Clone Sequence Records
BO10761.3prime Sequence
909 bp (776 high quality bases) assembled on 2006-04-19
> BO10761.3prime
ATGGTCTAGAAAGCTTGCGAACTTACTCTGTTCCATGACGCTGCTAATCG
AATTGTTGATCTCGGCCACCACAACGATCTCCTCGTTCTCCTCCGTCTCC
TCGGGCACCATCATCAGATTGTTGTTCATCAGATAGTTTTCCATGCGGTG
ATCACCCATTCCGCCCTCACCGGTGGTGCTCGTCCTCAATCGGTGGGTGA
ACGACGATCGTGATCGGGTCATGTACGATGATCTGGTCGTGGAGACCCTT
CGCAGCACTCCGCGTCCGTAGAAGAGCATTCGCACCTCGACACGAAACCG
CGGATGGGTGGCCGCATACAAGTAGGGATCCACGCAGGCAGCTGTCTTGC
AGAAGAGCGCGGGTATCATCGATCCCAGTGGCGTTATGTGCCTCTCCAGG
CCGAAGACACCCATCATGGCAACGATGGCGTACGGTGACCAGGCCAGGAA
CCACAAACCAATGATAGCCGCCACAATGAAGGCCAACTTCTGCTCCGTCT
TGGCCTTATCCTTGTTCGATTGTATTCGACTCGCTGTGAAGACCACCTTC
AGTATATAGAAGTAGGAGTACACAATGGAGGTCAGTGGAATGCAGTAGGC
AGCCACAAAGAACAGTGCCATGAAAATGCGAGCTGGCATCTCCTTGTTCA
GATAATCGAAGCTGCAGGTGGTGAGGAAGCCCTCTGGCACATAGACAGAT
AGTCCGATATCCAGGGCCGGCATCACAGCGAACAGGAAGCTGTAGCACCA
GATCAGCAGGATGATCAGGTAGGATCGCAGGCGGGAGCAGCGTCTCAGCG
GTTGCAGTGGATGCACCACCACATTGTACCGATCCAAAGCGATGGCGGTG
AGGGTACCGATGGCACAGGTGCCCACTTAGGCCACCCACAAATCCATAGA
GGCGACGGG
BO10761.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:09:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5638-PA | 1452 | Rh7-RA | 595..1449 | 873..19 | 4275 | 100 | Minus |
CG5638-PA | 1452 | Rh7-RA | 563..596 | 906..873 | 170 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:15:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rh7-RA | 4014 | CG5638-RA | 1348..2234 | 906..19 | 4415 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:15:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12165985..12166871 | 19..906 | 4390 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:15:46 has no hits.
BO10761.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:48:25 Download gff for
BO10761.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rh7-PA | 560..1452 | 16..909 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:05:06 Download gff for
BO10761.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5638-PA | 560..1452 | 16..909 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:47:19 Download gff for
BO10761.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rh7-RA | 1345..2239 | 14..909 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:58:08 Download gff for
BO10761.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rh7-RA | 1345..2239 | 14..909 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:58:08 Download gff for
BO10761.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12165980..12166874 | 14..909 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:47:19 Download gff for
BO10761.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12159080..12159974 | 14..909 | 99 | | Plus |
BO10761.5prime Sequence
967 bp (799 high quality bases) assembled on 2006-04-19
> BO10761.5prime
GAAGTTATCAGTCGACATGGAGGCCATCATCATGACGACCCTGCCCAACC
TGACAACGGATGCAGGTGACAGCAGCTTCTGGCTAACCGGTGCCCTCTCG
CTCTCCGAGATGTTGGCCAACTCGAGCCACAGCCATTCCACTGGGAGCAC
AACCTCGACGGCTGGGAGTTCGGCCACCGAATCATCCGCTGTGAATGTAG
GCAAGGACCACGACAAGCACGTGAATGACAGCGTTTCCACGGGTCTGAGC
AATTACAGTAATTACCCCAGCTACATTCACTACAGGGACAAGTACGACCT
GAGCTACATTGCCAAGGTGAATCCCTTTTGGCTACAGTTCGAGCCACCTA
AGTCGAGCACCTTCCTGATTATGGCCGCCCTGTATTGCCTGATTTCGGTG
GTGGGATGTGTGGGCAATGCGTTCGTCATCTTTATGTTTGCCAACCGCAA
ATCTCTGCGGACTCCTGCCAATATCCTGGTGATGAATCTGGCCATCTGCG
ACTTTCTGATGCTCATCAAATGCCCGATTGCCATTTACAATAACATCAAA
GAGGGTCCAGCTTTAGGAGACATTGCCTGTCGCCTCTATGGATTTGTGGG
TGGCCTAAGTGGCACCTGTGCCATCGGTACCCTCACCGCCATCGCTTTGG
ATCGGTACAATGTGGTGGTGCATCCACTGCAACCGCTGAGACGCTGCTCC
CGCCTGCGATCCTACCTGATCATCCTGCTGATCTGGTGCTACAGCTTCCT
GTTCGCTGTGATGCCGGCCCTGGATATCGGACTATCTGTCTATGTGCCAG
AGGGCTTCCTCACCACCTGCAGCTTCGATTATCTGAACAAGGAGATGCCA
GCTCGCATTTTCATGGCACTGTTCTTTGTGGCTGGCTACTGCATTCCACT
GACCTCCATTGTGTACTCCTACTTCTATATACTGAAGGGGGGTCTTCCCA
GCGAAGTCGAATACAAT
BO10761.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:09:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5638-PA | 1452 | Rh7-RA | 1..922 | 17..938 | 4585 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:08:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rh7-RA | 4014 | CG5638-RA | 785..1734 | 16..967 | 4665 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:08:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12166485..12166875 | 967..575 | 1820 | 98.7 | Minus |
3L | 28110227 | 3L | 12167238..12167565 | 575..248 | 1640 | 100 | Minus |
3L | 28110227 | 3L | 12168142..12168375 | 249..16 | 1170 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 01:08:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsil\Loa | 7779 | Dsil\Loa DSV28T24 7779bp AKA(S39346) Derived from X60177 (Rel. 37, Last updated, Version 8). | 7088..7134 | 514..560 | 109 | 70.2 | Plus |
BO10761.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:48:26 Download gff for
BO10761.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rh7-PA | 1..949 | 17..967 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:05:08 Download gff for
BO10761.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5638-PA | 1..949 | 17..967 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:19:00 Download gff for
BO10761.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rh7-RA | 778..1734 | 10..967 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:05:07 Download gff for
BO10761.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rh7-RA | 778..1734 | 10..967 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:05:07 Download gff for
BO10761.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12166485..12166874 | 576..967 | 98 | <- | Minus |
3L | 12167238..12167563 | 250..575 | 100 | <- | Minus |
3L | 12168142..12168380 | 11..249 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:19:00 Download gff for
BO10761.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12160338..12160663 | 250..575 | 100 | <- | Minus |
arm_3L | 12161242..12161480 | 11..249 | 98 | <- | Minus |
arm_3L | 12159585..12159974 | 576..967 | 98 | <- | Minus |
BO10761.complete Sequence
1483 bp (1483 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631868
> BO10761.complete
GAAGTTATCAGTCGACATGGAGGCCATCATCATGACGACCCTGCCCAACC
TGACAACGGATGCAGGTGACAGCAGCTTCTGGCTAACCGGTGCCCTCTCG
CTCTCCGAGATGTTGGCCAACTCGAGCCACAGCCATTCCACTGGGAGCAC
AACCTCGACGGCTGGGAGTTCGGCCACCGAATCATCCGCTGTGAATGTAG
GCAAGGACCACGACAAGCACGTGAATGACAGCGTTTCCACGGGTCTGAGC
AATTACAGTAATTACCCCAGCTACATTCACTACAGGGACAAGTACGACCT
GAGCTACATTGCCAAGGTGAATCCCTTTTGGCTACAGTTCGAGCCACCTA
AGTCGAGCACCTTCCTGATTATGGCCGCCCTGTATTGCCTGATTTCGGTG
GTGGGATGTGTGGGCAATGCGTTCGTCATCTTTATGTTTGCCAACCGCAA
ATCTCTGCGGACTCCTGCCAATATCCTGGTGATGAATCTGGCCATCTGCG
ACTTTCTGATGCTCATCAAATGCCCGATTGCCATTTACAATAACATCAAA
GAGGGTCCAGCTTTAGGAGACATTGCCTGTCGCCTCTATGGATTTGTGGG
TGGCCTAAGTGGCACCTGTGCCATCGGTACCCTCACCGCCATCGCTTTGG
ATCGGTACAATGTGGTGGTGCATCCACTGCAACCGCTGAGACGCTGCTCC
CGCCTGCGATCCTACCTGATCATCCTGCTGATCTGGTGCTACAGCTTCCT
GTTCGCTGTGATGCCGGCCCTGGATATCGGACTATCTGTCTATGTGCCAG
AGGGCTTCCTCACCACCTGCAGCTTCGATTATCTGAACAAGGAGATGCCA
GCTCGCATTTTCATGGCACTGTTCTTTGTGGCTGCCTACTGCATTCCACT
GACCTCCATTGTGTACTCCTACTTCTATATACTGAAGGTGGTCTTCACAG
CGAGTCGAATACAATCGAACAAGGATAAGGCCAAGACGGAGCAGAAGTTG
GCCTTCATTGTGGCGGCTATCATTGGTTTGTGGTTCCTGGCCTGGTCACC
GTACGCCATCGTTGCCATGATGGGTGTCTTCGGCCTGGAGAGGCACATAA
CGCCACTGGGATCGATGATACCCGCGCTCTTCTGCAAGACAGCTGCCTGC
GTGGATCCCTACTTGTATGCGGCCACCCATCCGCGGTTTCGTGTCGAGGT
GCGAATGCTCTTCTACGGACGCGGAGTGCTGCGAAGGGTCTCCACGACCA
GATCATCGTACATGACCCGATCACGATCGTCGTTCACCCACCGATTGAGG
ACGAGCACCACCGGTGAGGGCGGAATGGGTGATCACCGCATGGAAAACTA
TCTGATGAACAACAATCTGATGATGGTGCCCGAGGAGACGGAGGAGAACG
AGGAGATCGTTGTGGTGGCCGAGATCAACAATTCGATTAGCAGCGTCATG
GAACAGAGTAAGTTCGCAAGCTTTCTAGACCAT
BO10761.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:03:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rh7-RA | 1452 | CG5638-PA | 1..1449 | 17..1465 | 7245 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:03:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rh7-RA | 4014 | CG5638-RA | 785..2234 | 16..1465 | 7250 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:03:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12165985..12166875 | 1465..575 | 4455 | 100 | Minus |
3L | 28110227 | 3L | 12167238..12167565 | 575..248 | 1640 | 100 | Minus |
3L | 28110227 | 3L | 12168142..12168375 | 249..16 | 1170 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:03:36 has no hits.
BO10761.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:48:59 Download gff for
BO10761.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rh7-RA | 1..1452 | 17..1468 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:20:22 Download gff for
BO10761.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rh7-RA | 778..2239 | 10..1470 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:23 Download gff for
BO10761.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rh7-RA | 786..2234 | 17..1467 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:48:59 Download gff for
BO10761.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rh7-RA | 778..2239 | 10..1470 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:09:23 Download gff for
BO10761.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rh7-RA | 786..2234 | 17..1467 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:09:23 Download gff for
BO10761.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12165982..12166874 | 576..1467 | 99 | <- | Minus |
3L | 12167238..12167563 | 250..575 | 100 | <- | Minus |
3L | 12168142..12168374 | 17..249 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:23 Download gff for
BO10761.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12161242..12161474 | 17..249 | 100 | | Minus |
arm_3L | 12159082..12159974 | 576..1467 | 99 | <- | Minus |
arm_3L | 12160338..12160663 | 250..575 | 100 | <- | Minus |
BO10761.pep Sequence
Translation from 16 to 1483
> BO10761.pep
MEAIIMTTLPNLTTDAGDSSFWLTGALSLSEMLANSSHSHSTGSTTSTAG
SSATESSAVNVGKDHDKHVNDSVSTGLSNYSNYPSYIHYRDKYDLSYIAK
VNPFWLQFEPPKSSTFLIMAALYCLISVVGCVGNAFVIFMFANRKSLRTP
ANILVMNLAICDFLMLIKCPIAIYNNIKEGPALGDIACRLYGFVGGLSGT
CAIGTLTAIALDRYNVVVHPLQPLRRCSRLRSYLIILLIWCYSFLFAVMP
ALDIGLSVYVPEGFLTTCSFDYLNKEMPARIFMALFFVAAYCIPLTSIVY
SYFYILKVVFTASRIQSNKDKAKTEQKLAFIVAAIIGLWFLAWSPYAIVA
MMGVFGLERHITPLGSMIPALFCKTAACVDPYLYAATHPRFRVEVRMLFY
GRGVLRRVSTTRSSYMTRSRSSFTHRLRTSTTGEGGMGDHRMENYLMNNN
LMMVPEETEENEEIVVVAEINNSISSVMEQSKFASFLDH
BO10761.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:31:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rh7-PA | 483 | CG5638-PA | 1..483 | 1..483 | 2499 | 100 | Plus |
Rh3-PA | 383 | CG10888-PA | 47..350 | 105..396 | 567 | 37.7 | Plus |
Rh4-PA | 378 | CG9668-PA | 43..370 | 105..420 | 547 | 35.5 | Plus |
Rh5-PB | 382 | CG5279-PB | 12..362 | 68..414 | 508 | 33.4 | Plus |
Rh5-PA | 382 | CG5279-PA | 12..362 | 68..414 | 508 | 33.4 | Plus |