Clone Sequence Records
BO10808.3prime Sequence
810 bp (809 high quality bases) assembled on 2006-04-19
> BO10808.3prime
ATGGTCTAGAAAGCTTGCCCAGCCAGGTGGCTTCTGGTTGGGATATCCAC
CCTGCTGGTTGGCATAACTGCCTGGGTATGTTCCGTAGTGGCCGGGTGGC
GGTCCCTGCGGGAATCCCTGGTACTGATAGTTACCAGGATACGGCAAGGT
GGCGTATGGATTGAAGCTCTGCGGCATCGGAGCGGGCACATAGGCGGGGT
AGGGCACACCTGGCTGGGCTCCATATGGAATAGGCATGCCTTGCACTTGG
GCCGGATACGGAATGTTGGCCGTTGATGCGGCAGGTGGCACACTAGGTGC
GGAGCCAGGTGGAATATCGCTGCCACTGCCCGATGTGGATGCATAGTGCG
AGGGAAGGGCTGGAGTGGCCGGACATGCCTGGCGGCTGGACTCTGTGGTC
AAGTCCTTGAGCAGCTCCTCCTTCTCTGTCTTGCGGGCGAACACAAAGTC
GCTGATCTTGTTCTGGAACACAACCAGCAACTGCGTGAGGTCGTTGTAGA
ACTTGGTGCCCTCCTGCAGATTTCCAGAAAGTTCAATGTAGCTATCGAAG
GCGGTTGCTAGCTCCTGGTATAAAGTATCCCGCGAGCTGCCGCAGCTACC
AGTTTCAGAGACAAAGGCACCATGGGCGCTTTGGATCTCGCTGACCAAGG
ACTGCTGACGTTCCACGCTCTCGCGCACCTGCTGCTGCAGGGGATTGAGC
ACTTGGCCAATACGCGCCAACGAGAGGGCGGGCTCGTCAATAGCGCCATC
CTTCTGCAGGGCAATCAAAAACTCGTCCTTCATGTTGAAAGTGGCACCTT
TCAGCTCGGA
BO10808.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:10:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12876-PA | 2511 | CG12876-RA | 1717..2508 | 810..19 | 3960 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:57:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ALiX-RA | 2892 | CG12876-RA | 1848..2639 | 810..19 | 3960 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:57:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27697135..27697627 | 318..810 | 2465 | 100 | Plus |
| 3R | 32079331 | 3R | 27696889..27697075 | 132..318 | 935 | 100 | Plus |
| 3R | 32079331 | 3R | 27696719..27696831 | 19..131 | 565 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 12:57:44 has no hits.
BO10808.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:49:48 Download gff for
BO10808.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12876-PA | 1718..2511 | 15..809 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:07:03 Download gff for
BO10808.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12876-PA | 1718..2511 | 15..809 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:32:45 Download gff for
BO10808.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ALiX-RA | 1849..2642 | 15..809 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:32:35 Download gff for
BO10808.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ALiX-RA | 1849..2642 | 15..809 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:32:35 Download gff for
BO10808.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27696715..27696831 | 15..131 | 98 | <- | Plus |
| 3R | 27696889..27697074 | 132..317 | 100 | <- | Plus |
| 3R | 27697135..27697626 | 318..809 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:32:45 Download gff for
BO10808.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23522437..23522553 | 15..131 | 98 | <- | Plus |
| arm_3R | 23522611..23522796 | 132..317 | 100 | <- | Plus |
| arm_3R | 23522857..23523348 | 318..809 | 100 | | Plus |
BO10808.5prime Sequence
923 bp (819 high quality bases) assembled on 2006-04-19
> BO10808.5prime
GAAGTTATCAGTCGACATGTCGAAGTTTCTGGGCGTGCCGCTGAAGAAGC
CGTCGGAGGTGGATGTGATCAAGCCGCTGAACAATCTCATCCAGAGCACC
TACAACGGTGCGTCGGAGGAGGAGAAGGGCAAGTACGGAGAGGCCGTCAA
CGAATTTTCGAAACAACGCAATACGGCAATTTGGAAATTCTTTGAAAAGT
ACGAGGCTTCGCTGGAGATTGTGTACGCCTATTATGACCAGATTTGTGCG
CTGGAGACCAAGATATCGGTTAGCGAACTTCAGATACCCTTTAAGTGGAA
GGATGCCTTCGACAAGGGCTCCATTTTCGGCGGCAAGATCAGCCTGACTC
ACACCTCCTTGCTTTACGAGAAGGTCTGTGTGCTCTTCAACATTGCCGCC
CTGCAGAGCAACATCGCTGCCAACCAGTCCCTGGATTCGGATGACGGCCT
TAAGCTGACCATCAAACTGCTCCAGCAGAGCGCCGGCATCTTTCAGTATT
TGAAGGGAGCGACGCCAGCGGCAGTGCCCTCGGAACCCACGCCCGATCTC
AGCCAGGATACGCTAACCGTGCTGCAGGCTCTGATGGTCGCCCAAGCGCA
GGAGGTTTTCATTCTGAAGGCAATTAAGGATAACTTGAAGGACCAGATCA
TCGCCAAGCTTTGCTGCCAGGCGGAGGAGTCTTACGCCGATGTGCTGCGC
GCTATGCAAAAGGAGTCTGTGCGCAGCCTGTGGGAGAAGGAGTGGATACC
TACTATTGCTGGAAAGCAGGCCGGCTTCCATGCCCTCACCCAGTTGTACC
AGAGTCTGGTGTGCCGTGCCGCCAAGAAGATTGGCGAGGAGATTGCTCGC
TTGCGCAACGCCATTGATCTTTTCAGGCGGCTCAGACGCGTAGCGGAAAT
GAGACCTACTTGGATGAATACTT
BO10808.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:10:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12876-PA | 2511 | CG12876-RA | 1..859 | 17..875 | 4295 | 100 | Plus |
| CG12876-PA | 2511 | CG12876-RA | 860..908 | 875..923 | 245 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:55:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ALiX-RA | 2892 | CG12876-RA | 132..1039 | 17..923 | 4515 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:55:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27698436..27698731 | 923..629 | 1430 | 99.7 | Minus |
| 3R | 32079331 | 3R | 27699086..27699367 | 629..348 | 1410 | 100 | Minus |
| 3R | 32079331 | 3R | 27699768..27699979 | 228..17 | 1060 | 100 | Minus |
| 3R | 32079331 | 3R | 27699435..27699553 | 347..229 | 595 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:55:55 has no hits.
BO10808.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:49:49 Download gff for
BO10808.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12876-PA | 1..908 | 17..923 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:07:05 Download gff for
BO10808.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12876-PA | 1..908 | 17..923 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 11:04:12 Download gff for
BO10808.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ALiX-RA | 132..1039 | 17..923 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:50:03 Download gff for
BO10808.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ALiX-RA | 132..1039 | 17..923 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:50:03 Download gff for
BO10808.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27698436..27698730 | 630..923 | 99 | <- | Minus |
| 3R | 27699086..27699367 | 348..629 | 100 | <- | Minus |
| 3R | 27699435..27699553 | 229..347 | 100 | <- | Minus |
| 3R | 27699768..27699979 | 17..228 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 11:04:12 Download gff for
BO10808.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23524158..23524452 | 630..923 | 99 | <- | Minus |
| arm_3R | 23524808..23525089 | 348..629 | 100 | <- | Minus |
| arm_3R | 23525157..23525275 | 229..347 | 100 | <- | Minus |
| arm_3R | 23525490..23525701 | 17..228 | 100 | | Minus |
BO10808.complete Sequence
2542 bp (2542 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631880
> BO10808.complete
GAAGTTATCAGTCGACATGTCGAAGTTTCTGGGCGTGCCGCTGAAGAAGC
CGTCGGAGGTGGATGTGATCAAGCCGCTGAACAATCTCATCCAGAGCACC
TACAACGGTGCGTCGGAGGAGGAGAAGGGCAAGTACGGAGAGGCCGTCAA
CGAATTTTCGAAACAACGCAATACGGCAATTTGGAAATTCTTTGAAAAGT
ACGAGGCTTCGCTGGAGATTGTGTACGCCTATTATGACCAGATTTGTGCG
CTGGAGACCAAGATATCGGTTAGCGAACTTCAGATACCCTTTAAGTGGAA
GGATGCCTTCGACAAGGGCTCCATTTTCGGCGGCAAGATCAGCCTGACTC
ACACCTCCTTGCTTTACGAGAAGGTCTGTGTGCTCTTCAACATTGCCGCC
CTGCAGAGCAACATCGCTGCCAACCAGTCCCTGGATTCGGATGACGGCCT
TAAGCTGACCATCAAACTGCTCCAGCAGAGCGCCGGCATCTTTCAGTATT
TGAAGGGAGCGACGCCAGCGGCAGTGCCCTCGGAACCCACGCCCGATCTC
AGCCAGGATACGCTAACCGTGCTGCAGGCTCTGATGGTCGCCCAAGCGCA
GGAGGTTTTCATTCTGAAGGCAATTAAGGATAACTTGAAGGACCAGATCA
TCGCCAAGCTTTGCTGCCAGGCGGAGGAGTCTTACGCCGATGTGCTGCGC
GCTATGCAAAAGGAGTCTGTGCGCAGCCTGTGGGAGAAGGAGTGGATACC
TACTATTGCTGGAAAGCAGGCCGGCTTCCATGCCCTCACCCAGTTGTACC
AGAGTCTGGTGTGCCGTGCCGCCAAGAAGATTGGCGAGGAGATTGCTCGC
TTGCGCAACGCCATTGATCTTTTCAAGGCGGCTCAGACGCGTAGCGGAAA
TGAGACCTACTTGGATGAATACTTCAGCCGCGCCAAGCGCAACTTGACCG
AGTCCACCAAGGACAACGAGTTCATCTACAACGAGATCATACCAGAGCTG
AGCACCTTGACCTCTCCTGGAAAAGCCCAGTTGGCCAAGCCACTGCCCAT
TGCTGTCCCCTTGGCTGAAAATTTTAAGGATATATTCAGCAGCCTAGTGC
CCGTGGAGCTTCATCGTGCTCTGACCGCCTCCGATATGCGCCGCAATGAG
ATCGTCAACGTGGAGATCATGAAGTTGCGTGAAGCCACCCAGACTCTGAA
TGCTGTTTTGGCCAGCTTGAATCTTCCAGCGGCCGTGGAGACAGCCGATG
GCAACAGTGGGCTTCCGCCGTCGCTAAAGGAAAAGGCCAATGAAGTTCGC
CAGAAGGGGGGCATTGAAAATGTGCAGACGATGCTTAAGGATCTTCCCGA
GCTTCTGAACCGCAACCGCGAGATCCTCGACGAAACCGAGCGGCTCTTGG
ACGAAGAACGCGACTCCGATAACCAGTTGCGGGCGCAGTTCAAGGATCGT
TGGACTCGCATCAGCTCCGACAAGCTAACAGAGATGTTCCGCACCAACGC
GAAAAAGTATCGCGAAGTCATCACCAATGCCATCGAAGCCGACAAGGTGG
TTCGCCAGAAGTTTGAGGCCAACCAGAAGGGCATCCAACTCTTGTCCTTG
CCACCCGATCAAATCCAACAGTCTCTGCCCTCGGCCAGTGGCAGTGTGGA
CCCAAACTGCTCCAGCGTGCAGCGTCTTAAGAAGCTGATGGACGACGTGG
AGACCATTAAGGCGGAGCGTGAGGCCATTGAGTCCGAGCTGAAAGGTGCC
ACTTTCAACATGAAGGACGAGTTTTTGATTGCCCTGCAGAAGGATGGCGC
TATTGACGAGCCCGCCCTCTCGTTGGCGCGTATTGGCCAAGTGCTCAATC
CCCTGCAGCAGCAGGTGCGCGAGAGCGTGGAACGTCAGCAGTCCTTGGTC
AGCGAGATCCAAAGCGCCCATGGTGCCTTTGTCTCTGAAACTGGTAGCTG
CGGCAGCTCGCGGGATACTTTATACCAGGAGCTAGCAACCGCCTTCGATA
GCTACATTGAACTTTCTGGAAATCTGCAGGAGGGCACCAAGTTCTACAAC
GACCTCACGCAGTTGCTGGTTGTGTTCCAGAACAAGATCAGCGACTTTGT
GTTCGCCCGCAAGACAGAGAAGGAGGAGCTGCTCAAGGACTTGACCACAG
AGTCCAGCCGCCAGGCATGTCCGGCCACTCCAGCCCTTCCCTCGCACTAT
GCATCCACATCGGGCAGTGGCAGCGATATTCCACCTGGCTCCGCACCTAG
TGTGCCACCTGCCGCATCAACGGCCAACATTCCGTATCCGGCCCAAGTGC
AAGGCATGCCTATTCCATATGGAGCCCAGCCAGGTGTGCCCTACCCCGCC
TATGTGCCCGCTCCGATGCCGCAGAGCTTCAATCCATACGCCACCTTGCC
GTATCCTGGTAACTATCAGTACCAGGGATTCCCGCAGGGACCGCCACCCG
GCCACTACGGAACATACCCAGGCAGTTATGCCAACCAGCAGGGTGGATAT
CCCAACCAGAAGCCACCTGGCTGGGCAAGCTTTCTAGACCAT
BO10808.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:12:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ALiX-RA | 2511 | CG12876-PA | 1..2508 | 17..2524 | 12540 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:12:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ALiX-RA | 2892 | CG12876-RA | 132..2639 | 17..2524 | 12540 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:12:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27697135..27698731 | 2225..629 | 7985 | 100 | Minus |
| 3R | 32079331 | 3R | 27699086..27699367 | 629..348 | 1410 | 100 | Minus |
| 3R | 32079331 | 3R | 27699768..27699979 | 228..17 | 1060 | 100 | Minus |
| 3R | 32079331 | 3R | 27696889..27697075 | 2411..2225 | 935 | 100 | Minus |
| 3R | 32079331 | 3R | 27699435..27699553 | 347..229 | 595 | 100 | Minus |
| 3R | 32079331 | 3R | 27696719..27696831 | 2524..2412 | 565 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:12:19 has no hits.
BO10808.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:56:46 Download gff for
BO10808.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ALiX-RA | 1..2511 | 17..2528 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:13:59 Download gff for
BO10808.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ALiX-RA | 267..2777 | 17..2528 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:27:44 Download gff for
BO10808.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ALiX-RA | 132..2639 | 17..2526 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:56:46 Download gff for
BO10808.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ALiX-RA | 267..2777 | 17..2528 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:13:13 Download gff for
BO10808.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ALiX-RA | 132..2639 | 17..2526 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:13:13 Download gff for
BO10808.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27699768..27699979 | 17..228 | 100 | | Minus |
| 3R | 27696717..27696831 | 2412..2526 | 98 | <- | Minus |
| 3R | 27696889..27697074 | 2226..2411 | 100 | <- | Minus |
| 3R | 27697135..27698730 | 630..2225 | 100 | <- | Minus |
| 3R | 27699086..27699367 | 348..629 | 100 | <- | Minus |
| 3R | 27699435..27699553 | 229..347 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:27:44 Download gff for
BO10808.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23522611..23522796 | 2226..2411 | 100 | <- | Minus |
| arm_3R | 23522439..23522553 | 2412..2526 | 98 | <- | Minus |
| arm_3R | 23522857..23524452 | 630..2225 | 100 | <- | Minus |
| arm_3R | 23524808..23525089 | 348..629 | 100 | <- | Minus |
| arm_3R | 23525157..23525275 | 229..347 | 100 | <- | Minus |
| arm_3R | 23525490..23525701 | 17..228 | 100 | | Minus |
BO10808.pep Sequence
Translation from 16 to 2542
> BO10808.pep
MSKFLGVPLKKPSEVDVIKPLNNLIQSTYNGASEEEKGKYGEAVNEFSKQ
RNTAIWKFFEKYEASLEIVYAYYDQICALETKISVSELQIPFKWKDAFDK
GSIFGGKISLTHTSLLYEKVCVLFNIAALQSNIAANQSLDSDDGLKLTIK
LLQQSAGIFQYLKGATPAAVPSEPTPDLSQDTLTVLQALMVAQAQEVFIL
KAIKDNLKDQIIAKLCCQAEESYADVLRAMQKESVRSLWEKEWIPTIAGK
QAGFHALTQLYQSLVCRAAKKIGEEIARLRNAIDLFKAAQTRSGNETYLD
EYFSRAKRNLTESTKDNEFIYNEIIPELSTLTSPGKAQLAKPLPIAVPLA
ENFKDIFSSLVPVELHRALTASDMRRNEIVNVEIMKLREATQTLNAVLAS
LNLPAAVETADGNSGLPPSLKEKANEVRQKGGIENVQTMLKDLPELLNRN
REILDETERLLDEERDSDNQLRAQFKDRWTRISSDKLTEMFRTNAKKYRE
VITNAIEADKVVRQKFEANQKGIQLLSLPPDQIQQSLPSASGSVDPNCSS
VQRLKKLMDDVETIKAEREAIESELKGATFNMKDEFLIALQKDGAIDEPA
LSLARIGQVLNPLQQQVRESVERQQSLVSEIQSAHGAFVSETGSCGSSRD
TLYQELATAFDSYIELSGNLQEGTKFYNDLTQLLVVFQNKISDFVFARKT
EKEELLKDLTTESSRQACPATPALPSHYASTSGSGSDIPPGSAPSVPPAA
STANIPYPAQVQGMPIPYGAQPGVPYPAYVPAPMPQSFNPYATLPYPGNY
QYQGFPQGPPPGHYGTYPGSYANQQGGYPNQKPPGWASFLDH
BO10808.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:35:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ALiX-PA | 836 | CG12876-PA | 1..836 | 1..836 | 4267 | 100 | Plus |
| mop-PA | 1833 | CG9311-PA | 14..808 | 9..830 | 389 | 24.4 | Plus |
| Rhp-PA | 718 | CG8497-PA | 127..392 | 9..296 | 164 | 21.5 | Plus |
| Rhp-PB | 718 | CG8497-PB | 127..392 | 9..296 | 164 | 21.5 | Plus |
