Clone Sequence Records
BO10771.3prime Sequence
890 bp (874 high quality bases) assembled on 2006-04-19
> BO10771.3prime
ATGGTCTAGAAAGCTTGCCCTGAGCAGGCAGAGCTTGCACTGGTAGGGCT
TCTCGCCACTGTGGATTCGCAGGTGCTTGGTGAGGGTGCTGCTGTCCGAG
AAGGACTTCTTGCACGAGGAGCAGCGGTACGGCCGCTCGCCGGAGTGGGT
GCGCATGTGCGTGGTGACACTGGAACTCTGCGAGAATCTCCGGTCGCAGA
TGGGGCAGCGGAACGGCTTCTGGCCGGTGTGTGTGCGTACGTGAGCCGTC
AGGTTGGCTGCCTGCGAGAAGCTCTTGTTGCAGTCGGGGCATCGATAGGG
TCTTTCGCCGGAATGGGTCCGCAGATGGGTCTTGAGCGTGCTGGGCCGGG
CATATGTCTTTCCGCACAACCGGCATAGATTGGGTTTCATCTCGCCGCCA
CTGCTGCCCTCATCGCCGTCCAGATCCTCGTTGCTATCCTCCTCGTCCTC
GAAGGCGGATAGACTTAAGCCCAGGGCGGCTGCCTGATAGCTGGTGGGAC
TTTTGTGGGGCGGTGTGTATCCCTGATTGCCCACCCCCGTGGGATAGTAG
CCAGCCAAAGAGGAGTTGGCCGGCGGCGATGGCGACTCCTTTTCGCCCAC
CGTCAGCGGTGGCAGGGCACCCAGACCCGTGGGAGCCGGTGCCCGAAAAT
CCGCTGTAAAGGAATATGTGGCCGAGGCAGGATAGTGACCGGGACTCAGC
AGCGGTGGGTATAGCACATTTACCGCCGCTGCTGCTGCTGCCGCCGAGGT
GGAGTTACTGGGTGGCGTCCAGTTCATCTGGGAGCACTGCATTGGCACGC
CGCCTGCATCACCGGCACCGTAGCCATGGTGCATGGTCATGTTCATGCTG
ACGTTCACGCTCATGCTGGGATACATGGCTGCCGCCGGAA
BO10771.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:10:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7672-PB | 1674 | gl-RB | 801..1671 | 889..19 | 4355 | 100 | Minus |
| CG7672-PA | 1815 | gl-RA | 801..1670 | 889..20 | 4350 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:33:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gl-RB | 3399 | CG7672-RB | 1114..1984 | 889..19 | 4355 | 100 | Minus |
| gl-RC | 3003 | CG7672-RC | 1114..1983 | 889..20 | 4350 | 100 | Minus |
| gl-RA | 3003 | CG7672-RA | 1114..1983 | 889..20 | 4350 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:33:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18369342..18370212 | 19..889 | 4355 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 18:33:10 has no hits.
BO10771.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:48:46 Download gff for
BO10771.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7672-PB | 802..1674 | 16..888 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:05:37 Download gff for
BO10771.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7672-PB | 802..1674 | 16..888 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:13:25 Download gff for
BO10771.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gl-RB | 1113..1984 | 19..890 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:22:43 Download gff for
BO10771.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gl-RB | 1113..1984 | 19..890 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:22:43 Download gff for
BO10771.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18369342..18370212 | 19..890 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:13:25 Download gff for
BO10771.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14195064..14195934 | 19..890 | 99 | | Plus |
BO10771.5prime Sequence
921 bp (882 high quality bases) assembled on 2006-04-19
> BO10771.5prime
GAAGTTATCAGTCGACATGGGATTGTTATATAAGGGTTCCAAACTCCTGA
ACACAATTCTGGATTCCCTGGAAGATCAAGAGGGTGGAGCTATGTACATA
TCGTGCGATGTCTCAAACGGCGGTCCTGTGGAACCAGAGACGGGCTATGT
GCCCAACAATCCCCTGTTCGGCCTGGCGCTGGACAGCCCTCAGCAAGAGT
GCGCCGCTTCCTGCGTCGGCTGCCTATCCTGCCAGGGCAGCACCGCCCTG
CCCATCTCCTCGCTCACCAGCAGCGACTTCGACTGCGGCGGCTGTTTCGA
TCCCACGATTGGAGTGGGCGTGGGCATCGGTGGCGGCCACATCCAGATCA
GCACGACACCACCGGCGAGCAGCGGCAACGGGAGCAGCAACAACGGTGCC
GGAGGAGGCTCCTCGGGTAATCACGGCTACTGGAGCACCGACGAGATGGC
TTCCACATTTCCCGGCCTACCGCCGCTGGACATCGATCCGCTGCCCAGCC
TGTTCCCATTCTCGCCCTGCGGCGCTTCCTACAACTTTGCCGCCGGCAAT
CCGCACCAGGCCGCCTCACTCTCCTACACAGTGCATCCGCACCAGATGCT
CATTTCGCCGAACTCCCACAATCATGGCCAGATGCACTCGCAGCACCAGC
AGCACCAGCACCAGCAATCCCAAGTCCAGGCATCGCACGTAGGCAACTCT
CTCCTCCAAAGCAGTGGTGGCAACAATATCGGCAGTAATGGTAGTGCCGG
AGGAGTGGCCAACGCTGCCAGTTGCTACTATGAAACCAGTGCTGGAACGG
CCGCACCACCTCCTCCTCCGGCGGCAGCCATGTATCCCAGCATGAGCGTG
AACGTCAGCATGAACATGACCATGCACCATGGCTACGGTGCCGGTGATGC
AGGCGGCGTGCCAATGCAGTG
BO10771.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:10:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7672-PA | 1815 | gl-RA | 1..905 | 17..921 | 4525 | 100 | Plus |
| CG7672-PB | 1674 | gl-RB | 1..905 | 17..921 | 4525 | 100 | Plus |
| CG1133-PA | 1830 | opa-RA | 1407..1433 | 640..666 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:45:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gl-RC | 3003 | CG7672-RC | 313..1218 | 16..921 | 4530 | 100 | Plus |
| gl-RB | 3399 | CG7672-RB | 313..1218 | 16..921 | 4530 | 100 | Plus |
| gl-RA | 3003 | CG7672-RA | 313..1218 | 16..921 | 4530 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:45:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18370108..18370838 | 921..191 | 3655 | 100 | Minus |
| 3R | 32079331 | 3R | 18371319..18371450 | 193..62 | 660 | 100 | Minus |
| 3R | 32079331 | 3R | 18371733..18371779 | 62..16 | 235 | 100 | Minus |
Blast to na_te.dros performed 2015-02-13 09:45:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1527..1577 | 617..667 | 120 | 70.6 | Plus |
BO10771.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:48:48 Download gff for
BO10771.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7672-PA | 1..905 | 17..921 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:05:38 Download gff for
BO10771.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7672-PB | 1..905 | 17..921 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:46:08 Download gff for
BO10771.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gl-RA | 307..1218 | 8..921 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:09:41 Download gff for
BO10771.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gl-RA | 307..1218 | 8..921 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:09:41 Download gff for
BO10771.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18371733..18371785 | 8..62 | 94 | | Minus |
| 3R | 18370108..18370835 | 194..921 | 100 | <- | Minus |
| 3R | 18371319..18371449 | 63..193 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:46:08 Download gff for
BO10771.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14195830..14196557 | 194..921 | 100 | <- | Minus |
| arm_3R | 14197041..14197171 | 63..193 | 100 | <- | Minus |
| arm_3R | 14197455..14197507 | 8..62 | 94 | | Minus |
BO10771.complete Sequence
1705 bp (1705 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631870
> BO10771.complete
GAAGTTATCAGTCGACATGGGATTGTTATATAAGGGTTCCAAACTCCTGA
ACACAATTCTGGATTCCCTGGAAGATCAAGAGGGTGGAGCTATGTACATA
TCGTGCGATGTCTCAAACGGCGGTCCTGTGGAACCAGAGACGGGCTATGT
GCCCAACAATCCCCTGTTCGGCCTGGCGCTGGACAGCCCTCAGCAAGAGT
GCGCCGCTTCCTGCGTCGGCTGCCTATCCTGCCAGGGCAGCACCGCCCTG
CCCATCTCCTCGCTCACCAGCAGCGACTTCGACTGCGGCGGCTGTTTCGA
TCCCACGATTGGAGTGGGCGTGGGCATCGGTGGCGGCCACATCCAGATCA
GCACGACACCACCGGCGAGCAGCGGCAACGGGAGCAGCAACAACGGTGCC
GGAGGAGGCTCCTCGGGTAATCACGGCTACTGGAGCACCGACGAGATGGC
TTCCACATTTCCCGGCCTACCGCCGCTGGACATCGATCCGCTGCCCAGCC
TGTTCCCATTCTCGCCCTGCGGCGCTTCCTACAACTTTGCCGCCGGCAAT
CCGCACCAGGCCGCCTCACTCTCCTACACAGTGCATCCGCACCAGATGCT
CATTTCGCCGAACTCCCACAATCATGGCCAGATGCACTCGCAGCACCAGC
AGCACCAGCACCAGCAATCCCAAGTCCAGGCATCGCACGTAGGCAACTCT
CTCCTCCAAAGCAGTGGTGGCAACAATATCGGCAGTAATGGTAGTGCCGG
AGGAGTGGCCAACGCTGCCAGTTGCTACTATGAAACCAGTGCTGGAACGG
CCGCACCACCTCCTCCTCCGGCGGCAGCCATGTATCCCAGCATGAGCGTG
AACGTCAGCATGAACATGACCATGCACCATGGCTACGGTGCCGGTGATGC
AGGCGGCGTGCCAATGCAGTGCTCCCAGATGAACTGGACGCCACCCAGTA
ACTCCACCTCGGCGGCAGCAGCAGCAGCGGCGGTAAATGTGCTATACCCA
CCGCTGCTGAGTCCCGGTCACTATCCTGCCTCGGCCACATATTCCTTTAC
AGCGGATTTTCGGGCACCGGCTCCCACGGGTCTGGGTGCCCTGCCACCGC
TGACGGTGGGCGAAAAGGAGTCGCCATCGCCGCCGGCCAACTCCTCTTTG
GCTGGCTACTATCCCACGGGGGTGGGCAATCAGGGATACACACCGCCCCA
CAAAAGTCCCACCAGCTATCAGGCAGCCGCCCTGGGCTTAAGTCTATCCG
CCTTCGAGGACGAGGAGGATAGCAACGAGGATCTGGACGGCGATGAGGGC
AGCAGTGGCGGCGAGATGAAACCCAATCTATGCCGGTTGTGCGGAAAGAC
ATATGCCCGGCCCAGCACGCTCAAGACCCATCTGCGGACCCATTCCGGCG
AAAGACCCTATCGATGCCCCGACTGCAACAAGAGCTTCTCGCAGGCAGCC
AACCTGACGGCTCACGTACGCACACACACCGGCCAGAAGCCGTTCCGCTG
CCCCATCTGCGACCGGAGATTCTCGCAGAGTTCCAGTGTCACCACGCACA
TGCGCACCCACTCCGGCGAGCGGCCGTACCGCTGCTCCTCGTGCAAGAAG
TCCTTCTCGGACAGCAGCACCCTCACCAAGCACCTGCGAATCCACAGTGG
CGAGAAGCCCTACCAGTGCAAGCTCTGCCTGCTCAGGGCAAGCTTTCTAG
ACCAT
BO10771.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:39:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gl-RB | 1674 | CG7672-PB | 1..1671 | 17..1687 | 8355 | 100 | Plus |
| gl-RC | 2040 | CG7672-PC | 1..1670 | 17..1686 | 8350 | 100 | Plus |
| gl-RA | 1815 | CG7672-PA | 1..1670 | 17..1686 | 8350 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:39:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gl-RB | 3399 | CG7672-RB | 313..1984 | 16..1687 | 8360 | 100 | Plus |
| gl-RC | 3003 | CG7672-RC | 313..1983 | 16..1686 | 8355 | 100 | Plus |
| gl-RA | 3003 | CG7672-RA | 313..1983 | 16..1686 | 8355 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:39:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18369342..18370838 | 1687..191 | 7485 | 100 | Minus |
| 3R | 32079331 | 3R | 18371319..18371450 | 193..62 | 660 | 100 | Minus |
| 3R | 32079331 | 3R | 18371733..18371779 | 62..16 | 235 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 20:39:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1527..1577 | 617..667 | 120 | 70.6 | Plus |
BO10771.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:49:00 Download gff for
BO10771.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gl-RB | 1..1674 | 17..1690 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:20:24 Download gff for
BO10771.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gl-RB | 286..1963 | 8..1687 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:10:01 Download gff for
BO10771.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gl-RB | 314..1984 | 17..1689 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:49:00 Download gff for
BO10771.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gl-RB | 286..1963 | 8..1687 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:25:42 Download gff for
BO10771.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gl-RB | 314..1984 | 17..1689 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:25:42 Download gff for
BO10771.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18369339..18370835 | 194..1689 | 99 | <- | Minus |
| 3R | 18371319..18371449 | 63..193 | 100 | <- | Minus |
| 3R | 18371733..18371778 | 17..62 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:10:01 Download gff for
BO10771.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14195061..14196557 | 194..1689 | 99 | <- | Minus |
| arm_3R | 14197041..14197171 | 63..193 | 100 | <- | Minus |
| arm_3R | 14197455..14197500 | 17..62 | 100 | | Minus |
BO10771.pep Sequence
Translation from 16 to 1705
> BO10771.pep
MGLLYKGSKLLNTILDSLEDQEGGAMYISCDVSNGGPVEPETGYVPNNPL
FGLALDSPQQECAASCVGCLSCQGSTALPISSLTSSDFDCGGCFDPTIGV
GVGIGGGHIQISTTPPASSGNGSSNNGAGGGSSGNHGYWSTDEMASTFPG
LPPLDIDPLPSLFPFSPCGASYNFAAGNPHQAASLSYTVHPHQMLISPNS
HNHGQMHSQHQQHQHQQSQVQASHVGNSLLQSSGGNNIGSNGSAGGVANA
ASCYYETSAGTAAPPPPPAAAMYPSMSVNVSMNMTMHHGYGAGDAGGVPM
QCSQMNWTPPSNSTSAAAAAAAVNVLYPPLLSPGHYPASATYSFTADFRA
PAPTGLGALPPLTVGEKESPSPPANSSLAGYYPTGVGNQGYTPPHKSPTS
YQAAALGLSLSAFEDEEDSNEDLDGDEGSSGGEMKPNLCRLCGKTYARPS
TLKTHLRTHSGERPYRCPDCNKSFSQAANLTAHVRTHTGQKPFRCPICDR
RFSQSSSVTTHMRTHSGERPYRCSSCKKSFSDSSTLTKHLRIHSGEKPYQ
CKLCLLRASFLDH
BO10771.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:24:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gl-PC | 679 | CG7672-PC | 1..559 | 1..559 | 3022 | 99.8 | Plus |
| gl-PA | 604 | CG7672-PA | 1..559 | 1..559 | 3022 | 99.8 | Plus |
| gl-PB | 557 | CG7672-PB | 1..557 | 1..557 | 3020 | 100 | Plus |
| Kr-PB | 502 | CG3340-PB | 52..342 | 310..557 | 370 | 29.9 | Plus |
| Kr-PA | 502 | CG3340-PA | 52..342 | 310..557 | 370 | 29.9 | Plus |
| Kr-PB | 502 | CG3340-PB | 59..352 | 248..539 | 299 | 29.2 | Plus |
