Clone BO10785 Report

Search the DGRC for BO10785

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:107
Well:85
Vector:pDNR-Dual
Associated Gene/TranscriptCG11448-RA
Protein status:BO10785.pep: validated full length
Sequenced Size:1363

Clone Sequence Records

BO10785.3prime Sequence

858 bp (813 high quality bases) assembled on 2006-04-19

> BO10785.3prime
ATGGTCTAGAAAGCTTGCCTTCGCCGCTGCGGAGGCGGAAACGGAACCGG
GCGTGGCCGACAGCGCCATCTTGGAGAGCGTGGCCAAGGAACGTTTCGGG
AACGTGTTGCTGCCGTCCGACGGGTCCGAGAACAGCTTCCGGAAGAATTT
GCGTATTCCCGACTCGGAGCTCTTCTTCCAGGGCGCATCGTCCGGCTCGT
AGGGCAAAGGGCCCTGCACGGGCGCATCGTGTCCAGGTGGCGTTTCTCCG
GCCGCTGGTGGCTCCAGCTCGTTCGCCTCGGCAGCCGCCTCCTCCTCGTC
GTCGTCATCATCGTTGTCCGCCACGTGACCATCGTCGTCCTCATCGCTAT
CGTCGGAGCTGGAGAAGTGACGCTGCCGCTTGCCCTTCGCCTGGCTTGGT
GGCTTCAGCTCCGCCAGCTGCTCGTTGAGGGTGTCGATGGTGGTCAGCAG
CTCATCGCGCTCGCTAATCAACTCTTTCAGCTCGCGCGTGGTGTACCGCG
GCCGGTTGGGATCGTTCTGGCCATCGTCGTACGAGGCCACCAAATCCTCA
TTCTCCTTTTCGGCCAGGCCCAATCGCTTGCGCAGTTGGTTGATCTCCCG
GCTCTGGTCCTGCAGCTGGGCAAGAAAGTCGGCGCGCTCCTCGCACAGCG
TCTTCACTTGGGCCTGCATCAGCTTGTGGCGGCGCCGGGTATCTCGCTCT
GATGCCTTCAGACGCTCCGCCTGGATATTGAGGTGCTCCAGCTCGCTGTA
CTTGTCCTGCAGCTCACGCTCGCGGTGCTTCAACTCGTCGCGCTGCTTGT
ATATCTGCTCCTTCAGCCGTTGCAGCACTTGAGTATCCGAAAGAGCGCTG
TGCAGCTC

BO10785.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:10:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG11448-PA 1332 CG11448-RA 490..1329 858..19 4200 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:53:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG11448-RA 3784 CG11448-RA 980..1819 858..19 4200 100 Minus
CG11448-RC 3603 CG11448-RC 980..1818 858..20 4195 100 Minus
CG11448-RB 3799 CG11448-RB 980..1834 858..19 4040 98.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:52:57
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1394224..1394715 732..241 2460 100 Minus
X 23542271 X 1395246..1395372 145..19 635 100 Minus
X 23542271 X 1394033..1394158 858..733 630 100 Minus
X 23542271 X 1395098..1395193 241..146 480 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:53:00 has no hits.

BO10785.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:49:14 Download gff for BO10785.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11448-PA 490..1332 15..858 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:06:16 Download gff for BO10785.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11448-PA 490..1332 15..858 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:53:43 Download gff for BO10785.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11448-RA 980..1824 13..858 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:56:41 Download gff for BO10785.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11448-RA 980..1824 13..858 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:56:41 Download gff for BO10785.3prime
Subject Subject Range Query Range Percent Splice Strand
X 1394033..1394158 733..858 100 -> Minus
X 1394224..1394714 242..732 100 -> Minus
X 1395098..1395193 146..241 100 -> Minus
X 1395246..1395377 13..145 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:53:43 Download gff for BO10785.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 1288066..1288191 733..858 100 -> Minus
arm_X 1288257..1288747 242..732 100 -> Minus
arm_X 1289131..1289226 146..241 100 -> Minus
arm_X 1289279..1289410 13..145 98   Minus

BO10785.5prime Sequence

803 bp (800 high quality bases) assembled on 2006-04-19

> BO10785.5prime
GAAGTTATCAGTCGACATGCCCGGCTTTCACCTCAATGAGATGGGTGAAA
TGGTCCTGGACGCCATCGACGACATCGGCGTGGTCGATGTGTACGACTTG
GCCTCCGACATTGGCAAGGAGTACGAGCGGATCATGGACCGCTTCGGCAC
GGACGCCGTCAGCGGGCTGATGCCCAAGATCATCAACACCCTGGAGCTGT
TGGAGGCGCTGGCCACGAAGAACGAGCGCGAGAACGCCACCATCCAGGAG
CTGCGCGATAAGGTGGCCCAGCTGGAGAGCGAGAAGCTGGAGAAGGCCGA
GTTCCGGCGGCGGTTCGACAAGGAGCTGGAGCTGATCGAAGAGCAGTGGC
GCAGCGAGACCAACGAGCTGGTCGATCTCGTCTCCTCGCTGCAAGACGAG
AACAAGCGGCTGGTAAAGCAGACTCAGGATCTGCAGTCATCGTCCGCCCA
GAGCTCCGGCCTGGGGGCCAGTCTCACCGAGAGCATTATCAGCATGACCA
ACCACGAGCTGCACAGCGCTCTTTCGGATACTCAAGTGCTGCAACGGCTG
AAGGAGCAGATATACAAGCAGCGCGACGAGTTGAAGCACCGCGAGCGTGA
GCTGCAGGACAAGTACAGCGAGCTGGAGCACCTCAATATCCAGGCGGAGC
GTCTGAAGGCATCAGAGCGAGATACCCGGCGCCGCCACAAGCTGATGCAG
GCCCAAGTGAAGACGCTGTGCGAGGAGCGCGCCGACTTTCTTGCCCAGCT
GCAGGACCAGAGCCGGGAGATCAACCAACTGCGCAAGCGATTGGGCCTGG
CCG

BO10785.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:10:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG11448-PA 1332 CG11448-RA 1..787 17..803 3935 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:43:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG11448-RC 3603 CG11448-RC 491..1277 17..803 3935 100 Plus
CG11448-RB 3799 CG11448-RB 491..1277 17..803 3935 100 Plus
CG11448-RA 3784 CG11448-RA 491..1277 17..803 3935 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:43:45
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1393544..1394158 17..631 3075 100 Plus
X 23542271 X 1394224..1394395 632..803 860 100 Plus
Blast to na_te.dros performed 2015-02-10 23:43:46
Subject Length Description Subject Range Query Range Score Percent Strand
Rt1b 5171 Rt1b RT1B 5150bp 3133..3169 326..361 110 81.1 Plus

BO10785.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:49:15 Download gff for BO10785.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11448-PA 1..787 17..803 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:06:17 Download gff for BO10785.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11448-PA 1..787 17..803 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:26:25 Download gff for BO10785.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11448-RA 491..1277 17..803 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:22:10 Download gff for BO10785.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11448-RA 491..1277 17..803 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:22:10 Download gff for BO10785.5prime
Subject Subject Range Query Range Percent Splice Strand
X 1393544..1394158 17..631 100 -> Plus
X 1394224..1394395 632..803 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:26:25 Download gff for BO10785.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 1287577..1288191 17..631 100 -> Plus
arm_X 1288257..1288428 632..803 100   Plus

BO10785.complete Sequence

1363 bp (1363 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ631874

> BO10785.complete
GAAGTTATCAGTCGACATGCCCGGCTTTCACCTCAATGAGATGGGTGAAA
TGGTCCTGGACGCCATCGACGACATCGGCGTGGTCGATGTGTACGACTTG
GCCTCCGACATTGGCAAGGAGTACGAGCGGATCATGGACCGCTTCGGCAC
GGACGCCGTCAGCGGGCTGATGCCCAAGATCATCAACACCCTGGAGCTGT
TGGAGGCGCTGGCCACGAAGAACGAGCGCGAGAACGCCACCATCCAGGAG
CTGCGCGATAAGGTGGCCCAGCTGGAGAGCGAGAAGCTGGAGAAGGCCGA
GTTCCGGCGGCGGTTCGACAAGGAGCTGGAGCTGATCGAAGAGCAGTGGC
GCAGCGAGACCAACGAGCTGGTCGATCTCGTCTCCTCGCTGCAAGACGAG
AACAAGCGGCTGGTAAAGCAGACTCAGGATCTGCAGTCATCGTCCGCCCA
GAGCTCCGGCCTGGGGGCCAGTCTCACCGAGAGCATTATCAGCATGACCA
ACCACGAGCTGCACAGCGCTCTTTCGGATACTCAAGTGCTGCAACGGCTG
AAGGAGCAGATATACAAGCAGCGCGACGAGTTGAAGCACCGCGAGCGTGA
GCTGCAGGACAAGTACAGCGAGCTGGAGCACCTCAATATCCAGGCGGAGC
GTCTGAAGGCATCAGAGCGAGATACCCGGCGCCGCCACAAGCTGATGCAG
GCCCAAGTGAAGACGCTGTGCGAGGAGCGCGCCGACTTTCTTGCCCAGCT
GCAGGACCAGAGCCGGGAGATCAACCAACTGCGCAAGCGATTGGGCCTGG
CCGAAAAGGAGAATGAGGATTTGGTGGCCTCGTACGACGATGGCCAGAAC
GATCCCAACCGGCCGCGGTACACCACGCGCGAGCTGAAAGAGTTGATTAG
CGAGCGCGATGAGCTGCTGACCACCATCGACACCCTCAACGAGCAGCTGG
CGGAGCTGAAGCCACCAAGCCAGGCGAAGGGCAAGCGGCAGCGTCACTTC
TCCAGCTCCGACGATAGCGATGAGGACGACGATGGTCACGTGGCGGACAA
CGATGATGACGACGACGAGGAGGAGGCGGCTGCCGAGGCGAACGAGCTGG
AGCCACCAGCGGCCGGAGAAACGCCACCTGGACACGATGCGCCCGTGCAG
GGCCCTTTGCCCTACGAGCCGGACGATGCGCCCTGGAAGAAGAGCTCCGA
GTCGGGAATACGCAAATTCTTCCGGAAGCTGTTCTCGGACCCGTCGGACG
GCAGCAACACGTTCCCGAAACGTTCCTTGGCCACGCTCTCCAAGATGGCG
CTGTCGGCCACGCCCGGTTCCGTTTCCGCCTCCGCAGCGGCGAAGGCAAG
CTTTCTAGACCAT

BO10785.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:45:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG11448-RA 1332 CG11448-PA 1..1329 17..1345 6645 100 Plus
CG11448-RC 1461 CG11448-PC 1..1328 17..1344 6640 100 Plus
CG11448-RB 1347 CG11448-PB 1..1344 17..1345 6460 98.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:45:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG11448-RA 3784 CG11448-RA 491..1819 17..1345 6645 100 Plus
CG11448-RC 3603 CG11448-RC 491..1818 17..1344 6640 100 Plus
CG11448-RB 3799 CG11448-RB 491..1834 17..1345 6460 98.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:45:36
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1393544..1394158 17..631 3075 100 Plus
X 23542271 X 1394224..1394715 632..1123 2460 100 Plus
X 23542271 X 1395246..1395372 1219..1345 635 100 Plus
X 23542271 X 1395098..1395193 1123..1218 480 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:45:37 has no hits.

BO10785.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:48:50 Download gff for BO10785.complete
Subject Subject Range Query Range Percent Splice Strand
CG11448-RA 1..1332 17..1349 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:20:09 Download gff for BO10785.complete
Subject Subject Range Query Range Percent Splice Strand
CG11448-RA 480..1813 17..1351 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:58:59 Download gff for BO10785.complete
Subject Subject Range Query Range Percent Splice Strand
CG11448-RA 491..1819 17..1347 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:48:50 Download gff for BO10785.complete
Subject Subject Range Query Range Percent Splice Strand
CG11448-RA 480..1813 17..1351 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:09 Download gff for BO10785.complete
Subject Subject Range Query Range Percent Splice Strand
CG11448-RA 491..1819 17..1347 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:09 Download gff for BO10785.complete
Subject Subject Range Query Range Percent Splice Strand
X 1393544..1394158 17..631 100 -> Plus
X 1394224..1394714 632..1122 100 -> Plus
X 1395098..1395193 1123..1218 100 -> Plus
X 1395246..1395372 1219..1347 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:58:59 Download gff for BO10785.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 1289131..1289226 1123..1218 100 -> Plus
arm_X 1289279..1289405 1219..1347 98   Plus
arm_X 1288257..1288747 632..1122 100 -> Plus
arm_X 1287577..1288191 17..631 100 -> Plus

BO10785.pep Sequence

Translation from 16 to 1363

> BO10785.pep
MPGFHLNEMGEMVLDAIDDIGVVDVYDLASDIGKEYERIMDRFGTDAVSG
LMPKIINTLELLEALATKNERENATIQELRDKVAQLESEKLEKAEFRRRF
DKELELIEEQWRSETNELVDLVSSLQDENKRLVKQTQDLQSSSAQSSGLG
ASLTESIISMTNHELHSALSDTQVLQRLKEQIYKQRDELKHRERELQDKY
SELEHLNIQAERLKASERDTRRRHKLMQAQVKTLCEERADFLAQLQDQSR
EINQLRKRLGLAEKENEDLVASYDDGQNDPNRPRYTTRELKELISERDEL
LTTIDTLNEQLAELKPPSQAKGKRQRHFSSSDDSDEDDDGHVADNDDDDD
EEEAAAEANELEPPAAGETPPGHDAPVQGPLPYEPDDAPWKKSSESGIRK
FFRKLFSDPSDGSNTFPKRSLATLSKMALSATPGSVSASAAAKASFLDH

BO10785.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:31:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG11448-PA 443 CG11448-PA 1..443 1..443 2239 100 Plus
CG11448-PC 486 CG11448-PC 1..442 1..442 2234 100 Plus
CG11448-PB 448 CG11448-PB 1..448 1..443 2223 98.9 Plus