Clone Sequence Records
BO10796.3prime Sequence
876 bp (802 high quality bases) assembled on 2006-04-19
> BO10796.3prime
ATGGTCTAGAAAGCTTGCCCAGGTTAATCGAGTGGCATGATCCGTCTTGC
GCTTCGACATCTTAATGTACCCCAGAAACTGCAACTCGGCTACGGCACGC
GTGAATCGGGCCTGGATCTGGGGATCGATTTGTTCCTGGGCCACTTCCTC
GTGGTCGCTGTCGCTCACAACAGATCGAAAGGCCTGCAGCCAGTCGAAAA
GGTTGATCATGCGACCGCACTCCAGGTGCAGCTTGTAAACCACGGAGAGA
TCGGGCAGTGTGCCAACCAGCAGTGATTGATCTTGTAGCTCGCAGCACTT
GCACTGCATGTAAAAATGTGGATTATTCAGGGCAGTGTGCAGTGCAGCCC
GCGGAGCACCAATTATGTTTCGCCGCACGGTAGCAATGTCGCTGAACACA
AAAAGTTCGTGAATAGGTGGTGCATCCTGCAGCGCACGGAGATGATCCTG
TACAATCTGCGTTTCGATAAGCTGCAGAGTCTTTTGTAGAGCTCGTCCGA
ATTGGGTGGTGGGCGTGTTCAGCTGATGCCGCATCTTGTCCTCCTTGCTA
CGCTGTAGGAGCTGATCTTTCAATTCTTGACGCGAGGCCACCGGAGTCAA
ATGGTCAGTCGCCTGGCGGGTTTCATTGGGCGATGTCGTTGTAATTGTCG
CCATGGTGGCCTTGACCACTTCGTCCACTGCAAGGCGTATAGCTTCTAAC
TTAGGTCTCAGCACAGCAGTGCAGGCCTCGCCCAATTCCAGCGGAGCAAT
TTCTTCAACCAGGAACTGTTCGGTTCTTTCCAGGGCTCGATTCACTTTAG
CAACAAATTCGTCCTTGGACAGAAAGCTTAGCATCTGCAGGCACTCCTTG
TACTCCGGCGTCGAAATGATCGCACG
BO10796.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:10:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4088-PA | 2166 | lat-RA | 1306..2163 | 876..19 | 4290 | 100 | Minus |
| CG4088-PB | 2166 | lat-RB | 1306..2163 | 876..19 | 4290 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 16:47:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34315-RB | 3315 | CG34315-RB | 2327..3184 | 876..19 | 4290 | 100 | Minus |
| lat-RB | 2423 | CG4088-RB | 1435..2292 | 876..19 | 4290 | 100 | Minus |
| lat-RA | 3315 | CG4088-RA | 2327..3184 | 876..19 | 4290 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 16:46:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13203017..13203781 | 112..876 | 3825 | 100 | Plus |
| 2R | 25286936 | 2R | 13202859..13202952 | 19..112 | 470 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 16:46:59 has no hits.
BO10796.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:49:30 Download gff for
BO10796.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lat-PA | 1306..2166 | 18..876 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:06:40 Download gff for
BO10796.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4088-PB | 1306..2166 | 18..876 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:39:30 Download gff for
BO10796.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lat-RA | 2302..3168 | 8..876 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:51:49 Download gff for
BO10796.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lat-RA | 2327..3193 | 8..876 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:51:49 Download gff for
BO10796.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13202850..13202952 | 8..112 | 95 | <- | Plus |
| 2R | 13203018..13203781 | 113..876 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:39:30 Download gff for
BO10796.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9090355..9090457 | 8..112 | 95 | <- | Plus |
| arm_2R | 9090523..9091286 | 113..876 | 100 | | Plus |
BO10796.5prime Sequence
897 bp (802 high quality bases) assembled on 2006-04-19
> BO10796.5prime
GAAGTTATCAGTCGACATGGATCCCACCATTTCAGTGTCCAAGGGCTGTT
TTGTCTACAAAAATGGCGCTACGAGAGCAGGGAAAAAGGCGGCCAGCAAA
CGGAAGCGTCCTGCCGCAGAATCCAGTAGTCTTCTTGGCAAAGAGGTAGT
GCAGCAGCCCTTCTATGAGGAATATCGCAAGGCCTGGAATCAGATAAACG
ATCACATTGCCGACCTGCAGCACCGCAGCTATGCCCGCACTCTGGAGCAA
CTGGTGGACTTTGTGGTGGGGCAGGCAGAGCGCGACACCCCGGACGAGGT
GCTGCCCACCGCCGCCTTGCTAACGGGCATTAATCAGCCGGATCATCTCA
GCCAGTTCACGGCACTTACCCAGCGACTCCATGCCCAACGTGCTGCAATG
GTATGTGTGCTGCAGTCCAGGGATTGCGCCACTCTCAAGGCGGCCGTTGA
GACATTGGTTTTCGGGCTCGTAGAAGATAATGCAGAAGTGGAGCAAATGG
AAGACGAGGACGAGGACGAGGATGGTGCCGAACGGGATCGCAAGCGGCTA
CGTCGCTCGCAGTGCACCATGAAGCAGTTGAAGTCTTGGTACACGAACAA
TTTTGACTCGGAACAGAAGCGCCGCCAGCTGGTCGTCATCCTTCCCGACT
TTGAGTGCTTTAACGCAAGCGTGCTGCAGGATCTTATTCTAATTTTGAGC
GCTCACTGCGGCTCGCTTCCATTCGTCCTGGTCCTGGGAGTGGCCACGGC
CATGACAGCTGTCCATGGGACACTACCATACCACGTCAGCAGCAAGATTC
GTCTAAGGGTGTTCCAGACTCAAGCTGCTCCCACGGGCCTTAATGAGGTG
CTGGATAAAAGTCTGCTGTCGCCCAAGTACGCTTTCCCCCTGTCGGG
BO10796.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:10:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4088-PA | 2166 | lat-RA | 1..881 | 17..897 | 4330 | 99.6 | Plus |
| CG4088-PB | 2166 | lat-RB | 1..881 | 17..897 | 4330 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:43:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34315-RB | 3315 | CG34315-RB | 1022..1902 | 17..897 | 4360 | 99.7 | Plus |
| lat-RB | 2423 | CG4088-RB | 130..1010 | 17..897 | 4360 | 99.7 | Plus |
| lat-RA | 3315 | CG4088-RA | 1022..1902 | 17..897 | 4360 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:43:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13204313..13205120 | 849..42 | 4040 | 100 | Minus |
| 2R | 25286936 | 2R | 13204206..13204257 | 897..846 | 215 | 94.2 | Minus |
Blast to na_te.dros performed on 2015-02-11 14:43:09 has no hits.
BO10796.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:49:31 Download gff for
BO10796.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lat-PA | 1..881 | 17..897 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:06:42 Download gff for
BO10796.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4088-PB | 1..881 | 17..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:47:03 Download gff for
BO10796.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lat-RA | 992..1877 | 9..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:06:06 Download gff for
BO10796.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lat-RA | 1017..1902 | 9..897 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:06:06 Download gff for
BO10796.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13204206..13204255 | 848..897 | 94 | <- | Minus |
| 2R | 13204315..13205118 | 44..847 | 100 | <- | Minus |
| 2R | 13205182..13205213 | 9..43 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:47:03 Download gff for
BO10796.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9091711..9091760 | 848..897 | 94 | <- | Minus |
| arm_2R | 9091820..9092623 | 44..847 | 100 | <- | Minus |
| arm_2R | 9092687..9092718 | 9..43 | 91 | | Minus |
BO10796.complete Sequence
2197 bp assembled on 2008-01-16
GenBank Submission: FJ631876
> BO10796.complete
GAAGTTATCAGTCGACATGGATCCCACCATTTCAGTGTCCAAGGGCTGTT
TTGTCTACAAAAATGGCGCTACGAGAGCAGGGAAAAAGGCGGCCAGCAAA
CGGAAGCGTCCTGCCGCAGAATCCAGTAGTCTTCTTGGCAAAGAGGTAGT
GCAGCAGCCCTTCTATGAGGAATATCGCAAGGCCTGGAATCAGATAAACG
ATCACATTGCCGACCTGCAGCACCGCAGCTATGCCCGCACTCTGGAGCAA
CTGGTGGACTTTGTGGTGGGGCAGGCAGAGCGCGACACCCCGGACGAGGT
GCTGCCCACCGCCGCCTTGCTAACGGGCATTAATCAGCCGGATCATCTCA
GCCAGTTCACGGCACTTACCCAGCGACTCCATGCCCAACGTGCTGCAATG
GTATGTGTGCTGCAGTCCAGGGATTGCGCCACTCTCAAGGCGGCCGTTGA
GACATTGGTTTTCGGGCTCGTAGAAGATAATGCAGAAGTGGAGCAAATGG
AAGACGAGGACGAGGACGAGGATGGTGCCGAACGGGATCGCAAGCGGCTA
CGTCGCTCGCAGTGCACCATGAAGCAGTTGAAGTCTTGGTACACGAACAA
TTTTGACTCGGAACAGAAGCGCCGCCAGCTGGTCGTCATCCTTCCCGACT
TTGAGTGCTTTAACGCAAGCGTGCTGCAGGATCTTATTCTAATTTTGAGC
GCTCACTGCGGCTCGCTTCCATTCGTCCTGGTCCTGGGAGTGGCCACGGC
CATGACAGCTGTCCATGGGACACTACCATACCACGTCAGCAGCAAGATTC
GTCTAAGGGTGTTCCAGACTCAAGCTGCTCCCACGGGCCTTAATGAGGTG
CTGGATAAAGTTCTGCTGTCGCCCAAGTACGCTTTCCACCTGTCGGGAAA
GACATTCAAGTTCCTGACGCACATCTTCCTATACTACGACTTCTCCATCC
ACGGCTTTATTCAGGGCTTCAAGTACTGCCTGATGGAACACTTCTTTGGT
GGGAATGCCTTTGCTCTTTGCACAGACTACAGCAAAGCATTGGGACGCAT
AAAGCAGCTGACCCACGAGGATATGGAAACCATCAGAAGGCTCCCATCGT
TTCGTCCGTACGTCGAGCAGATCAATGATTGCAAACGCATCATAGCCGTG
CTCACGGACGATGACTACCTAAAGAAGAAACTGCCGCAGTTGCTGCGCGA
CTGCCTGCTCCACTTCCTGCTTTTCCGCTGCTCTCTGGAGTTCCTTACAG
AGCTGGTTGGTGATTTGCCGCGCTGTCCGCTGGGAAAGCTACGCCGGGAA
CTGTACGTCAACTGTCTTAATCGTGCGATCATTTCGACGCCGGAGTACAA
GGAGTGCCTGCAGATGCTAAGCTTTCTGTCCAAGGACGAATTTGTTGCTA
AAGTGAATCGAGCCCTGGAAAGAACCGAACAGTTCCTGGTTGAAGAAATT
GCTCCGCTGGAATTGGGCGAGGCCTGCACTGCTGTGCTGAGACCTAAGTT
AGAAGCTATACGCCTTGCAGTGGACGAAGTGGTCAAGGCCACCATGGCGA
CAATTACAACGACATCGCCCAATGAAACCCGCCAGGCGACTGACCATTTG
ACTCCGGTGGCCTCGCGTCAAGAATTGAAAGATCAGCTCCTACAGCGTAG
CAAGGAGGACAAGATGCGGCATCAGCTGAACACGCCCACCACCCAATTCG
GACGAGCTCTACAAAAGACTCTGCAGCTTATCGAAACGCAGATTGTACAG
GATCATCTCCGTGCGCTGCAGGATGCACCACCTATTCACGAACTTTTTGT
GTTCAGCGACATTGCTACCGTGCGGCGAAACATAATTGGTGCTCCGCGGG
CTGCACTGCACACTGCCCTGAATAATCCACATTTTTACATGCAGTGCAAG
TGCTGCGAGCTACAAGATCAATCACTGCTGGTTGGCACACTGCCCGATCT
CTCCGTGGTTTACAAGCTGCACCTGGAGTGCGGTCGCATGATCAACCTTT
TCGACTGGCTGCAGGCCTTTCGATCTGTTGTGAGCGACAGCGACCACGAG
GAAGTGGCCCAGGAACAAATCGATCCCCAGATCCAGGCCCGATTCACGCG
TGCCGTAGCCGAGTTGCAGTTTCTGGGGTACATTAAGATGTCGAAGCGCA
AGACGGATCATGCCACTCGATTAACCTGGGCAAGCTTTCTAGACCAT
BO10796.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:44:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lat-RB | 2166 | CG4088-PB | 1..2163 | 17..2179 | 10815 | 100 | Plus |
| lat-RA | 2166 | CG4088-PA | 1..2163 | 17..2179 | 10815 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:44:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34315-RB | 3315 | CG34315-RB | 1022..3184 | 17..2179 | 10815 | 100 | Plus |
| lat-RB | 2423 | CG4088-RB | 130..2292 | 17..2179 | 10815 | 100 | Plus |
| lat-RA | 3315 | CG4088-RA | 1022..3184 | 17..2179 | 10815 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:44:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13203017..13204257 | 2086..846 | 6205 | 100 | Minus |
| 2R | 25286936 | 2R | 13204313..13205120 | 849..42 | 4040 | 100 | Minus |
| 2R | 25286936 | 2R | 13202859..13202952 | 2179..2086 | 470 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:44:17 has no hits.
BO10796.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:56:43 Download gff for
BO10796.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lat-RA | 1..2166 | 17..2180 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:34:20 Download gff for
BO10796.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34315-RB | 997..3159 | 17..2181 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:39 Download gff for
BO10796.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lat-RA | 997..3159 | 17..2181 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:56:43 Download gff for
BO10796.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34315-RA | 992..3168 | 9..2190 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:25:43 Download gff for
BO10796.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lat-RA | 1022..3184 | 17..2181 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:25:43 Download gff for
BO10796.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13202855..13202952 | 2086..2181 | 97 | <- | Minus |
| 2R | 13203018..13204255 | 848..2085 | 100 | <- | Minus |
| 2R | 13204315..13205118 | 44..847 | 100 | <- | Minus |
| 2R | 13205182..13205208 | 17..43 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:39 Download gff for
BO10796.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9090360..9090457 | 2086..2181 | 97 | <- | Minus |
| arm_2R | 9090523..9091760 | 848..2085 | 100 | <- | Minus |
| arm_2R | 9091820..9092623 | 44..847 | 100 | <- | Minus |
| arm_2R | 9092687..9092713 | 17..43 | 100 | | Minus |
BO10796.pep Sequence
Translation from 16 to 2197
> BO10796.pep
MDPTISVSKGCFVYKNGATRAGKKAASKRKRPAAESSSLLGKEVVQQPFY
EEYRKAWNQINDHIADLQHRSYARTLEQLVDFVVGQAERDTPDEVLPTAA
LLTGINQPDHLSQFTALTQRLHAQRAAMVCVLQSRDCATLKAAVETLVFG
LVEDNAEVEQMEDEDEDEDGAERDRKRLRRSQCTMKQLKSWYTNNFDSEQ
KRRQLVVILPDFECFNASVLQDLILILSAHCGSLPFVLVLGVATAMTAVH
GTLPYHVSSKIRLRVFQTQAAPTGLNEVLDKVLLSPKYAFHLSGKTFKFL
THIFLYYDFSIHGFIQGFKYCLMEHFFGGNAFALCTDYSKALGRIKQLTH
EDMETIRRLPSFRPYVEQINDCKRIIAVLTDDDYLKKKLPQLLRDCLLHF
LLFRCSLEFLTELVGDLPRCPLGKLRRELYVNCLNRAIISTPEYKECLQM
LSFLSKDEFVAKVNRALERTEQFLVEEIAPLELGEACTAVLRPKLEAIRL
AVDEVVKATMATITTTSPNETRQATDHLTPVASRQELKDQLLQRSKEDKM
RHQLNTPTTQFGRALQKTLQLIETQIVQDHLRALQDAPPIHELFVFSDIA
TVRRNIIGAPRAALHTALNNPHFYMQCKCCELQDQSLLVGTLPDLSVVYK
LHLECGRMINLFDWLQAFRSVVSDSDHEEVAQEQIDPQIQARFTRAVAEL
QFLGYIKMSKRKTDHATRLTWASFLDH
BO10796.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:19:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lat-PB | 721 | CG4088-PB | 1..721 | 1..721 | 3721 | 100 | Plus |
| lat-PA | 721 | CG4088-PA | 1..721 | 1..721 | 3721 | 100 | Plus |
