Clone Sequence Records
BO10785.3prime Sequence
858 bp (813 high quality bases) assembled on 2006-04-19
> BO10785.3prime
ATGGTCTAGAAAGCTTGCCTTCGCCGCTGCGGAGGCGGAAACGGAACCGG
GCGTGGCCGACAGCGCCATCTTGGAGAGCGTGGCCAAGGAACGTTTCGGG
AACGTGTTGCTGCCGTCCGACGGGTCCGAGAACAGCTTCCGGAAGAATTT
GCGTATTCCCGACTCGGAGCTCTTCTTCCAGGGCGCATCGTCCGGCTCGT
AGGGCAAAGGGCCCTGCACGGGCGCATCGTGTCCAGGTGGCGTTTCTCCG
GCCGCTGGTGGCTCCAGCTCGTTCGCCTCGGCAGCCGCCTCCTCCTCGTC
GTCGTCATCATCGTTGTCCGCCACGTGACCATCGTCGTCCTCATCGCTAT
CGTCGGAGCTGGAGAAGTGACGCTGCCGCTTGCCCTTCGCCTGGCTTGGT
GGCTTCAGCTCCGCCAGCTGCTCGTTGAGGGTGTCGATGGTGGTCAGCAG
CTCATCGCGCTCGCTAATCAACTCTTTCAGCTCGCGCGTGGTGTACCGCG
GCCGGTTGGGATCGTTCTGGCCATCGTCGTACGAGGCCACCAAATCCTCA
TTCTCCTTTTCGGCCAGGCCCAATCGCTTGCGCAGTTGGTTGATCTCCCG
GCTCTGGTCCTGCAGCTGGGCAAGAAAGTCGGCGCGCTCCTCGCACAGCG
TCTTCACTTGGGCCTGCATCAGCTTGTGGCGGCGCCGGGTATCTCGCTCT
GATGCCTTCAGACGCTCCGCCTGGATATTGAGGTGCTCCAGCTCGCTGTA
CTTGTCCTGCAGCTCACGCTCGCGGTGCTTCAACTCGTCGCGCTGCTTGT
ATATCTGCTCCTTCAGCCGTTGCAGCACTTGAGTATCCGAAAGAGCGCTG
TGCAGCTC
BO10785.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:10:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11448-PA | 1332 | CG11448-RA | 490..1329 | 858..19 | 4200 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:53:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11448-RA | 3784 | CG11448-RA | 980..1819 | 858..19 | 4200 | 100 | Minus |
CG11448-RC | 3603 | CG11448-RC | 980..1818 | 858..20 | 4195 | 100 | Minus |
CG11448-RB | 3799 | CG11448-RB | 980..1834 | 858..19 | 4040 | 98.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:52:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1394224..1394715 | 732..241 | 2460 | 100 | Minus |
X | 23542271 | X | 1395246..1395372 | 145..19 | 635 | 100 | Minus |
X | 23542271 | X | 1394033..1394158 | 858..733 | 630 | 100 | Minus |
X | 23542271 | X | 1395098..1395193 | 241..146 | 480 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:53:00 has no hits.
BO10785.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:49:14 Download gff for
BO10785.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11448-PA | 490..1332 | 15..858 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:06:16 Download gff for
BO10785.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11448-PA | 490..1332 | 15..858 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:53:43 Download gff for
BO10785.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11448-RA | 980..1824 | 13..858 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:56:41 Download gff for
BO10785.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11448-RA | 980..1824 | 13..858 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:56:41 Download gff for
BO10785.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1394033..1394158 | 733..858 | 100 | -> | Minus |
X | 1394224..1394714 | 242..732 | 100 | -> | Minus |
X | 1395098..1395193 | 146..241 | 100 | -> | Minus |
X | 1395246..1395377 | 13..145 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:53:43 Download gff for
BO10785.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1288066..1288191 | 733..858 | 100 | -> | Minus |
arm_X | 1288257..1288747 | 242..732 | 100 | -> | Minus |
arm_X | 1289131..1289226 | 146..241 | 100 | -> | Minus |
arm_X | 1289279..1289410 | 13..145 | 98 | | Minus |
BO10785.5prime Sequence
803 bp (800 high quality bases) assembled on 2006-04-19
> BO10785.5prime
GAAGTTATCAGTCGACATGCCCGGCTTTCACCTCAATGAGATGGGTGAAA
TGGTCCTGGACGCCATCGACGACATCGGCGTGGTCGATGTGTACGACTTG
GCCTCCGACATTGGCAAGGAGTACGAGCGGATCATGGACCGCTTCGGCAC
GGACGCCGTCAGCGGGCTGATGCCCAAGATCATCAACACCCTGGAGCTGT
TGGAGGCGCTGGCCACGAAGAACGAGCGCGAGAACGCCACCATCCAGGAG
CTGCGCGATAAGGTGGCCCAGCTGGAGAGCGAGAAGCTGGAGAAGGCCGA
GTTCCGGCGGCGGTTCGACAAGGAGCTGGAGCTGATCGAAGAGCAGTGGC
GCAGCGAGACCAACGAGCTGGTCGATCTCGTCTCCTCGCTGCAAGACGAG
AACAAGCGGCTGGTAAAGCAGACTCAGGATCTGCAGTCATCGTCCGCCCA
GAGCTCCGGCCTGGGGGCCAGTCTCACCGAGAGCATTATCAGCATGACCA
ACCACGAGCTGCACAGCGCTCTTTCGGATACTCAAGTGCTGCAACGGCTG
AAGGAGCAGATATACAAGCAGCGCGACGAGTTGAAGCACCGCGAGCGTGA
GCTGCAGGACAAGTACAGCGAGCTGGAGCACCTCAATATCCAGGCGGAGC
GTCTGAAGGCATCAGAGCGAGATACCCGGCGCCGCCACAAGCTGATGCAG
GCCCAAGTGAAGACGCTGTGCGAGGAGCGCGCCGACTTTCTTGCCCAGCT
GCAGGACCAGAGCCGGGAGATCAACCAACTGCGCAAGCGATTGGGCCTGG
CCG
BO10785.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:10:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11448-PA | 1332 | CG11448-RA | 1..787 | 17..803 | 3935 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:43:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11448-RC | 3603 | CG11448-RC | 491..1277 | 17..803 | 3935 | 100 | Plus |
CG11448-RB | 3799 | CG11448-RB | 491..1277 | 17..803 | 3935 | 100 | Plus |
CG11448-RA | 3784 | CG11448-RA | 491..1277 | 17..803 | 3935 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:43:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1393544..1394158 | 17..631 | 3075 | 100 | Plus |
X | 23542271 | X | 1394224..1394395 | 632..803 | 860 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 23:43:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rt1b | 5171 | Rt1b RT1B 5150bp | 3133..3169 | 326..361 | 110 | 81.1 | Plus |
BO10785.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:49:15 Download gff for
BO10785.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11448-PA | 1..787 | 17..803 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:06:17 Download gff for
BO10785.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11448-PA | 1..787 | 17..803 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:26:25 Download gff for
BO10785.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11448-RA | 491..1277 | 17..803 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:22:10 Download gff for
BO10785.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11448-RA | 491..1277 | 17..803 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:22:10 Download gff for
BO10785.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1393544..1394158 | 17..631 | 100 | -> | Plus |
X | 1394224..1394395 | 632..803 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:26:25 Download gff for
BO10785.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1287577..1288191 | 17..631 | 100 | -> | Plus |
arm_X | 1288257..1288428 | 632..803 | 100 | | Plus |
BO10785.complete Sequence
1363 bp (1363 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631874
> BO10785.complete
GAAGTTATCAGTCGACATGCCCGGCTTTCACCTCAATGAGATGGGTGAAA
TGGTCCTGGACGCCATCGACGACATCGGCGTGGTCGATGTGTACGACTTG
GCCTCCGACATTGGCAAGGAGTACGAGCGGATCATGGACCGCTTCGGCAC
GGACGCCGTCAGCGGGCTGATGCCCAAGATCATCAACACCCTGGAGCTGT
TGGAGGCGCTGGCCACGAAGAACGAGCGCGAGAACGCCACCATCCAGGAG
CTGCGCGATAAGGTGGCCCAGCTGGAGAGCGAGAAGCTGGAGAAGGCCGA
GTTCCGGCGGCGGTTCGACAAGGAGCTGGAGCTGATCGAAGAGCAGTGGC
GCAGCGAGACCAACGAGCTGGTCGATCTCGTCTCCTCGCTGCAAGACGAG
AACAAGCGGCTGGTAAAGCAGACTCAGGATCTGCAGTCATCGTCCGCCCA
GAGCTCCGGCCTGGGGGCCAGTCTCACCGAGAGCATTATCAGCATGACCA
ACCACGAGCTGCACAGCGCTCTTTCGGATACTCAAGTGCTGCAACGGCTG
AAGGAGCAGATATACAAGCAGCGCGACGAGTTGAAGCACCGCGAGCGTGA
GCTGCAGGACAAGTACAGCGAGCTGGAGCACCTCAATATCCAGGCGGAGC
GTCTGAAGGCATCAGAGCGAGATACCCGGCGCCGCCACAAGCTGATGCAG
GCCCAAGTGAAGACGCTGTGCGAGGAGCGCGCCGACTTTCTTGCCCAGCT
GCAGGACCAGAGCCGGGAGATCAACCAACTGCGCAAGCGATTGGGCCTGG
CCGAAAAGGAGAATGAGGATTTGGTGGCCTCGTACGACGATGGCCAGAAC
GATCCCAACCGGCCGCGGTACACCACGCGCGAGCTGAAAGAGTTGATTAG
CGAGCGCGATGAGCTGCTGACCACCATCGACACCCTCAACGAGCAGCTGG
CGGAGCTGAAGCCACCAAGCCAGGCGAAGGGCAAGCGGCAGCGTCACTTC
TCCAGCTCCGACGATAGCGATGAGGACGACGATGGTCACGTGGCGGACAA
CGATGATGACGACGACGAGGAGGAGGCGGCTGCCGAGGCGAACGAGCTGG
AGCCACCAGCGGCCGGAGAAACGCCACCTGGACACGATGCGCCCGTGCAG
GGCCCTTTGCCCTACGAGCCGGACGATGCGCCCTGGAAGAAGAGCTCCGA
GTCGGGAATACGCAAATTCTTCCGGAAGCTGTTCTCGGACCCGTCGGACG
GCAGCAACACGTTCCCGAAACGTTCCTTGGCCACGCTCTCCAAGATGGCG
CTGTCGGCCACGCCCGGTTCCGTTTCCGCCTCCGCAGCGGCGAAGGCAAG
CTTTCTAGACCAT
BO10785.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:45:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11448-RA | 1332 | CG11448-PA | 1..1329 | 17..1345 | 6645 | 100 | Plus |
CG11448-RC | 1461 | CG11448-PC | 1..1328 | 17..1344 | 6640 | 100 | Plus |
CG11448-RB | 1347 | CG11448-PB | 1..1344 | 17..1345 | 6460 | 98.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:45:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11448-RA | 3784 | CG11448-RA | 491..1819 | 17..1345 | 6645 | 100 | Plus |
CG11448-RC | 3603 | CG11448-RC | 491..1818 | 17..1344 | 6640 | 100 | Plus |
CG11448-RB | 3799 | CG11448-RB | 491..1834 | 17..1345 | 6460 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:45:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1393544..1394158 | 17..631 | 3075 | 100 | Plus |
X | 23542271 | X | 1394224..1394715 | 632..1123 | 2460 | 100 | Plus |
X | 23542271 | X | 1395246..1395372 | 1219..1345 | 635 | 100 | Plus |
X | 23542271 | X | 1395098..1395193 | 1123..1218 | 480 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:45:37 has no hits.
BO10785.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:48:50 Download gff for
BO10785.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11448-RA | 1..1332 | 17..1349 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:20:09 Download gff for
BO10785.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11448-RA | 480..1813 | 17..1351 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:58:59 Download gff for
BO10785.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11448-RA | 491..1819 | 17..1347 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:48:50 Download gff for
BO10785.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11448-RA | 480..1813 | 17..1351 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:09 Download gff for
BO10785.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11448-RA | 491..1819 | 17..1347 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:09 Download gff for
BO10785.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1393544..1394158 | 17..631 | 100 | -> | Plus |
X | 1394224..1394714 | 632..1122 | 100 | -> | Plus |
X | 1395098..1395193 | 1123..1218 | 100 | -> | Plus |
X | 1395246..1395372 | 1219..1347 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:58:59 Download gff for
BO10785.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1289131..1289226 | 1123..1218 | 100 | -> | Plus |
arm_X | 1289279..1289405 | 1219..1347 | 98 | | Plus |
arm_X | 1288257..1288747 | 632..1122 | 100 | -> | Plus |
arm_X | 1287577..1288191 | 17..631 | 100 | -> | Plus |
BO10785.pep Sequence
Translation from 16 to 1363
> BO10785.pep
MPGFHLNEMGEMVLDAIDDIGVVDVYDLASDIGKEYERIMDRFGTDAVSG
LMPKIINTLELLEALATKNERENATIQELRDKVAQLESEKLEKAEFRRRF
DKELELIEEQWRSETNELVDLVSSLQDENKRLVKQTQDLQSSSAQSSGLG
ASLTESIISMTNHELHSALSDTQVLQRLKEQIYKQRDELKHRERELQDKY
SELEHLNIQAERLKASERDTRRRHKLMQAQVKTLCEERADFLAQLQDQSR
EINQLRKRLGLAEKENEDLVASYDDGQNDPNRPRYTTRELKELISERDEL
LTTIDTLNEQLAELKPPSQAKGKRQRHFSSSDDSDEDDDGHVADNDDDDD
EEEAAAEANELEPPAAGETPPGHDAPVQGPLPYEPDDAPWKKSSESGIRK
FFRKLFSDPSDGSNTFPKRSLATLSKMALSATPGSVSASAAAKASFLDH
BO10785.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:31:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11448-PA | 443 | CG11448-PA | 1..443 | 1..443 | 2239 | 100 | Plus |
CG11448-PC | 486 | CG11448-PC | 1..442 | 1..442 | 2234 | 100 | Plus |
CG11448-PB | 448 | CG11448-PB | 1..448 | 1..443 | 2223 | 98.9 | Plus |