Clone BO10807 Report

Search the DGRC for BO10807

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:108
Well:7
Vector:pDNR-Dual
Associated Gene/Transcripttst-RA
Protein status:BO10807.pep: validated full length
Sequenced Size:3625

Clone Sequence Records

BO10807.3prime Sequence

926 bp (797 high quality bases) assembled on 2006-04-19

> BO10807.3prime
ATGGTCTAGAAAGCTTGCCAGTTCTGTGTACAAGGATGCGGTGAAAACAA
TATCGCGCTTGATAGCAGCCGACGCCTCCTCCATCTTCGACTGCAGTCCC
GGATTGCCAATCCGAATGGCGGCCGTTTTAACATCACGCAGCGTTTCATT
CAGCTGCTGAATGCAGCGAACAATGATGCCCTCCTGCACCGTCGTCAGTT
TCATAATCTCAGCAAAGGGCTTATTTCTAGCCCACTCGTAGACCACCTCC
AGCAGACCAAAGTTCAGGCGATTATCGGTCTCGATGGCTGCCTGAAAGCG
CTGCTCCTCGGCAAGAATTGTATCGTTGATCTGCTCAAATGCCGCCACGC
ACTCCTTCAACGCCTCTGGTATTACCGGCTTATCCTGCATCTTCGCCTGG
AAGACAAGGCCGGAGAGCAAGGCGGCTATTTCTGCCGGCTCGAGATCGTT
GAACATGTTGCATAGTATGAGCTCCGTGATAAGTAGCTCATTTTGGCCCA
TCTCACAGGCCACTTTTCCCTTAAGTGTGACCTCGTCCAGTTCATCTATG
TATTTCAGGGCTCGCAGCACCTTCAATTTGTTACAATAGTCCGGATAGAG
GGTCAAATTTCTCGCGGAGTTCTTGAAGCGCAGCTCCTCGATGTGAATCT
CCAGCATTCGGCGCTCGTACACTTTGGCGAACTCCTGTTCGAATCCGGCA
ATGTTGGTATGTGGCAGAAATTCGCCAACCTTACGGAGCAGGTGATCAAC
GTAGTTCAGCATGGCCACCTCGCTGTCAGCGTTCACGATTATTTCCTTGG
AAAGATTAACGTATTTGATGTTATCCGGGTTGTCAATGTAACTCTCATTG
AGCTGGTTTAGCTCGGTCACCGCCTTGACCACCGATCCACTTGGCGGGGA
GTCCTTGACCGCTCCAGCTGCCGCTG

BO10807.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:10:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG10210-PA 3594 tst-RA 2702..3591 908..19 4450 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:26:48
Subject Length Description Subject Range Query Range Score Percent Strand
tst-RB 3821 CG10210-RB 2780..3688 926..19 4520 99.9 Minus
tst-RA 4332 CG10210-RA 2780..3688 926..19 4520 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:26:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23769309..23770016 220..926 3490 99.9 Plus
3R 32079331 3R 23769043..23769245 19..221 1015 100 Plus
Blast to na_te.dros performed on 2015-02-11 11:26:46 has no hits.

BO10807.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:49:45 Download gff for BO10807.3prime
Subject Subject Range Query Range Percent Splice Strand
tst-PA 2683..3594 16..926 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:07:01 Download gff for BO10807.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10210-PA 2683..3594 16..926 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 21:56:00 Download gff for BO10807.3prime
Subject Subject Range Query Range Percent Splice Strand
tst-RA 2780..3688 19..926 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:40:10 Download gff for BO10807.3prime
Subject Subject Range Query Range Percent Splice Strand
tst-RA 2780..3688 19..926 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:40:10 Download gff for BO10807.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 23769043..23769243 19..219 100 <- Plus
3R 23769309..23770016 220..926 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 21:56:00 Download gff for BO10807.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19594765..19594965 19..219 100 <- Plus
arm_3R 19595031..19595738 220..926 99   Plus

BO10807.5prime Sequence

881 bp (812 high quality bases) assembled on 2006-04-19

> BO10807.5prime
GAAGTTATCAGTCGACATGAATGAGATTAGGGGCGAGGATAACCTCGAAC
GGCTGCGCAACTATATCCTGCGACCGGAGCTGTCCCTCCACAATCCCCTG
CCGGATGTTTTGCCCCGCAAATTCGATCCGATGCGCCTGTTGCATGCGCC
CCGTTGCCCGGGAAGCACTAAGTTGGCTCCTCGCCGCGACCAGAGTGGTC
ACATACTTGAGTTCGTGGAATTGGACTTGGAGGCCGTGGGCGCCAATGCC
AACAACTCGATGTCCATGCAGCGGGAGCCGGGCTTGCTGGAAGACGCGAC
GCGTGGCTCCCACTCCAATTTTCCCTTTTGGCCAGGCGGTTTCGATGAGC
AGCGCCAGCAGATCGCAGCTCTGGATGTCAGCAACTTTCAGTTCGGGGAC
AAGCTGCTAACGGTGCCACCGGGCTTCAGCTCTGGCTACGACTTCTTCCA
ATCGCAATCTGTAACACTGCCGCCTGTGGTCGCCGATCCCAGTAACGTTG
ATCTATTGGAAAACCTAGAACAGGATCTGGACGTCCAGGAGTGGATGAAG
CTTACGCGTAGTGAGGAAACAAGCTCCACTGGAACGCCTAAAAGTCCAAA
ACAGTCGAACGTGCAATTACCTTCAGAGGAGTTCAGAGACGTGGACGATC
ACATTATGAAGGCTGACCTAAAGCCTGTGCTAAACATTTCCACCACAACC
AAGAACTTCAAGAGCGATTGGGCCGAAATGGTGGACATAAGCCAACCCAT
CAATAACTTTAAAGAGCAGATACCATGCCCCGCCATGGATTTCCCCTTCG
AACTGGATGTCTTTCAAAAGCAGGCCATTCTNCAGCTGGAACAACGCCAG
TACGTTTTCGTTGCAGCGCATACATCTGCTG

BO10807.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:10:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG10210-PA 3594 tst-RA 1..865 17..881 4281 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:43:17
Subject Length Description Subject Range Query Range Score Percent Strand
tst-RB 3821 CG10210-RB 98..962 17..881 4299 99.8 Plus
tst-RA 4332 CG10210-RA 98..962 17..881 4299 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:43:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23771898..23772762 881..17 4299 99.8 Minus
Blast to na_te.dros performed on 2015-02-12 06:43:15 has no hits.

BO10807.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:49:47 Download gff for BO10807.5prime
Subject Subject Range Query Range Percent Splice Strand
tst-PA 1..865 17..881 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:07:02 Download gff for BO10807.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10210-PA 1..865 17..881 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 13:41:17 Download gff for BO10807.5prime
Subject Subject Range Query Range Percent Splice Strand
tst-RA 98..962 17..881 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:18:43 Download gff for BO10807.5prime
Subject Subject Range Query Range Percent Splice Strand
tst-RA 98..962 17..881 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:18:43 Download gff for BO10807.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 23771898..23772762 17..881 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 13:41:17 Download gff for BO10807.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19597620..19598484 17..881 99   Minus

BO10807.complete Sequence

3625 bp (3625 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ631879

> BO10807.complete
GAAGTTATCAGTCGACATGAATGAGATTAGGGGCGAGGATAACCTCGAAC
GGCTGCGCAACTATATCCTGCGACCGGAGCTGTCCCTCCACAATCCCCTG
CCGGATGTTTTGCCCCGCAAATTCGATCCGATGCGCCTGTTGCATGCGCC
CCGTTGCCCGGGAAGCACTAAGTTGGCTCCTCGCCGCGACCAGAGTGGTC
ACATACTTGAGTTCGTGGAATTGGACTTGGAGGCCGTGGGCGCCAATGCC
AACAACTCGATGTCCATGCAGCGGGAGCCGGGCTTGCTGGAAGACGCGAC
GCGTGGCTCCCACTCCAATTTTCCCTTTTGGCCAGGCGGTTTCGATGAGC
AGCGCCAGCAGATCGCAGCTCTGGATGTCAGCAACTTTCAGTTCGGGGAC
AAGCTGCTAACGGTGCCACCGGGCTTCAGCTCTGGCTACGACTTCTTCCA
ATCGCAATCTGTAACACTGCCGCCTGTGGTCGCCGATCCCAGTAACGTTG
ATCTATTGGAAAACCTAGAACAGGATCTGGACGTCCAGGAGTGGATGAAG
CTTACGCGTAGTGAGGAAACAAGCTCCACTGGAACGCCTAAAAGTCCAAA
ACAGTCGAACGTGCAATTACCTTCAGAGGAGTTCAGAGACGTGGACGATC
ACATTATGAAGGCTGACCTAAAGCCTGTGCTAAACATTTCCACCACAACC
AAGAACTTCAAGAGCGATTGGGCCGAAATGGTGGACATAAGCCAACCCAT
CAATAACTTTAAAGAGCAGATACCATGCCCCGCCATGGATTTCCCCTTCG
AACTGGATGTCTTTCAAAAGCAGGCCATTCTCAAGCTGGAACAACGCCAG
TACGTTTTCGTTGCAGCGCATACATCTGCTGGCAAGACAGTTGTAGCTGA
ATATGCCATCGCTCTGTCCAAGCGTGATCTCACCCGCACCATCTACACAT
CGCCGATCAAGGCGTTGTCCAATCAGAAGTACCGCGACTTCCGAAAAACC
TTCAAGGATGTGGGCCTTATTACAGGTGACCTGCAGATAGAGCCCACCGC
CTCTTGTCTGATCATGACCACCGAGATTCTCCGCTCAATGCTGTATTGCG
GCAGCGATGTCACGCGGGATCTGGAGTGGGTGATCTTCGACGAGGTGCAC
TATATTAATAACCCAGAAAGAGGACATGTCTGGGAGGAGGTCATTATACT
CCTGCCCGAACATGTTAACATTATAATGCTCAGTGCCACCGTGCCCAATA
CCTTGGAATTGGCCGACTGGGTTGGGAGCACCAAGAAGAGAAAGGTCTAT
GTGATCAGCACTTTAAAACGACCAGTGCCTCTGACGCATTTCCTCTATAC
TGGTGCTGGAGGAAAGAGTCGCGATGACATCTTCCTCCTGGTGGACGCCC
AGGGAAAATATCTGCAGGGTAACTACGAGAAGGCCGTGGAGCGCAAGAAG
GAGATGCAAGGCAAGGCCAAGGGCGGCGGTGGTGGGCCAAGAAACCATTT
AAATGCCAAGCAGGAGCAGTACACCTGGATCGGACTAATTGACTTCCTGA
GGCGGAGCAACATGATGCCAGTGGTGGCTTTCACTCTGTCCCGCAATCGG
TGCGACTCCAATTTGGCCGCTTTGCAGTCAGTGGACCTGAACACGGAAAA
GGAGAAGGGTGCAGTGCAGAAGTTCTTCCTGCAGTGTCTGGCAAAGCTGA
AGCCACCGGACCGTACAATTCCGCAGGTTCTTGTTCTCAAGGACGCTTTG
GAGAGAGGAATAGGTGTGCATCATAGCGGCATCTTGCCCATTCTTAAGGA
GATTGTCGAGATGCTCTTTCAAAATGGGCTAGTTAAGCTGCTTTTCGCCA
CCGAAACGTTTGCCATGGGCGTCAACATGCCCGCGCGCACTGTGGTCTTC
GACTCCTGCAAAAAGTTTGACGGACTGGAGATGCGTAACCTGAAACCAGG
CGAATACATCCAAATGGCCGGCAGAGCTGGACGCCGTGGGCACGACGAGA
CAGGTACGGCGATCATTATGTGCAAGGGCAGTGTGCCACCATCGATGGAG
CTACGGCCCATGATTCTGGGCCTGCCGGAGAAGTTGCAGTCACAGTTCAT
TCTGCGCTATGCGGTAATCCTCACATGTCTGCGCATCGAGAGTATCAAGG
TGGAGGATATCATGAAGTTCAGTTTCAAGGAGTTTAACCTAAAGCTCCAA
TTGCCTACGCAGCAGAAGCAACTTCGTCTGGCCGAAGACAAGTTTGCCAT
GCTCCCAACTCTCGGCGAACATCTGCAACCACTTGTCAATTTTTATGACA
AAGCCGTGGAGTATTGGAAAGAAAAGCACCGCATCATGAAATTTGTTGTT
ACTCAACCCAAGATCCAAAAGGAACTGAAAGCTGGCCGCGTCATTGTGAT
CACGCAGGGCAAGCACTACAACAAACTGGCCATTCTACTCAACACCAAAT
CTGTCCCGGGCAAGGATACCATCTATAAGGTGCTAGTGCTGGACCATCAA
TTCAAGGCAAAGGATAGCAACAGCCTCCAGCAAGGCGAGCTCTATTACAA
AATACTTTCGCTGACGCCTAGAAACATGACCTTCCAACCAGTGGGAATCG
GAGGACACACTGTGCTGGACATCAAGGCTATAGACATTATCAGTATCACC
AAGAGCACATTGAAAGTCGATGCAGATGCGATTATCCGGAATTGGGAGCA
GCGGCAGCTGGAGCGGTTCAAGGACTCCCCGCCAAGTGGATCGGTGGTCA
AGGCGGTGACCGAGCTAAACCAGCTCAATGAGAGTTACATTGACAACCCG
GATAACATCAAATACGTTAATCTTTCCAAGGAAATAATCGTGAACGCTGA
CAGCGAGGTGGCCATGCTGAACTACGTTGATCACCTGCTCCGTAAGGTTG
GCGAATTTCTGCCACATACCAACATTGCCGGATTCGAACAGGAGTTCGCC
AAAGTGTACGAGCGCCGAATGCTGGAGATTCACATCGAGGAGCTGCGCTT
CAAGAACTCCGCGAGAAATTTGACCCTCTATCCGGACTATTGTAACAAAT
TGAAGGTGCTGCGAGCCCTGAAATACATAGATGAACTGGACGAGGTCACA
CTTAAGGGAAAAGTGGCCTGTGAGATGGGCCAAAATGAGCTACTTATCAC
GGAGCTCATACTATGCAACATGTTCAACGATCTCGAGCCGGCAGAAATAG
CCGCCTTGCTCTCCGGCCTTGTCTTCCAGGCGAAGATGCAGGATAAGCCG
GTAATACCAGAGGCGTTGAAGGAGTGCGTGGCGGCATTTGAGCAGATCAA
CGATACAATTCTTGCCGAGGAGCAGCGCTTTCAGGCAGCCATCGAGACCG
ATAATCGCCTGAACTTTGGTCTGCTGGAGGTGGTCTACGAGTGGGCTAGA
AATAAGCCCTTTGCTGAGATTATGAAACTGACGACGGTGCAGGAGGGCAT
CATTGTTCGCTGCATTCAGCAGCTGAATGAAACGCTGCGTGATGTTAAAA
CGGCCGCCATTCGGATTGGCAATCCGGGACTGCAGTCGAAGATGGAGGAG
GCGTCGGCTGCTATCAAGCGCGATATTGTTTTCACCGCATCCTTGTACAC
AGAACTGGCAAGCTTTCTAGACCAT

BO10807.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:07:28
Subject Length Description Subject Range Query Range Score Percent Strand
tst-RB 3594 CG10210-PB 1..3591 17..3607 17955 100 Plus
tst-RA 3594 CG10210-PA 1..3591 17..3607 17955 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:07:29
Subject Length Description Subject Range Query Range Score Percent Strand
tst-RB 3821 CG10210-RB 98..3688 17..3607 17955 100 Plus
tst-RA 4332 CG10210-RA 98..3688 17..3607 17955 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:07:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23770441..23772762 2338..17 11610 100 Minus
3R 32079331 3R 23769309..23770377 3406..2338 5345 100 Minus
3R 32079331 3R 23769043..23769245 3607..3405 1015 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:07:26 has no hits.

BO10807.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:56:45 Download gff for BO10807.complete
Subject Subject Range Query Range Percent Splice Strand
tst-RA 1..3594 17..3610 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:13:57 Download gff for BO10807.complete
Subject Subject Range Query Range Percent Splice Strand
tst-RA 46..3636 17..3607 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:34:16 Download gff for BO10807.complete
Subject Subject Range Query Range Percent Splice Strand
tst-RA 98..3688 17..3609 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:56:45 Download gff for BO10807.complete
Subject Subject Range Query Range Percent Splice Strand
tst-RA 46..3636 17..3607 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:03:50 Download gff for BO10807.complete
Subject Subject Range Query Range Percent Splice Strand
tst-RA 98..3688 17..3609 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:03:50 Download gff for BO10807.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23770441..23772762 17..2338 100   Minus
3R 23769040..23769243 3407..3609 99 <- Minus
3R 23769309..23770376 2339..3406 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:34:16 Download gff for BO10807.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19594762..19594965 3407..3609 99 <- Minus
arm_3R 19595031..19596098 2339..3406 100 <- Minus
arm_3R 19596163..19598484 17..2338 100   Minus

BO10807.pep Sequence

Translation from 16 to 3625

> BO10807.pep
MNEIRGEDNLERLRNYILRPELSLHNPLPDVLPRKFDPMRLLHAPRCPGS
TKLAPRRDQSGHILEFVELDLEAVGANANNSMSMQREPGLLEDATRGSHS
NFPFWPGGFDEQRQQIAALDVSNFQFGDKLLTVPPGFSSGYDFFQSQSVT
LPPVVADPSNVDLLENLEQDLDVQEWMKLTRSEETSSTGTPKSPKQSNVQ
LPSEEFRDVDDHIMKADLKPVLNISTTTKNFKSDWAEMVDISQPINNFKE
QIPCPAMDFPFELDVFQKQAILKLEQRQYVFVAAHTSAGKTVVAEYAIAL
SKRDLTRTIYTSPIKALSNQKYRDFRKTFKDVGLITGDLQIEPTASCLIM
TTEILRSMLYCGSDVTRDLEWVIFDEVHYINNPERGHVWEEVIILLPEHV
NIIMLSATVPNTLELADWVGSTKKRKVYVISTLKRPVPLTHFLYTGAGGK
SRDDIFLLVDAQGKYLQGNYEKAVERKKEMQGKAKGGGGGPRNHLNAKQE
QYTWIGLIDFLRRSNMMPVVAFTLSRNRCDSNLAALQSVDLNTEKEKGAV
QKFFLQCLAKLKPPDRTIPQVLVLKDALERGIGVHHSGILPILKEIVEML
FQNGLVKLLFATETFAMGVNMPARTVVFDSCKKFDGLEMRNLKPGEYIQM
AGRAGRRGHDETGTAIIMCKGSVPPSMELRPMILGLPEKLQSQFILRYAV
ILTCLRIESIKVEDIMKFSFKEFNLKLQLPTQQKQLRLAEDKFAMLPTLG
EHLQPLVNFYDKAVEYWKEKHRIMKFVVTQPKIQKELKAGRVIVITQGKH
YNKLAILLNTKSVPGKDTIYKVLVLDHQFKAKDSNSLQQGELYYKILSLT
PRNMTFQPVGIGGHTVLDIKAIDIISITKSTLKVDADAIIRNWEQRQLER
FKDSPPSGSVVKAVTELNQLNESYIDNPDNIKYVNLSKEIIVNADSEVAM
LNYVDHLLRKVGEFLPHTNIAGFEQEFAKVYERRMLEIHIEELRFKNSAR
NLTLYPDYCNKLKVLRALKYIDELDEVTLKGKVACEMGQNELLITELILC
NMFNDLEPAEIAALLSGLVFQAKMQDKPVIPEALKECVAAFEQINDTILA
EEQRFQAAIETDNRLNFGLLEVVYEWARNKPFAEIMKLTTVQEGIIVRCI
QQLNETLRDVKTAAIRIGNPGLQSKMEEASAAIKRDIVFTASLYTELASF
LDH

BO10807.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:35:54
Subject Length Description Subject Range Query Range Score Percent Strand
tst-PB 1197 CG10210-PB 1..1197 1..1197 6152 100 Plus
tst-PA 1197 CG10210-PA 1..1197 1..1197 6152 100 Plus
l(2)35Df-PA 1055 CG4152-PA 144..1054 255..1194 1345 35 Plus
CG5205-PA 2183 CG5205-PA 1355..1715 280..668 249 26.9 Plus
mus308-PA 2059 CG6019-PA 233..627 259..669 217 25.5 Plus