Clone Sequence Records
BO10779.3prime Sequence
745 bp (726 high quality bases) assembled on 2006-04-19
> BO10779.3prime
ATGGTCTAGAAAGCTTGCTGTGCGGTGGCCCACTCCGATGAGGATGACGC
TAAGCAGGAGCGCCAGGATGCTGAGGGCGTAGGCCCGGGTGGTGGCTGCC
GAGGATGTTACCGCCGAGGCCGACGATTCGCCATTTATTATGTTCAGCGT
TACGGTCGCACTGGGGCTATTCGACGGGCTACATGTGTAATTGCCTGTAT
CGCGCTTCTTGGCCGACTCGATGATTAATGAGCCAATCGTGCTCTGTCCT
TCGCCGGAGGCCTCCGGCAGGTTGGGATCCAGTTGCGTGCGGTGGCGCCG
GGAGTCGGCCGCCAGCTGCTCGGCGCCGTGGTACCACATGATGAACGTGG
GCGGCTCCAAGGCTCCGCGCACGATACAGCGGAGCACCACGTTGCTGCCC
GCCTTCACGTAGCGGTCCGGCTCTCCTAGGATCTCCGTGCGAGGAACCAC
AACTTGCAGCTGGACACGGGCGCTGACTTTGGGCTCCGTAGAGACCTGGC
ACTCGTAGGAGCCGGCGTCCCGGGCCTGGACGTACTTAATCTGCAGGGTC
CAGTACTTGTCCGGCTGCTTGATGGCCAGGAATCGCTGGTCGGCTATGAA
GACGGCCCTGTCAACGGTCAAGATGTGCCCATCTCGCAGACGAATCCAGG
ACACAGATTTGTTGCCCAGCTGTTTGACCCGACAGGGCAGATACGCGTGT
GTCCCGATCTGAGTGGTCACATTGGAAGTGGCGTAGCCATCCCGA
BO10779.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:10:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33202-PB | 1083 | dpr11-RB | 357..1080 | 742..19 | 3620 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:24:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dpr11-RC | 4651 | CG33202-RC | 1426..2149 | 742..19 | 3620 | 100 | Minus |
dpr11-RB | 3519 | CG33202-RB | 1426..2149 | 742..19 | 3620 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:24:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6532636..6532845 | 238..447 | 1050 | 100 | Plus |
3R | 32079331 | 3R | 6538307..6538470 | 447..610 | 820 | 100 | Plus |
3R | 32079331 | 3R | 6531671..6531784 | 19..132 | 570 | 100 | Plus |
3R | 32079331 | 3R | 6531945..6532052 | 131..238 | 540 | 100 | Plus |
3R | 32079331 | 3R | 6542570..6542642 | 607..679 | 365 | 100 | Plus |
3R | 32079331 | 3R | 6545673..6545738 | 677..742 | 330 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:24:42 has no hits.
BO10779.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:49:01 Download gff for
BO10779.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr11-PB | 355..1083 | 16..744 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:05:58 Download gff for
BO10779.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33202-PB | 355..1083 | 16..744 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:25:46 Download gff for
BO10779.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr11-RB | 1424..2149 | 19..744 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:59:43 Download gff for
BO10779.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr11-RB | 1424..2149 | 19..744 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:59:43 Download gff for
BO10779.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6531671..6531783 | 19..131 | 100 | <- | Plus |
3R | 6531946..6532051 | 132..237 | 100 | <- | Plus |
3R | 6532636..6532844 | 238..446 | 100 | <- | Plus |
3R | 6538307..6538467 | 447..607 | 100 | <- | Plus |
3R | 6542571..6542641 | 608..678 | 100 | <- | Plus |
3R | 6545675..6545740 | 679..744 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:25:46 Download gff for
BO10779.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2357393..2357505 | 19..131 | 100 | <- | Plus |
arm_3R | 2357668..2357773 | 132..237 | 100 | <- | Plus |
arm_3R | 2358358..2358566 | 238..446 | 100 | <- | Plus |
arm_3R | 2364029..2364189 | 447..607 | 100 | <- | Plus |
arm_3R | 2368293..2368363 | 608..678 | 100 | <- | Plus |
arm_3R | 2371397..2371462 | 679..744 | 98 | | Plus |
BO10779.5prime Sequence
829 bp (796 high quality bases) assembled on 2006-04-19
> BO10779.5prime
GAAGTTATCAGTCGACATGCGCTCCTGGAAAAATCGCAGTCGATCCGAAA
TGCAAACACTCGAAACGAGAGTGCGGCCCCTGCAGGGCGCTCAGCTAACT
CAGCTGCTCCTCGGTGGCATCCTCTGCCTCACAATCGCATCGCACACACA
GACGTCGGCGGAGGCGGCAGGCGGTCGGGTATCTGGACCCGGAGCAGGAA
CATCAGAAGGAGCAGGAACCTCATCGGCATCGGCAGCCTCCACGGCCATC
AGCTCCGATGAGAGCGGCGACCCATCATCGGCGACCGCGTTCTCCAGTTT
GGCTCAAGTGTCCTCGCTTCTGCCGGAGGCATCCGCTCTGTCGGCGACAT
CGGGACTCGTGGAGCCCTATCTGGATGGCTACGCCACTTCCAATGTGACC
ACTCAGATCGGGACACACGCGTATCTGCCCTGTCGGGTCAAACAGCTGGG
CAACAAATCTGTGTCCTGGATTCGTCTGCGAGATGGGCACATCTTGACCG
TTGACAGGGCCGTCTTCATAGCCGACCAGCGATTCCTGGCCATCAAGCAG
CCGGACAAGTACTGGACCCTGCAGATTAAGTACGTCCAGGCCCGGGACGC
CGGCTCCTACGAGTGCCAGGTCTCTACGGAGCCCAAAGTCAGCGCCCGTG
TCCAGCTGCAAGTTGTGGTTCCTCGCACGGAGATCCTAGGAGAGCCGGAC
CGCTACGTGAAGGCGGGCAGCAACGTGGTGCTCCGCTGTATCGTGCGCGG
AGCCTTGGAGCCGCCCACGTTCATCATGTGGTACCACGGCGCCGAGCAGC
TGGCGGCCGACTCCCGGCGCCACCGCACG
BO10779.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:10:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33202-PB | 1083 | dpr11-RB | 1..813 | 17..829 | 4065 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:28:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dpr11-RC | 4651 | CG33202-RC | 1070..1882 | 17..829 | 4065 | 100 | Plus |
dpr11-RB | 3519 | CG33202-RB | 1070..1882 | 17..829 | 4065 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:28:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6545673..6545974 | 438..137 | 1510 | 100 | Minus |
3R | 32079331 | 3R | 6538307..6538470 | 668..505 | 820 | 100 | Minus |
3R | 32079331 | 3R | 6532684..6532845 | 829..668 | 810 | 100 | Minus |
3R | 32079331 | 3R | 6566135..6566255 | 137..17 | 605 | 100 | Minus |
3R | 32079331 | 3R | 6542570..6542642 | 508..436 | 365 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 18:28:34 has no hits.
BO10779.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:49:02 Download gff for
BO10779.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr11-PB | 1..813 | 17..829 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:06:00 Download gff for
BO10779.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33202-PB | 1..813 | 17..829 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 16:34:47 Download gff for
BO10779.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr11-RB | 1065..1882 | 10..829 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 20:06:58 Download gff for
BO10779.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr11-RB | 1065..1882 | 10..829 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 20:06:58 Download gff for
BO10779.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6545675..6545973 | 138..436 | 100 | <- | Minus |
3R | 6566135..6566260 | 10..137 | 96 | | Minus |
3R | 6532684..6532844 | 669..829 | 100 | <- | Minus |
3R | 6538307..6538467 | 508..668 | 100 | <- | Minus |
3R | 6542571..6542641 | 437..507 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 16:34:47 Download gff for
BO10779.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2358406..2358566 | 669..829 | 100 | <- | Minus |
arm_3R | 2364029..2364189 | 508..668 | 100 | <- | Minus |
arm_3R | 2368293..2368363 | 437..507 | 100 | <- | Minus |
arm_3R | 2371397..2371695 | 138..436 | 100 | <- | Minus |
arm_3R | 2391857..2391982 | 10..137 | 96 | | Minus |
BO10779.complete Sequence
1114 bp (1114 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631872
> BO10779.complete
GAAGTTATCAGTCGACATGCGCTCCTGGAAAAATCGCAGTCGATCCGAAA
TGCAAACACTCGAAACGAGAGTGCGGCCCCTGCAGGGCGCTCAGCTAACT
CAGCTGCTCCTCGGTGGCATCCTCTGCCTCACAATCGCATCGCACACACA
GACGTCGGCGGAGGCGGCAGGCGGTCGGGTATCTGGACCCGGAGCAGGAA
CATCAGAAGGAGCAGGAACCTCATCGGCATCGGCAGCCTCCACGGCCATC
AGCTCCGATGAGAGCGGCGACCCATCATCGGCGACCGCGTTCTCCAGTTT
GGCTCAAGTGTCCTCGCTTCTGCCGGAGGCATCCGCTCTGTCGGCGACAT
CGGGACTCGTGGAGCCCTATCTGGATGGCTACGCCACTTCCAATGTGACC
ACTCAGATCGGGACACACGCGTATCTGCCCTGTCGGGTCAAACAGCTGGG
CAACAAATCTGTGTCCTGGATTCGTCTGCGAGATGGGCACATCTTGACCG
TTGACAGGGCCGTCTTCATAGCCGACCAGCGATTCCTGGCCATCAAGCAG
CCGGACAAGTACTGGACCCTGCAGATTAAGTACGTCCAGGCCCGGGACGC
CGGCTCCTACGAGTGCCAGGTCTCTACGGAGCCCAAAGTCAGCGCCCGTG
TCCAGCTGCAAGTTGTGGTTCCTCGCACGGAGATCCTAGGAGAGCCGGAC
CGCTACGTGAAGGCGGGCAGCAACGTGGTGCTCCGCTGTATCGTGCGCGG
AGCCTTGGAGCCGCCCACGTTCATCATGTGGTACCACGGCGCCGAGCAGC
TGGCGGCCGACTCCCGGCGCCACCGCACGCAACTGGATCCCAACCTGCCG
GAGGCCTCCGGCGAAGGACAGAGCACGATTGGCTCATTAATCATCGAGTC
GGCCAAGAAGCGCGATACAGGCAATTACACATGTAGCCCGTCGAATAGCC
CCAGTGCGACCGTAACGCTGAACATAATAAATGGCGAATCGTCGGCCTCG
GCGGTAACATCCTCGGCAGCCACCACCCGGGCCTACGCCCTCAGCATCCT
GGCGCTCCTGCTTAGCGTCATCCTCATCGGAGTGGGCCACCGCACAGCAA
GCTTTCTAGACCAT
BO10779.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:38:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dpr11-RC | 1083 | CG33202-PC | 1..1080 | 17..1096 | 5400 | 100 | Plus |
dpr11-RB | 1083 | CG33202-PB | 1..1080 | 17..1096 | 5400 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:38:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dpr11-RC | 4651 | CG33202-RC | 1070..2149 | 17..1096 | 5400 | 100 | Plus |
dpr11-RB | 3519 | CG33202-RB | 1070..2149 | 17..1096 | 5400 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:38:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6545673..6545974 | 438..137 | 1510 | 100 | Minus |
3R | 32079331 | 3R | 6532636..6532845 | 877..668 | 1050 | 100 | Minus |
3R | 32079331 | 3R | 6538307..6538470 | 668..505 | 820 | 100 | Minus |
3R | 32079331 | 3R | 6566135..6566255 | 137..17 | 605 | 100 | Minus |
3R | 32079331 | 3R | 6531671..6531784 | 1096..983 | 570 | 100 | Minus |
3R | 32079331 | 3R | 6531945..6532052 | 984..877 | 540 | 100 | Minus |
3R | 32079331 | 3R | 6542570..6542642 | 508..436 | 365 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:38:01 has no hits.
BO10779.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:49:01 Download gff for
BO10779.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr11-RB | 1..1083 | 17..1099 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:01:09 Download gff for
BO10779.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr11-RB | 1070..2149 | 17..1098 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:37 Download gff for
BO10779.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr11-RB | 1070..2149 | 17..1098 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:49:01 Download gff for
BO10779.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr11-RB | 1065..2149 | 10..1096 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:21:57 Download gff for
BO10779.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr11-RB | 1070..2149 | 17..1098 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:21:57 Download gff for
BO10779.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6545675..6545973 | 138..436 | 100 | <- | Minus |
3R | 6531667..6531783 | 984..1098 | 98 | <- | Minus |
3R | 6531946..6532051 | 878..983 | 100 | <- | Minus |
3R | 6532636..6532844 | 669..877 | 100 | <- | Minus |
3R | 6538307..6538467 | 508..668 | 100 | <- | Minus |
3R | 6542571..6542641 | 437..507 | 100 | <- | Minus |
3R | 6566135..6566255 | 17..137 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:37 Download gff for
BO10779.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2357389..2357505 | 984..1098 | 98 | <- | Minus |
arm_3R | 2357668..2357773 | 878..983 | 100 | <- | Minus |
arm_3R | 2358358..2358566 | 669..877 | 100 | <- | Minus |
arm_3R | 2364029..2364189 | 508..668 | 100 | <- | Minus |
arm_3R | 2368293..2368363 | 437..507 | 100 | <- | Minus |
arm_3R | 2371397..2371695 | 138..436 | 100 | <- | Minus |
arm_3R | 2391857..2391977 | 17..137 | 100 | | Minus |
BO10779.pep Sequence
Translation from 16 to 1114
> BO10779.pep
MRSWKNRSRSEMQTLETRVRPLQGAQLTQLLLGGILCLTIASHTQTSAEA
AGGRVSGPGAGTSEGAGTSSASAASTAISSDESGDPSSATAFSSLAQVSS
LLPEASALSATSGLVEPYLDGYATSNVTTQIGTHAYLPCRVKQLGNKSVS
WIRLRDGHILTVDRAVFIADQRFLAIKQPDKYWTLQIKYVQARDAGSYEC
QVSTEPKVSARVQLQVVVPRTEILGEPDRYVKAGSNVVLRCIVRGALEPP
TFIMWYHGAEQLAADSRRHRTQLDPNLPEASGEGQSTIGSLIIESAKKRD
TGNYTCSPSNSPSATVTLNIINGESSASAVTSSAATTRAYALSILALLLS
VILIGVGHRTASFLDH
BO10779.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:31:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dpr11-PC | 360 | CG33202-PC | 1..360 | 1..360 | 1802 | 100 | Plus |
dpr11-PB | 360 | CG33202-PB | 1..360 | 1..360 | 1802 | 100 | Plus |
dpr17-PE | 508 | CG31361-PE | 258..488 | 126..348 | 626 | 52.4 | Plus |
dpr17-PC | 508 | CG31361-PC | 258..488 | 126..348 | 626 | 52.4 | Plus |
dpr17-PB | 508 | CG31361-PB | 258..488 | 126..348 | 626 | 52.4 | Plus |