Clone Sequence Records
BO10774.3prime Sequence
911 bp (791 high quality bases) assembled on 2006-04-19
> BO10774.3prime
ATGGTCTAGAAAGCTTGCTGTCAGGTCCTGCTGCGAATCTATCGAGAACA
GCTCCTTGTACAGCGCCGGAAAAACGACATTCGGGTGCTGCAGCTTGAAC
TTGCTCAGCGATTCCATGTGCAAGATGGAAATATCGCGGAAATTGGGTAT
ATTGTTCAGCAGTGTGTCCAGCACGGTGACATCGCCCTTGAGCGGCGCAT
GATTCGTTTCCAGCTCCTGCCGGATCGCATTCATGCTCAGATTGAAAAGC
CTCTGTATTTCCGTATTACCACGCACTCCATTGCGTTCTGGCCAGAGCAG
CACTAAGCTCTGATACAGCGCCAGTTCGGTTTCAGTCAGTTTGAGTTCGG
CTATCGACTTGGCCGTTTGGAAGATGCGCGACACCAGACGCATCTCTTCC
GAGTCGGATGTGTAGAACGCCTCCTGGGGCAGCATCACGTCGCCGTAGAG
AACCGCGTTCTGTGAGAGATCAAGCAGTCTGGACATGCGAACAATCGCCA
GCTCAAAGGAGCCCGTCTTCAGCAGTAATATCTGATCGTCCTGACTTAGG
CGCATGAATCCCGGTATGAGCTTAGCAAATTCGATTATGTTCTGTATCAT
TTGTGTAAGCTTCTCGGCGCAGTCCAGCCAGAGTTCCTCTTGGCCCAGAT
TCTTGTAGTAGAGAATGCGCGACACATCCGGCTGCTTTCGGAACATGTCG
TGCACAGCTTCCAGTTTGGTATTTGTGTTGGCATGCGCCTCCGCCAGCGT
CTTGATCAGCACATCGTTGATATCGCCATCCGCGTGACTAATAAATTCGG
GATCGATTATTGTACTGCGCGGCTCGTAGGTGGTGCTGTCCACGTAGTCC
GCCGAGATGTCGTACTGCATGGGCTGCTGTGGCGTCACGGAGGCCGAGTA
TCCGTAGGGAC
BO10774.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:10:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33183-PC | 2085 | Hr46-RC | 1190..2082 | 911..19 | 4440 | 99.8 | Minus |
| CG33183-PB | 1335 | Hr46-RB | 440..1332 | 911..19 | 4440 | 99.8 | Minus |
| CG33183-PA | 1464 | Hr46-RA | 569..1461 | 911..19 | 4440 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:08:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12912-RB | 6466 | CG12912-RB | 3017..3909 | 911..19 | 4450 | 99.9 | Minus |
| Hr46-RG | 4175 | CG33183-RG | 726..1618 | 911..19 | 4450 | 99.9 | Minus |
| Hr46-RF | 7524 | CG33183-RF | 2616..3508 | 911..19 | 4450 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:07:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10208401..10208646 | 288..533 | 1230 | 100 | Plus |
| 2R | 25286936 | 2R | 10208191..10208343 | 137..289 | 765 | 100 | Plus |
| 2R | 25286936 | 2R | 10208706..10208853 | 532..679 | 740 | 100 | Plus |
| 2R | 25286936 | 2R | 10209101..10209229 | 783..911 | 630 | 99.2 | Plus |
| 2R | 25286936 | 2R | 10208011..10208129 | 19..137 | 595 | 100 | Plus |
| 2R | 25286936 | 2R | 10208920..10209025 | 678..783 | 530 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:07:58 has no hits.
BO10774.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:48:51 Download gff for
BO10774.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hr46-PB | 440..1335 | 15..911 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:05:42 Download gff for
BO10774.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33183-PA | 569..1464 | 15..911 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:27:15 Download gff for
BO10774.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hr46-RH | 2622..3517 | 15..911 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:38:00 Download gff for
BO10774.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hr46-RF | 2616..3511 | 15..911 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:38:00 Download gff for
BO10774.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10208706..10208852 | 532..678 | 100 | <- | Plus |
| 2R | 10208921..10209024 | 679..782 | 100 | <- | Plus |
| 2R | 10209101..10209229 | 783..911 | 99 | | Plus |
| 2R | 10208008..10208128 | 15..136 | 98 | <- | Plus |
| 2R | 10208191..10208341 | 137..287 | 100 | <- | Plus |
| 2R | 10208401..10208644 | 288..531 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:27:15 Download gff for
BO10774.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6096426..6096529 | 679..782 | 100 | <- | Plus |
| arm_2R | 6095513..6095633 | 15..136 | 98 | <- | Plus |
| arm_2R | 6095696..6095846 | 137..287 | 100 | <- | Plus |
| arm_2R | 6095906..6096149 | 288..531 | 100 | <- | Plus |
| arm_2R | 6096211..6096357 | 532..678 | 100 | <- | Plus |
| arm_2R | 6096606..6096734 | 783..911 | 99 | | Plus |
BO10774.5prime Sequence
902 bp (869 high quality bases) assembled on 2006-04-19
> BO10774.5prime
GAAGTTATCAGTCGACATGACAGCTCAAATTGAGATAATTCCATGCAAAG
TCTGCGGCGACAAGTCATCCGGCGTGCATTACGGAGTGATCACCTGCGAG
GGCTGCAAGGGATTCTTTCGAAGATCGCAGAGCTCCGTGGTCAACTACCA
GTGTCCGCGCAACAAGCAATGTGTGGTGGACCGTGTTAATCGCAACCGAT
GTCAATATTGTAGACTGCAAAAGTGCCTAAAACTGGGAATGAGCCGTGAT
GCTGTAAAGTTCGGCAGGATGTCCAAGAAGCAGCGCGAGAAGGTCGAGGA
CGAGGTACGCTTCCATCGGGCCCAGATGCGGGCACAAAGCGACGCGGCAC
CGGATAGCTCCGTATACGACACACAGACGCCCTCGAGCAGCGACCAGCTG
CATCACAACAATTACAACAGCGGCGGCTACTCCAACAACGAGGTGGGCTA
CGGCAGTCCCTACGGATACTCGGCCTCCGTGACGCCACAGCAGACCATGC
AGTACGACATCTCGGCGGACTACGTGGACAGCACCACCTACGAGCCGCGC
AGTACAATAATCGATCCCGAATTTATTAGTCACGCGGATGGCGATATCAA
CGATGTGCTGATCAAGACGCTGGCGGAGGCGCATGCCAACACAAATACCA
AACTGGAAGCTGTGCACGACATGTTCCGAAAGCAGCCGGATGTGTCGCGC
ATTCTCTACTACAAGAATCTGGGCCAAGAGGAACTCTGGCTGGACTGCGC
CGAGAAGCTTACACAAATGATACAGAACATAATCGAATTTGCTAAGCTCA
TACCGGGATTCATGCGCCTAAGTCAGGACGATCAGATATTACTGCTGAAG
ACGGGCTCCTTTGAGCTGGCGATTGTTCGCATGTCCAGACTGCTTGATCT
CT
BO10774.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:10:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33183-PC | 2085 | Hr46-RC | 750..1636 | 16..902 | 4435 | 100 | Plus |
| CG33183-PB | 1335 | Hr46-RB | 1..886 | 17..902 | 4430 | 100 | Plus |
| CG33183-PA | 1464 | Hr46-RA | 530..1015 | 417..902 | 2430 | 100 | Plus |
| CG33183-PA | 1464 | Hr46-RA | 129..528 | 22..421 | 2000 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:24:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12912-RB | 6466 | CG12912-RB | 2577..3463 | 16..902 | 4435 | 100 | Plus |
| Hr46-RE | 6385 | CG33183-RE | 2496..3382 | 16..902 | 4435 | 100 | Plus |
| Hr46-RC | 6466 | CG33183-RC | 2577..3463 | 16..902 | 4435 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:24:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10209880..10210111 | 251..20 | 1160 | 100 | Minus |
| 2R | 25286936 | 2R | 10209440..10209609 | 420..251 | 850 | 100 | Minus |
| 2R | 25286936 | 2R | 10209101..10209268 | 584..417 | 840 | 100 | Minus |
| 2R | 25286936 | 2R | 10208706..10208853 | 835..688 | 740 | 100 | Minus |
| 2R | 25286936 | 2R | 10208920..10209025 | 689..584 | 530 | 100 | Minus |
| 2R | 25286936 | 2R | 10208578..10208646 | 902..834 | 345 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:24:33 has no hits.
BO10774.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:48:52 Download gff for
BO10774.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hr46-PC | 747..1636 | 10..902 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:05:44 Download gff for
BO10774.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33183-PC | 747..1636 | 10..902 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:49:44 Download gff for
BO10774.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12912-RB | 2574..3463 | 10..902 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:42:42 Download gff for
BO10774.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hr46-RC | 2574..3463 | 10..902 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:42:42 Download gff for
BO10774.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10208578..10208644 | 836..902 | 100 | <- | Minus |
| 2R | 10208706..10208852 | 689..835 | 100 | <- | Minus |
| 2R | 10208921..10209024 | 585..688 | 100 | <- | Minus |
| 2R | 10209101..10209264 | 421..584 | 100 | <- | Minus |
| 2R | 10209440..10209608 | 252..420 | 100 | <- | Minus |
| 2R | 10209880..10210111 | 20..251 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:49:44 Download gff for
BO10774.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6096083..6096149 | 836..902 | 100 | <- | Minus |
| arm_2R | 6096211..6096357 | 689..835 | 100 | <- | Minus |
| arm_2R | 6096426..6096529 | 585..688 | 100 | <- | Minus |
| arm_2R | 6096606..6096769 | 421..584 | 100 | <- | Minus |
| arm_2R | 6096945..6097113 | 252..420 | 100 | <- | Minus |
| arm_2R | 6097385..6097616 | 20..251 | 100 | | Minus |
BO10774.complete Sequence
1366 bp assembled on 2006-11-02
GenBank Submission: FJ631871
> BO10774.complete
GAAGTTATCAGTCGACATGACAGCTCAAATTGAGATAATTCCATGCAAAG
TCTGCGGCGACAAGTCATCCGGCGTGCATTACGGAGTGATCACCTGCGAG
GGCTGCAAGGGATTCTTTCGAAGATCGCAGAGCTCCGTGGTCAACTACCA
GTGTCCGCGCAACAAGCAATGTGTGGTGGACCGTGTTAATCGCAACCGAT
GTCAATATTGTAGACTGCAAAAGTGCCTAAAACTGGGAATGAGCCGTGAT
GCTGTAAAGTTCGGCAGGATGTCCAAGAAGCAGCGCGAGAAGGTCGAGGA
CGAGGTACGCTTCCATCGGGCCCAGATGCGGGCACAAAGCGACGCGGCAC
CGGATAGCTCCGTATACGACACACAGACGCCCTCGAGCAGCGACCAGCTG
CATCACAACAATTACAACAGCGGCGGCTACTCCAACAACGAGGTGGGCTA
CGGCAGTCCCTACGGATACTCGGCCTCCGTGACGCCACAGCAGACCATGC
AGTACGACATCTCGGCGGACTACGTGGACAGCACCACCTACGAGCCGCGC
AGTACAATAATCGATCCCGAATTTATTAGTCACGCGGATGGCGATATCAA
CGATGTGCTGATCAAGACGCTGGCGGAGGCGCATGCCAACACAAATACCA
AACTGGAAGCTGTGCACGACATGTTCCGAAAGCAGCCGGATGTGTCGCGC
ATTCTCTACTACAAGAATCTGGGCCAAGAGGAACTCTGGCTGGACTGCGC
CGAGAAGCTTACACAAATGATACAGAACATAATCGAATTTGCTAAGCTCA
TACCGGGATTCATGCGCCTAAGTCAGGACGATCAGATATTACTGCTGAAG
ACGGGCTCCTTTGAGCTGGCGATTGTTCGCATGTCCAGACTGCTTGATCT
CTCACAGAACGCGGTTCTCTACGGCGACGTGATGCTGCCCCAGGAGGCGT
TCTACACATCCGACTCGGAAGAGATGCGTCTGGTGTCGCGCATCTTCCAA
ACGGCCAAGTCGATAGCCGAACTCAAACTGACTGAAACCGAACTGGCGCT
GTATCAGAGCTTAGTGCTGCTCTGGCCAGAACGCAATGGAGTGCGTGGTA
ATACGGAAATACAGAGGCTTTTCAATCTGAGCATGAATGCGATCCGGCAG
GAGCTGGAAACGAATCATGCGCCGCTCAAGGGCGATGTCACCGTGCTGGA
CACACTGCTGAACAATATACCCAATTTCCGCGATATTTCCATCTTGCACA
TGGAATCGCTGAGCAAGTTCAAGCTGCAGCACCCGAATGTCGTTTTTCCG
GCGCTGTACAAGGAGCTGTTCTCGATAGATTCGCAGCAGGACCTGACAGC
AAGCTTTCTAGACCAT
BO10774.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:19:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hr46-RE | 2625 | CG33183-PE | 1290..2622 | 16..1348 | 6665 | 100 | Plus |
| Hr46-RC | 2085 | CG33183-PC | 750..2082 | 16..1348 | 6665 | 100 | Plus |
| Hr46-RD | 1371 | CG33183-PD | 42..1368 | 22..1348 | 6635 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:19:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12912-RB | 6466 | CG12912-RB | 2577..3909 | 16..1348 | 6665 | 100 | Plus |
| Hr46-RE | 6385 | CG33183-RE | 2496..3828 | 16..1348 | 6665 | 100 | Plus |
| Hr46-RC | 6466 | CG33183-RC | 2577..3909 | 16..1348 | 6665 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:19:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10208401..10208646 | 1079..834 | 1230 | 100 | Minus |
| 2R | 25286936 | 2R | 10209880..10210111 | 251..20 | 1160 | 100 | Minus |
| 2R | 25286936 | 2R | 10209440..10209609 | 420..251 | 850 | 100 | Minus |
| 2R | 25286936 | 2R | 10209101..10209268 | 584..417 | 840 | 100 | Minus |
| 2R | 25286936 | 2R | 10208191..10208343 | 1230..1078 | 765 | 100 | Minus |
| 2R | 25286936 | 2R | 10208706..10208853 | 835..688 | 740 | 100 | Minus |
| 2R | 25286936 | 2R | 10208011..10208129 | 1348..1230 | 595 | 100 | Minus |
| 2R | 25286936 | 2R | 10208920..10209025 | 689..584 | 530 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:19:19 has no hits.
BO10774.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:13:34 Download gff for
BO10774.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hr46-RC | 747..2085 | 10..1352 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:32:16 Download gff for
BO10774.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hr46-RB | 86..1424 | 10..1352 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:46:13 Download gff for
BO10774.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12912-RB | 2578..3909 | 17..1350 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:13:35 Download gff for
BO10774.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hr46-RB | 86..1424 | 10..1352 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:50:51 Download gff for
BO10774.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hr46-RC | 2578..3909 | 17..1350 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:50:51 Download gff for
BO10774.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10209880..10210112 | 17..251 | 99 | | Minus |
| 2R | 10209101..10209264 | 421..584 | 100 | <- | Minus |
| 2R | 10209440..10209608 | 252..420 | 100 | <- | Minus |
| 2R | 10208706..10208852 | 689..835 | 100 | <- | Minus |
| 2R | 10208921..10209024 | 585..688 | 100 | <- | Minus |
| 2R | 10208009..10208128 | 1231..1350 | 98 | <- | Minus |
| 2R | 10208191..10208341 | 1080..1230 | 100 | <- | Minus |
| 2R | 10208401..10208644 | 836..1079 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:46:13 Download gff for
BO10774.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6095514..6095633 | 1231..1350 | 98 | <- | Minus |
| arm_2R | 6095696..6095846 | 1080..1230 | 100 | <- | Minus |
| arm_2R | 6095906..6096149 | 836..1079 | 100 | <- | Minus |
| arm_2R | 6096211..6096357 | 689..835 | 100 | <- | Minus |
| arm_2R | 6096426..6096529 | 585..688 | 100 | <- | Minus |
| arm_2R | 6096606..6096769 | 421..584 | 100 | <- | Minus |
| arm_2R | 6096945..6097113 | 252..420 | 100 | <- | Minus |
| arm_2R | 6097385..6097617 | 17..251 | 99 | | Minus |
BO10774.pep Sequence
Translation from 16 to 1366
> BO10774.pep
MTAQIEIIPCKVCGDKSSGVHYGVITCEGCKGFFRRSQSSVVNYQCPRNK
QCVVDRVNRNRCQYCRLQKCLKLGMSRDAVKFGRMSKKQREKVEDEVRFH
RAQMRAQSDAAPDSSVYDTQTPSSSDQLHHNNYNSGGYSNNEVGYGSPYG
YSASVTPQQTMQYDISADYVDSTTYEPRSTIIDPEFISHADGDINDVLIK
TLAEAHANTNTKLEAVHDMFRKQPDVSRILYYKNLGQEELWLDCAEKLTQ
MIQNIIEFAKLIPGFMRLSQDDQILLLKTGSFELAIVRMSRLLDLSQNAV
LYGDVMLPQEAFYTSDSEEMRLVSRIFQTAKSIAELKLTETELALYQSLV
LLWPERNGVRGNTEIQRLFNLSMNAIRQELETNHAPLKGDVTVLDTLLNN
IPNFRDISILHMESLSKFKLQHPNVVFPALYKELFSIDSQQDLTASFLDH
BO10774.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:30:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hr46-PE | 874 | CG33183-PE | 431..874 | 1..444 | 2299 | 100 | Plus |
| Hr46-PC | 694 | CG33183-PC | 251..694 | 1..444 | 2299 | 100 | Plus |
| Hr46-PD | 456 | CG33183-PD | 15..456 | 3..444 | 2289 | 100 | Plus |
| Hr46-PF | 487 | CG33183-PF | 44..487 | 3..444 | 2276 | 99.5 | Plus |
| Hr46-PH | 529 | CG33183-PH | 44..487 | 3..444 | 2276 | 99.5 | Plus |
