCTCATCAAATGCCCGATTGCCATTTACAATAACATCAAA
GAGGGTCCAGCTTTAGGAGACATTGCCTGTCGCCTCTATGGATTTGTGGG
TGGCCTAAGTGGCACCTGTGCCATCGGTACCCTCACCGCCATCGCTTTGG
ATCGGTACAATGTGGTGGTGCATCCACTGCAACCGCTGAGACGCTGCTCC
CGCCTGCGATCCTACCTGATCATCCTGCTGATCTGGTGCTACAGCTTCCT
GTTCGCTGTGATGCCGGCCCTGGATATCGGACTATCTGTCTATGTGCCAG
AGGGCTTCCTCACCACCTGCAGCTTCGATTATCTGAACAAGGAGATGCCA
GCTCGCATTTTCATGGCACTGTTCTTTGTGGCTGCCTACTGCATTCCACT
GACCTCCATTGTGTACTCCTACTTCTATATACTGAAGGTGGTCTTCACAG
CGAGTCGAATACAATCGAACAAGGATAAGGCCAAGACGGAGCAGAAGTTG
GCCTTCATTGTGGCGGCTATCATTGGTTTGTGGTTCCTGGCCTGGTCACC
GTACGCCATCGTTGCCATGATGGGTGTCTTCGGCCTGGAGAGGCACATAA
CGCCACTGGGATCGATGATACCCGCGCTCTTCTGCAAGACAGCTGCCTGC
GTGGATCCCTACTTGTATGCGGCCACCCATCCGCGGTTTCGTGTCGAGGT
GCGAATGCTCTTCTACGGACGCGGAGTGCTGCGAAGGGTCTCCACGACCA
GATCATCGTACATGACCCGATCACGATCGTCGTTCACCCACCGATTGAGG
ACGAGCACCACCGGTGAGGGCGGAATGGGTGATCACCGCATGGAAAACTA
TCTGATGAACAACAATCTGATGATGGTGCCCGAGGAGACGGAGGAGAACG
AGGAGATCGTTGTGGTGGCCGAGATCAACAATTCGATTAGCAGCGTCATG
GAACAGAGTAAGTTCGCAAGCTTTCTAGACCAT

BO10761.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:03:37
Subject Length Description Subject Range Query Range Score Percent Strand
Rh7-RA 1452 CG5638-PA 1..1449 17..1465 7245 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:03:37
Subject Length Description Subject Range Query Range Score Percent Strand
Rh7-RA 4014 CG5638-RA 785..2234 16..1465 7250 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:03:35
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12165985..12166875 1465..575 4455 100 Minus
3L 28110227 3L 12167238..12167565 575..248 1640 100 Minus
3L 28110227 3L 12168142..12168375 249..16 1170 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:03:36 has no hits.

BO10761.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:48:59 Download gff for BO10761.complete
Subject Subject Range Query Range Percent Splice Strand
Rh7-RA 1..1452 17..1468 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:20:22 Download gff for BO10761.complete
Subject Subject Range Query Range Percent Splice Strand
Rh7-RA 778..2239 10..1470 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:23 Download gff for BO10761.complete
Subject Subject Range Query Range Percent Splice Strand
Rh7-RA 786..2234 17..1467 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:48:59 Download gff for BO10761.complete
Subject Subject Range Query Range Percent Splice Strand
Rh7-RA 778..2239 10..1470 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:09:23 Download gff for BO10761.complete
Subject Subject Range Query Range Percent Splice Strand
Rh7-RA 786..2234 17..1467 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:09:23 Download gff for BO10761.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12165982..12166874 576..1467 99 <- Minus
3L 12167238..12167563 250..575 100 <- Minus
3L 12168142..12168374 17..249 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:23 Download gff for BO10761.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12161242..12161474 17..249 100   Minus
arm_3L 12159082..12159974 576..1467 99 <- Minus
arm_3L 12160338..12160663 250..575 100 <- Minus

BO10761.pep Sequence

Translation from 16 to 1483

> BO10761.pep
MEAIIMTTLPNLTTDAGDSSFWLTGALSLSEMLANSSHSHSTGSTTSTAG
SSATESSAVNVGKDHDKHVNDSVSTGLSNYSNYPSYIHYRDKYDLSYIAK
VNPFWLQFEPPKSSTFLIMAALYCLISVVGCVGNAFVIFMFANRKSLRTP
ANILVMNLAICDFLMLIKCPIAIYNNIKEGPALGDIACRLYGFVGGLSGT
CAIGTLTAIALDRYNVVVHPLQPLRRCSRLRSYLIILLIWCYSFLFAVMP
ALDIGLSVYVPEGFLTTCSFDYLNKEMPARIFMALFFVAAYCIPLTSIVY
SYFYILKVVFTASRIQSNKDKAKTEQKLAFIVAAIIGLWFLAWSPYAIVA
MMGVFGLERHITPLGSMIPALFCKTAACVDPYLYAATHPRFRVEVRMLFY
GRGVLRRVSTTRSSYMTRSRSSFTHRLRTSTTGEGGMGDHRMENYLMNNN
LMMVPEETEENEEIVVVAEINNSISSVMEQSKFASFLDH

BO10761.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:31:12
Subject Length Description Subject Range Query Range Score Percent Strand
Rh7-PA 483 CG5638-PA 1..483 1..483 2499 100 Plus
Rh3-PA 383 CG10888-PA 47..350 105..396 567 37.7 Plus
Rh4-PA 378 CG9668-PA 43..370 105..420 547 35.5 Plus
Rh5-PB 382 CG5279-PB 12..362 68..414 508 33.4 Plus
Rh5-PA 382 CG5279-PA 12..362 68..414 508 33.4 Plus