Clone BO10810 Report

Search the DGRC for BO10810

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:108
Well:10
Vector:pDNR-Dual
Associated Gene/Transcript
Protein status:BO10810.pep: validated full length
Sequenced Size:334

Clone Sequence Records

BO10810.3prime Sequence

332 bp (331 high quality bases) assembled on 2006-04-19

> BO10810.3prime
ATGGTCTAGAAAGCTTGCACTGGAGAGTTTCAAACTCATCCCACTCACCT
CTCTATTCTCAAACTTAATTAAAAACCCTCGCCTCGCCGAATCAGAAATG
TTCAAAAAGTGCTCGAAAAAGTGTACACATAAAAATGCTAATAAATGCGT
CGCGGTGCTCCTGCTATCCTGCCATCTTGCCATCGTGCAATCCTGCCATC
CTGCCATCCTGCCATCGTACCAACCTGAAATCCCAGTTGTAGAATCGGGA
ACTCCGGCTGGTTGCCACATGCATTTCCCCCAATTTGGTGCCACTTTCCA
ATTGCAATCCTTGGCCATGTCGACTGATAACT

BO10810.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:10:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG32827-PA 303 CG32827-RA 1..300 318..19 1500 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-12 18:52:11 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:52:07
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19413051..19413351 319..19 1505 100 Minus
Blast to na_te.dros performed on 2015-02-12 18:52:09 has no hits.

BO10810.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:49:52 Download gff for BO10810.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32827-PA 1..303 16..318 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:07:09 Download gff for BO10810.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32827-PA 1..303 16..318 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:26:28 Download gff for BO10810.3prime
Subject Subject Range Query Range Percent Splice Strand
X 19413051..19413358 11..319 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:26:28 Download gff for BO10810.3prime
Subject Subject Range Query Range Percent Splice Strand
X 19413051..19413358 11..319 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:15:10 Download gff for BO10810.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19307084..19307391 11..319 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:15:10 Download gff for BO10810.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19307084..19307391 11..319 98   Minus

BO10810.5prime Sequence

332 bp (331 high quality bases) assembled on 2006-04-19

> BO10810.5prime
GAAGTTATCAGTCGACATGGCCAAGGATTGCAATTGGAAAGTGGCACCAA
ATTGGGGGAAATGCATGTGGCAACCAGCCGGAGTTCCCGATTCTACAACT
GGGATTTCAGGTTGGTACGATGGCAGGATGGCAGGATGGCAGGATTGCAC
GATGGCAAGATGGCAGGATAGCAGGAGCACCGCGACGCATTTATTAGCAT
TTTTATGTGTACACTTTTTCGAGCACTTTTTGAACATTTCTGATTCGGCG
AGGCGAGGGTTTTTAATTAAGTTTGAGAATAGAGAGGTGAGTGGGATGAG
TTTGAAACTCTCCAGTGCAAGCTTTCTAGACC

BO10810.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:10:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG32827-PA 303 CG32827-RA 1..300 17..316 1500 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-04 10:37:32 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 10:37:24
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19413051..19413351 16..316 1505 100 Plus
Blast to na_te.dros performed on 2015-02-04 10:37:28 has no hits.

BO10810.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:49:53 Download gff for BO10810.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32827-PA 1..303 17..319 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:07:10 Download gff for BO10810.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32827-PA 1..303 17..319 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 12:38:24 Download gff for BO10810.5prime
Subject Subject Range Query Range Percent Splice Strand
X 19413051..19413358 16..324 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 12:38:24 Download gff for BO10810.5prime
Subject Subject Range Query Range Percent Splice Strand
X 19413051..19413358 16..324 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 11:27:17 Download gff for BO10810.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19307084..19307391 16..324 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 11:27:17 Download gff for BO10810.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19307084..19307391 16..324 98   Plus

BO10810.complete Sequence

334 bp (334 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ631881

> BO10810.complete
GAAGTTATCAGTCGACATGGCCAAGGATTGCAATTGGAAAGTGGCACCAA
ATTGGGGGAAATGCATGTGGCAACCAGCCGGAGTTCCCGATTCTACAACT
GGGATTTCAGGTTGGTACGATGGCAGGATGGCAGGATGGCAGGATTGCAC
GATGGCAAGATGGCAGGATAGCAGGAGCACCGCGACGCATTTATTAGCAT
TTTTATGTGTACACTTTTTCGAGCACTTTTTGAACATTTCTGATTCGGCG
AGGCGAGGGTTTTTAATTAAGTTTGAGAATAGAGAGGTGAGTGGGATGAG
TTTGAAACTCTCCAGTGCAAGCTTTCTAGACCAT

BO10810.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed on 2014-11-28 00:33:34 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed on 2014-11-28 00:33:36 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:33:32
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19413051..19413351 16..316 1505 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:33:33 has no hits.

BO10810.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed on 2008-07-21 22:48:51 has no hits.
Sim4 to dmel-all-transcript-r5.9.fasta performed on 2008-07-21 22:48:51 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:22:36 Download gff for BO10810.complete
Subject Subject Range Query Range Percent Splice Strand
X 19413052..19413351 17..318 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:22:36 Download gff for BO10810.complete
Subject Subject Range Query Range Percent Splice Strand
X 19413052..19413351 17..318 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:54:39 Download gff for BO10810.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 19307085..19307384 17..318 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:54:39 Download gff for BO10810.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 19307085..19307384 17..318 99   Plus

BO10810.pep Sequence

Translation from 16 to 334

> BO10810.pep
MAKDCNWKVAPNWGKCMWQPAGVPDSTTGISGWYDGRMAGWQDCTMARWQ
DSRSTATHLLAFLCVHFFEHFLNISDSARRGFLIKFENREVSGMSLKLSS
ASFLDH
Sequence BO10810.pep has no blast hits.