Clone BO10779 Report

Search the DGRC for BO10779

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:107
Well:79
Vector:pDNR-Dual
Associated Gene/Transcriptdpr11-RB
Protein status:BO10779.pep: validated full length
Sequenced Size:1114

Clone Sequence Records

BO10779.3prime Sequence

745 bp (726 high quality bases) assembled on 2006-04-19

> BO10779.3prime
ATGGTCTAGAAAGCTTGCTGTGCGGTGGCCCACTCCGATGAGGATGACGC
TAAGCAGGAGCGCCAGGATGCTGAGGGCGTAGGCCCGGGTGGTGGCTGCC
GAGGATGTTACCGCCGAGGCCGACGATTCGCCATTTATTATGTTCAGCGT
TACGGTCGCACTGGGGCTATTCGACGGGCTACATGTGTAATTGCCTGTAT
CGCGCTTCTTGGCCGACTCGATGATTAATGAGCCAATCGTGCTCTGTCCT
TCGCCGGAGGCCTCCGGCAGGTTGGGATCCAGTTGCGTGCGGTGGCGCCG
GGAGTCGGCCGCCAGCTGCTCGGCGCCGTGGTACCACATGATGAACGTGG
GCGGCTCCAAGGCTCCGCGCACGATACAGCGGAGCACCACGTTGCTGCCC
GCCTTCACGTAGCGGTCCGGCTCTCCTAGGATCTCCGTGCGAGGAACCAC
AACTTGCAGCTGGACACGGGCGCTGACTTTGGGCTCCGTAGAGACCTGGC
ACTCGTAGGAGCCGGCGTCCCGGGCCTGGACGTACTTAATCTGCAGGGTC
CAGTACTTGTCCGGCTGCTTGATGGCCAGGAATCGCTGGTCGGCTATGAA
GACGGCCCTGTCAACGGTCAAGATGTGCCCATCTCGCAGACGAATCCAGG
ACACAGATTTGTTGCCCAGCTGTTTGACCCGACAGGGCAGATACGCGTGT
GTCCCGATCTGAGTGGTCACATTGGAAGTGGCGTAGCCATCCCGA

BO10779.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:10:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG33202-PB 1083 dpr11-RB 357..1080 742..19 3620 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:24:44
Subject Length Description Subject Range Query Range Score Percent Strand
dpr11-RC 4651 CG33202-RC 1426..2149 742..19 3620 100 Minus
dpr11-RB 3519 CG33202-RB 1426..2149 742..19 3620 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:24:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6532636..6532845 238..447 1050 100 Plus
3R 32079331 3R 6538307..6538470 447..610 820 100 Plus
3R 32079331 3R 6531671..6531784 19..132 570 100 Plus
3R 32079331 3R 6531945..6532052 131..238 540 100 Plus
3R 32079331 3R 6542570..6542642 607..679 365 100 Plus
3R 32079331 3R 6545673..6545738 677..742 330 100 Plus
Blast to na_te.dros performed on 2015-02-12 04:24:42 has no hits.

BO10779.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:49:01 Download gff for BO10779.3prime
Subject Subject Range Query Range Percent Splice Strand
dpr11-PB 355..1083 16..744 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:05:58 Download gff for BO10779.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33202-PB 355..1083 16..744 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:25:46 Download gff for BO10779.3prime
Subject Subject Range Query Range Percent Splice Strand
dpr11-RB 1424..2149 19..744 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:59:43 Download gff for BO10779.3prime
Subject Subject Range Query Range Percent Splice Strand
dpr11-RB 1424..2149 19..744 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:59:43 Download gff for BO10779.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 6531671..6531783 19..131 100 <- Plus
3R 6531946..6532051 132..237 100 <- Plus
3R 6532636..6532844 238..446 100 <- Plus
3R 6538307..6538467 447..607 100 <- Plus
3R 6542571..6542641 608..678 100 <- Plus
3R 6545675..6545740 679..744 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:25:46 Download gff for BO10779.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2357393..2357505 19..131 100 <- Plus
arm_3R 2357668..2357773 132..237 100 <- Plus
arm_3R 2358358..2358566 238..446 100 <- Plus
arm_3R 2364029..2364189 447..607 100 <- Plus
arm_3R 2368293..2368363 608..678 100 <- Plus
arm_3R 2371397..2371462 679..744 98   Plus

BO10779.5prime Sequence

829 bp (796 high quality bases) assembled on 2006-04-19

> BO10779.5prime
GAAGTTATCAGTCGACATGCGCTCCTGGAAAAATCGCAGTCGATCCGAAA
TGCAAACACTCGAAACGAGAGTGCGGCCCCTGCAGGGCGCTCAGCTAACT
CAGCTGCTCCTCGGTGGCATCCTCTGCCTCACAATCGCATCGCACACACA
GACGTCGGCGGAGGCGGCAGGCGGTCGGGTATCTGGACCCGGAGCAGGAA
CATCAGAAGGAGCAGGAACCTCATCGGCATCGGCAGCCTCCACGGCCATC
AGCTCCGATGAGAGCGGCGACCCATCATCGGCGACCGCGTTCTCCAGTTT
GGCTCAAGTGTCCTCGCTTCTGCCGGAGGCATCCGCTCTGTCGGCGACAT
CGGGACTCGTGGAGCCCTATCTGGATGGCTACGCCACTTCCAATGTGACC
ACTCAGATCGGGACACACGCGTATCTGCCCTGTCGGGTCAAACAGCTGGG
CAACAAATCTGTGTCCTGGATTCGTCTGCGAGATGGGCACATCTTGACCG
TTGACAGGGCCGTCTTCATAGCCGACCAGCGATTCCTGGCCATCAAGCAG
CCGGACAAGTACTGGACCCTGCAGATTAAGTACGTCCAGGCCCGGGACGC
CGGCTCCTACGAGTGCCAGGTCTCTACGGAGCCCAAAGTCAGCGCCCGTG
TCCAGCTGCAAGTTGTGGTTCCTCGCACGGAGATCCTAGGAGAGCCGGAC
CGCTACGTGAAGGCGGGCAGCAACGTGGTGCTCCGCTGTATCGTGCGCGG
AGCCTTGGAGCCGCCCACGTTCATCATGTGGTACCACGGCGCCGAGCAGC
TGGCGGCCGACTCCCGGCGCCACCGCACG

BO10779.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:10:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG33202-PB 1083 dpr11-RB 1..813 17..829 4065 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:28:36
Subject Length Description Subject Range Query Range Score Percent Strand
dpr11-RC 4651 CG33202-RC 1070..1882 17..829 4065 100 Plus
dpr11-RB 3519 CG33202-RB 1070..1882 17..829 4065 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:28:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6545673..6545974 438..137 1510 100 Minus
3R 32079331 3R 6538307..6538470 668..505 820 100 Minus
3R 32079331 3R 6532684..6532845 829..668 810 100 Minus
3R 32079331 3R 6566135..6566255 137..17 605 100 Minus
3R 32079331 3R 6542570..6542642 508..436 365 100 Minus
Blast to na_te.dros performed on 2015-02-11 18:28:34 has no hits.

BO10779.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:49:02 Download gff for BO10779.5prime
Subject Subject Range Query Range Percent Splice Strand
dpr11-PB 1..813 17..829 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:06:00 Download gff for BO10779.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33202-PB 1..813 17..829 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 16:34:47 Download gff for BO10779.5prime
Subject Subject Range Query Range Percent Splice Strand
dpr11-RB 1065..1882 10..829 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 20:06:58 Download gff for BO10779.5prime
Subject Subject Range Query Range Percent Splice Strand
dpr11-RB 1065..1882 10..829 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 20:06:58 Download gff for BO10779.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 6545675..6545973 138..436 100 <- Minus
3R 6566135..6566260 10..137 96   Minus
3R 6532684..6532844 669..829 100 <- Minus
3R 6538307..6538467 508..668 100 <- Minus
3R 6542571..6542641 437..507 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 16:34:47 Download gff for BO10779.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2358406..2358566 669..829 100 <- Minus
arm_3R 2364029..2364189 508..668 100 <- Minus
arm_3R 2368293..2368363 437..507 100 <- Minus
arm_3R 2371397..2371695 138..436 100 <- Minus
arm_3R 2391857..2391982 10..137 96   Minus

BO10779.complete Sequence

1114 bp (1114 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ631872

> BO10779.complete
GAAGTTATCAGTCGACATGCGCTCCTGGAAAAATCGCAGTCGATCCGAAA
TGCAAACACTCGAAACGAGAGTGCGGCCCCTGCAGGGCGCTCAGCTAACT
CAGCTGCTCCTCGGTGGCATCCTCTGCCTCACAATCGCATCGCACACACA
GACGTCGGCGGAGGCGGCAGGCGGTCGGGTATCTGGACCCGGAGCAGGAA
CATCAGAAGGAGCAGGAACCTCATCGGCATCGGCAGCCTCCACGGCCATC
AGCTCCGATGAGAGCGGCGACCCATCATCGGCGACCGCGTTCTCCAGTTT
GGCTCAAGTGTCCTCGCTTCTGCCGGAGGCATCCGCTCTGTCGGCGACAT
CGGGACTCGTGGAGCCCTATCTGGATGGCTACGCCACTTCCAATGTGACC
ACTCAGATCGGGACACACGCGTATCTGCCCTGTCGGGTCAAACAGCTGGG
CAACAAATCTGTGTCCTGGATTCGTCTGCGAGATGGGCACATCTTGACCG
TTGACAGGGCCGTCTTCATAGCCGACCAGCGATTCCTGGCCATCAAGCAG
CCGGACAAGTACTGGACCCTGCAGATTAAGTACGTCCAGGCCCGGGACGC
CGGCTCCTACGAGTGCCAGGTCTCTACGGAGCCCAAAGTCAGCGCCCGTG
TCCAGCTGCAAGTTGTGGTTCCTCGCACGGAGATCCTAGGAGAGCCGGAC
CGCTACGTGAAGGCGGGCAGCAACGTGGTGCTCCGCTGTATCGTGCGCGG
AGCCTTGGAGCCGCCCACGTTCATCATGTGGTACCACGGCGCCGAGCAGC
TGGCGGCCGACTCCCGGCGCCACCGCACGCAACTGGATCCCAACCTGCCG
GAGGCCTCCGGCGAAGGACAGAGCACGATTGGCTCATTAATCATCGAGTC
GGCCAAGAAGCGCGATACAGGCAATTACACATGTAGCCCGTCGAATAGCC
CCAGTGCGACCGTAACGCTGAACATAATAAATGGCGAATCGTCGGCCTCG
GCGGTAACATCCTCGGCAGCCACCACCCGGGCCTACGCCCTCAGCATCCT
GGCGCTCCTGCTTAGCGTCATCCTCATCGGAGTGGGCCACCGCACAGCAA
GCTTTCTAGACCAT

BO10779.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:38:02
Subject Length Description Subject Range Query Range Score Percent Strand
dpr11-RC 1083 CG33202-PC 1..1080 17..1096 5400 100 Plus
dpr11-RB 1083 CG33202-PB 1..1080 17..1096 5400 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:38:03
Subject Length Description Subject Range Query Range Score Percent Strand
dpr11-RC 4651 CG33202-RC 1070..2149 17..1096 5400 100 Plus
dpr11-RB 3519 CG33202-RB 1070..2149 17..1096 5400 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:38:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6545673..6545974 438..137 1510 100 Minus
3R 32079331 3R 6532636..6532845 877..668 1050 100 Minus
3R 32079331 3R 6538307..6538470 668..505 820 100 Minus
3R 32079331 3R 6566135..6566255 137..17 605 100 Minus
3R 32079331 3R 6531671..6531784 1096..983 570 100 Minus
3R 32079331 3R 6531945..6532052 984..877 540 100 Minus
3R 32079331 3R 6542570..6542642 508..436 365 100 Minus
Blast to na_te.dros performed on 2014-11-28 08:38:01 has no hits.

BO10779.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:49:01 Download gff for BO10779.complete
Subject Subject Range Query Range Percent Splice Strand
dpr11-RB 1..1083 17..1099 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:01:09 Download gff for BO10779.complete
Subject Subject Range Query Range Percent Splice Strand
dpr11-RB 1070..2149 17..1098 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:37 Download gff for BO10779.complete
Subject Subject Range Query Range Percent Splice Strand
dpr11-RB 1070..2149 17..1098 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:49:01 Download gff for BO10779.complete
Subject Subject Range Query Range Percent Splice Strand
dpr11-RB 1065..2149 10..1096 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:21:57 Download gff for BO10779.complete
Subject Subject Range Query Range Percent Splice Strand
dpr11-RB 1070..2149 17..1098 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:21:57 Download gff for BO10779.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6545675..6545973 138..436 100 <- Minus
3R 6531667..6531783 984..1098 98 <- Minus
3R 6531946..6532051 878..983 100 <- Minus
3R 6532636..6532844 669..877 100 <- Minus
3R 6538307..6538467 508..668 100 <- Minus
3R 6542571..6542641 437..507 100 <- Minus
3R 6566135..6566255 17..137 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:37 Download gff for BO10779.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2357389..2357505 984..1098 98 <- Minus
arm_3R 2357668..2357773 878..983 100 <- Minus
arm_3R 2358358..2358566 669..877 100 <- Minus
arm_3R 2364029..2364189 508..668 100 <- Minus
arm_3R 2368293..2368363 437..507 100 <- Minus
arm_3R 2371397..2371695 138..436 100 <- Minus
arm_3R 2391857..2391977 17..137 100   Minus

BO10779.pep Sequence

Translation from 16 to 1114

> BO10779.pep
MRSWKNRSRSEMQTLETRVRPLQGAQLTQLLLGGILCLTIASHTQTSAEA
AGGRVSGPGAGTSEGAGTSSASAASTAISSDESGDPSSATAFSSLAQVSS
LLPEASALSATSGLVEPYLDGYATSNVTTQIGTHAYLPCRVKQLGNKSVS
WIRLRDGHILTVDRAVFIADQRFLAIKQPDKYWTLQIKYVQARDAGSYEC
QVSTEPKVSARVQLQVVVPRTEILGEPDRYVKAGSNVVLRCIVRGALEPP
TFIMWYHGAEQLAADSRRHRTQLDPNLPEASGEGQSTIGSLIIESAKKRD
TGNYTCSPSNSPSATVTLNIINGESSASAVTSSAATTRAYALSILALLLS
VILIGVGHRTASFLDH

BO10779.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:31:10
Subject Length Description Subject Range Query Range Score Percent Strand
dpr11-PC 360 CG33202-PC 1..360 1..360 1802 100 Plus
dpr11-PB 360 CG33202-PB 1..360 1..360 1802 100 Plus
dpr17-PE 508 CG31361-PE 258..488 126..348 626 52.4 Plus
dpr17-PC 508 CG31361-PC 258..488 126..348 626 52.4 Plus
dpr17-PB 508 CG31361-PB 258..488 126..348 626 52.4 Plus