Clone BO10811 Report

Search the DGRC for BO10811

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:108
Well:11
Vector:pDNR-Dual
Associated Gene/TranscriptCG1646-RA
Protein status:BO10811.pep: validated not full length
Sequenced Size:3061

Clone Sequence Records

BO10811.3prime Sequence

917 bp (851 high quality bases) assembled on 2006-04-19

> BO10811.3prime
ATGGTCTAGAAAGCTTGCATAGTAGTTGCCATAACCGCTCCACTGGCCGT
AGTTGTAGCCGCTACCACCACTGTTGGCGCTGGCCCCACCGGAACCGTAG
CCCCACTGATTGTAGTAAGAGTCGTAGGACGCCTGTTGTGGCGTCTGTGA
GGGATAGGCTGCTGCGGTATTCTGCTGACCATAGTATGGATTTGCTGCTC
CATAGTTGTAGCCTGCGACTGCTGCGGCCGAGCCACCATTGTTGTAAGCT
GCCGCCGCGGATCCTGTGGGGACAGGACCTTCTTTGCTGCTTGATGAGTT
TTTGCGACTAGGACTGCCATCACTTTTCTTTTGCGCTTCCTTGGCTTTAG
TGAGTGCCTGCTGCAGAGCGCGCTGTGCGTCTTGTAGACCCCTGGCCGTG
CTGCCGAAATCCTCAAGGAACTCCACTTTGCGCTGGGCAAACAAAACCTT
CTGATCGGGTTCGATGTCCGCACGAGCCATGAACTTATCCATAATTTCGA
CTACCTCCTGCTCATCGACTTTTGGGCGCTGTAGGCACAAATCGATCATT
TGCAGGGCCACACGAGTGTTGGCTGGATCACGTTCCAGCGCCTGCTGCAG
GGCGGCCAAGCCGGCGTCGAGATCATGACAGATTTTATTGAGGAAACGGG
CATACTTGATGGCCAGACTGCCGGCAATGCCCTTGTTCTTTGTACTCTCT
ATATAGTGCTTGTACAGCTCGCGACACTTGTCCAGTGCTCCTCGACGCCT
TTCCACGTTGATACGACGATAGGAAAGCTGCAGGAGATTGGGGCAGCGCT
GATCGATACGCTGCAAAATTTCAGCGGCGTCGTCAAAGTTCATCTGGCAT
TCCTCGGAAGCGGCCCACATCAGGTGCAGACTCGGTTTGTCCGGATGATG
GATGCGACAGGCGCGGC

BO10811.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:10:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG1646-PB 3201 CG1646-RB 2300..3198 917..19 4445 99.7 Minus
CG1646-PA 3030 CG1646-RA 2129..3027 917..19 4445 99.7 Minus
CG1646-PD 3081 CG1646-RD 2180..3078 917..19 4445 99.7 Minus
CG1646-PC 3030 CG1646-RC 2129..3027 917..19 4445 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:41:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG1646-RE 3582 CG1646-RE 2490..3388 917..19 4465 99.8 Minus
CG1646-RC 3573 CG1646-RC 2481..3379 917..19 4465 99.8 Minus
CG1646-RA 3563 CG1646-RA 2471..3369 917..19 4465 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:41:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 28816204..28816798 917..323 2945 99.7 Minus
3R 32079331 3R 28816855..28817160 324..19 1530 100 Minus
Blast to na_te.dros performed on 2015-02-10 22:41:53 has no hits.

BO10811.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:49:54 Download gff for BO10811.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1646-PD 2180..3081 15..917 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:07:12 Download gff for BO10811.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1646-PC 2129..3030 15..917 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:49:30 Download gff for BO10811.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1646-RA 2471..3375 11..917 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:01:44 Download gff for BO10811.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1646-RA 2471..3375 11..917 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:01:44 Download gff for BO10811.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 28816204..28816798 323..917 99 -> Minus
3R 28816857..28817166 11..322 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:49:30 Download gff for BO10811.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24641926..24642520 323..917 99 -> Minus
arm_3R 24642579..24642888 11..322 99   Minus

BO10811.5prime Sequence

811 bp (800 high quality bases) assembled on 2006-04-19

> BO10811.5prime
GAAGTTATCAGTCGACATGGTTCAGGAAGAGGAGGAGCCCTTTAGAGGGA
CAAACACTGCGGAGGCACCTGCTTTGGAGCCCCAATTCGAGGAGACTCAG
CACCAGATAGAGGATGACGTGGAAATGCTGCCAGCCGAAGCTGCTGGGGT
TGATGAAAAGAGCTCTTCCTTCCCGTTTGGCACGGTGGCGGAGCTGCATT
CAGAGACTAGTGATGATATTAAAGAGACACGCGGTCAGGCTGGCGTGGAC
ACCCTACTGGCTTCTTTAGCCGGCGATAATGCCAACAGCCTGCCCTCCGT
GGGTGGAAATGACGAGAGTGACAATGTCAAGAAGGCGGACTTTGAGTACA
ATGTAGACTCCCTGCAGCCGCAGATGGAGAAAATGAATTCCTCTGAGGAC
TCCAGCTCACAACATGCCATTGCCGAGGATCTGGCCGATGCGGACACCAG
CAATGCAACCATTGTCAACACAGAGATAGTCTCCGAGGATGAGCTACCTC
TGCCCAGCAAGCCTGAAATAAATGATGCCGAGGAAGTTTCCGATGAAGAG
CTTCCAGCACCGCAGCGGGCTGAATTGCCAGAGGATGCTGAAGTAATCTC
GGAGGATGAACTGCCCGCCAGTAATAACAATAACACCGCCACTGAGCCCA
AGGCACCTTTGAAGCGCAAGGCGGAAAACGAAAGCGTTAAGAGCACCGAA
GATAAGGATGCAAGCAGTCATGAATCAAGCACAAAGGATAAATCCTCCGA
GCAATATAATCCGGGCAGTCCCACATCTGAGAGCAACGACGCACAGCCCT
CAGAGAAAAAA

BO10811.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:10:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG1646-PB 3201 CG1646-RB 171..966 16..811 3980 100 Plus
CG1646-PA 3030 CG1646-RA 1..795 17..811 3975 100 Plus
CG1646-PC 3030 CG1646-RC 1..795 17..811 3975 100 Plus
CG1646-PD 3081 CG1646-RD 274..846 239..811 2865 100 Plus
CG1646-PD 3081 CG1646-RD 171..274 16..119 520 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:49:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG1646-RH 4604 CG1646-RH 184..979 16..811 3980 100 Plus
CG1646-RE 3582 CG1646-RE 361..1156 16..811 3980 100 Plus
CG1646-RC 3573 CG1646-RC 352..1147 16..811 3980 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:49:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 28812743..28813538 16..811 3980 100 Plus
Blast to na_te.dros performed on 2015-02-10 23:49:20 has no hits.

BO10811.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:49:55 Download gff for BO10811.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1646-PB 165..960 10..805 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:07:13 Download gff for BO10811.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1646-PB 165..960 10..805 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:28:30 Download gff for BO10811.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1646-RC 346..1141 10..805 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:13:35 Download gff for BO10811.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1646-RC 346..1141 10..805 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:13:35 Download gff for BO10811.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 28812739..28813532 11..805 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:28:30 Download gff for BO10811.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24638461..24639254 11..805 99   Plus

BO10811.complete Sequence

3061 bp (3061 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ631882

> BO10811.complete
GAAGTTATCAGTCGACATGGTTCAGGAAGAGGAGGAGCCCTTTAGAGGGA
CAAACACTGCGGAGGCACCTGCTTTGGAGCCCCAATTCGAGGAGACTCAG
CACCAGATAGAGGATGACGTGGAAATGCTGCCAGCCGAAGCTGCTGGGGT
TGATGAAAAGAGCTCTTCCTTCCCGTTTGGCACGGTGGCGGAGCTGCATT
CAGAGACTAGTGATGATATTAAAGAGACACGCGGTCAGGCTGGCGTGGAC
ACCCTACTGGCTTCTTTAGCCGGCGATAATGCCAACAGCCTGCCCTCCGT
GGGTGGAAATGACGAGAGTGACAATGTCAAGAAGGCGGACTTTGAGTACA
ATGTAGACTCCCTGCAGCCGCAGATGGAGAAAATGAATTCCTCTGAGGAC
TCCAGCTCACAACATGCCATTGCCGAGGATCTGGCCGATGCGGACACCAG
CAATGCAACCATTGTCAACACAGAGATAGTCTCCGAGGATGAGCTACCTC
TGCCCAGCAAGCCTGAAATAAATGATGCCGAGGAAGTTTCCGATGAAGAG
CTTCCAGCACCGCAGCGGGCTGAATTGCCAGAGGATGCTGAAGTAATCTC
GGAGGATGAACTGCCCGCCAGTAATAACAATAACACCGCCACTGAGCCCA
AGGCACCTTTGAAGCGCAAGGCGGAAAACGAAAGCGTTAAGAGCACCGAA
GATAAGGATGCAAGCAGTCATGAATCAAGCACAAAGGATAAATCCTCCGA
GCAATATAATCCGGGCAGTCCCACATCTGAGAGCAACGACGCACAGCCCT
CAGAGAAAAAACTCAAGGTCGAAGAATCGGAGCCCAAGGAGAAAAAGAAG
GAAAAGGAGCGCGATAAAGATAAGGAGAAGGATAAGGACAAAGATAATAA
TAAGGATAAGGAAAAGGAGCGAAAGAAGCTGCCGGACCTAGATAAGTACT
GGAGAGCTGTCAAAGAAGACTCCACCGACTTCACCGGCTGGACGTACTTG
CTGCAATATGTTGACAATGAGTCTGATGCGGAGGCGGCGCGCGAGGCCTA
CGACACATTCCTGTCCCACTATCCTTACTGCTACGGATATTGGCGCAAGT
ATGCCGACTACGAGAAGCGCAAGGGCATCAAGGCAAACTGCTATAAGGTG
TTTGAGCGCGGACTGGAGGCGATTCCGCTGTCCGTGGATCTGTGGATCCA
CTACCTAATGCACGTTAAGTCCAATCACGGAGATGATGAAACATTCGTCC
GCTCCCAGTATGAAAGGGCAGTGAAGGCGTGCGGCCTGGAATTTCGATCG
GACAAACTCTGGGATGCCTACATTCGTTGGGAGAACGAGTCAAAGCGGTA
CCACCGTGTGGTCCAGATCTACGATAGACTTCTGGCCATACCGACACAGG
GCTATAATGGTCACTTCGACAATTTCCAAGATTTGATCAATCAGCATGAT
GTAACTATCACACTTGCAAACGAGGAGGTGATCCGTCTGCGCAAAGACTT
CCACGAACGTCAGCAGAGCAAGTCCTCCAAGTCCTCGTCGAAGCATCGCC
GGGACAGCAGCAGCAGCTCCAAGGACAAAGACTCAAAGGAGCGAGAACGT
GAGAAGGACAAGGATAAGGACAAAGACAAGGACAAGGAGAAGCGAGAAAC
TGTCGGGGGCGGTGTTGGTAAGTCGCCAAAAGATACAAGTGAAACTCAAG
TCGATGAATCAGATAGTACTACCGATCTGACCACCGAAAGCGAGTCATCG
CATGCAGCTTCAAAGCCGGCAATGCAGATCGATTTCAGTGATCTTAGCAC
TCTGAATGACGAAGAGGTGGTCAGCATTAGGGACAGGGCTATCTCGGCGC
GGCGCAAAGTCCACAAGTTGACCGTTAGCGCAGTGACAGCCCGCTGGTCC
TTCGAGGAGGGCATCAAGCGGCCTTATTTCCATGTGAAGCCACTCGAGAG
GGCACAGCTCAAGAATTGGAAGGACTACTTGGATTTCGAGATCGAAAAGG
GTGATCGCGAGCGAGTCCTGGTTTTGTTCGAAAGGTGCCTAATCGCCTGT
GCTTTGTATGACGAGTTCTGGCTGAAGATGCTTCGTTATTTAGAGTCTTT
GGAGGATCAGAGCGGAGTTGTGGATCTGGTACGTGATGTTTACCGCCGCG
CCTGTCGCATCCATCATCCGGACAAACCGAGTCTGCACCTGATGTGGGCC
GCCTTCGAGGAATGCCAGATGAACTTTGACGACGCCGCTGAAATTTTGCA
GCGTATCGATCAGCGCTGCCCCAATCTCCTGCAGCTTTCCTATCGTCGTA
TCAACGTGGAAAGGCGTCGAGGAGCACTGGACAAGTGTCGCGAGCTGTAC
AAGCACTATATAGAGAGTACAAAGAACAAGGGCATTGCCGGCAGTCTGGC
CATCAAGTATGCCCGTTTCCTCAATAAAATCTGTCATGATCTCGACGCCG
GCTTGGCCGCCCTGCAGCAGGCGCTGGAACGTGATCCAGCCAACACTCGT
GTGGCCCTGCAAATGATCGATTTGTGCCTACAGCGCCCAAAAGTCGATGA
GCAGGAGGTAGTCGAAATTATGGATAAGTTCATGGCTCGTGCGGACATCG
AACCCGATCAGAAGGTTTTGTTTGCCCAGCGCAAAGTGGAGTTCCTTGAG
GATTTCGGCAGCACGGCCAGGGGTCTACAAGACGCACAGCGCGCTCTGCA
GCAGGCACTCACTAAAGCCAAGGAAGCGCAAAAGAAAAGTGATGGCAGTC
CTAGTCGCAAAAACTCATCAAGCAGCAAAGAAGGTCCTGTCCCCACAGGA
TCCGCGGCGGCAGCTTACAACAATGGTGGCTCGGCCGCAGCAGTCGCAGG
CTACAACTATGGAGCAGCAAATCCATACTATGGTCAGCAGAATACCGCAG
CAGCCTATCCCTCACAGACGCCACAACAGGCGTCCTACGACTCTTACTAC
AATCAGTGGGGCTACGGTTCCGGTGGGGCCAGCGCCAACAGTGGTGGTAG
CGGCTACAACTACGGCCAGTGGAGCGGTTATGGCAACTACTATGCAAGCT
TTCTAGACCAT

BO10811.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:01:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG1646-RB 3201 CG1646-PB 171..3198 16..3043 15140 100 Plus
CG1646-RE 3030 CG1646-PE 1..3027 17..3043 15135 100 Plus
CG1646-RC 3030 CG1646-PC 1..3027 17..3043 15135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:01:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG1646-RE 3582 CG1646-RE 361..3388 16..3043 15140 100 Plus
CG1646-RC 3573 CG1646-RC 352..3379 16..3043 15140 100 Plus
CG1646-RA 3563 CG1646-RA 342..3369 16..3043 15140 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:01:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 28815482..28816798 1423..2739 6585 100 Plus
3R 32079331 3R 28812743..28813551 16..824 4045 100 Plus
3R 32079331 3R 28816855..28817160 2738..3043 1530 100 Plus
3R 32079331 3R 28815146..28815422 1146..1422 1385 100 Plus
3R 32079331 3R 28813616..28813814 823..1021 995 100 Plus
3R 32079331 3R 28813879..28814009 1020..1150 655 100 Plus
Blast to na_te.dros performed on 2014-11-27 01:01:11 has no hits.

BO10811.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:56:47 Download gff for BO10811.complete
Subject Subject Range Query Range Percent Splice Strand
CG1646-RB 165..3201 10..3047 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:14:01 Download gff for BO10811.complete
Subject Subject Range Query Range Percent Splice Strand
CG1646-RC 333..3372 10..3051 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:42:21 Download gff for BO10811.complete
Subject Subject Range Query Range Percent Splice Strand
CG1646-RA 343..3369 17..3045 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:56:47 Download gff for BO10811.complete
Subject Subject Range Query Range Percent Splice Strand
CG1646-RC 333..3372 10..3051 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:16:28 Download gff for BO10811.complete
Subject Subject Range Query Range Percent Splice Strand
CG1646-RA 343..3369 17..3045 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:16:28 Download gff for BO10811.complete
Subject Subject Range Query Range Percent Splice Strand
3R 28812744..28813551 17..824 100 -> Plus
3R 28813618..28813814 825..1021 100 -> Plus
3R 28813881..28814006 1022..1147 100 -> Plus
3R 28815148..28815422 1148..1422 100 -> Plus
3R 28815482..28816798 1423..2739 100 -> Plus
3R 28816857..28817160 2740..3045 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:42:21 Download gff for BO10811.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24639340..24639536 825..1021 100 -> Plus
arm_3R 24639603..24639728 1022..1147 100 -> Plus
arm_3R 24640870..24641144 1148..1422 100 -> Plus
arm_3R 24638466..24639273 17..824 100 -> Plus
arm_3R 24641204..24642520 1423..2739 100 -> Plus
arm_3R 24642579..24642882 2740..3045 99   Plus

BO10811.pep Sequence

Translation from 16 to 3061

> BO10811.pep
MVQEEEEPFRGTNTAEAPALEPQFEETQHQIEDDVEMLPAEAAGVDEKSS
SFPFGTVAELHSETSDDIKETRGQAGVDTLLASLAGDNANSLPSVGGNDE
SDNVKKADFEYNVDSLQPQMEKMNSSEDSSSQHAIAEDLADADTSNATIV
NTEIVSEDELPLPSKPEINDAEEVSDEELPAPQRAELPEDAEVISEDELP
ASNNNNTATEPKAPLKRKAENESVKSTEDKDASSHESSTKDKSSEQYNPG
SPTSESNDAQPSEKKLKVEESEPKEKKKEKERDKDKEKDKDKDNNKDKEK
ERKKLPDLDKYWRAVKEDSTDFTGWTYLLQYVDNESDAEAAREAYDTFLS
HYPYCYGYWRKYADYEKRKGIKANCYKVFERGLEAIPLSVDLWIHYLMHV
KSNHGDDETFVRSQYERAVKACGLEFRSDKLWDAYIRWENESKRYHRVVQ
IYDRLLAIPTQGYNGHFDNFQDLINQHDVTITLANEEVIRLRKDFHERQQ
SKSSKSSSKHRRDSSSSSKDKDSKEREREKDKDKDKDKDKEKRETVGGGV
GKSPKDTSETQVDESDSTTDLTTESESSHAASKPAMQIDFSDLSTLNDEE
VVSIRDRAISARRKVHKLTVSAVTARWSFEEGIKRPYFHVKPLERAQLKN
WKDYLDFEIEKGDRERVLVLFERCLIACALYDEFWLKMLRYLESLEDQSG
VVDLVRDVYRRACRIHHPDKPSLHLMWAAFEECQMNFDDAAEILQRIDQR
CPNLLQLSYRRINVERRRGALDKCRELYKHYIESTKNKGIAGSLAIKYAR
FLNKICHDLDAGLAALQQALERDPANTRVALQMIDLCLQRPKVDEQEVVE
IMDKFMARADIEPDQKVLFAQRKVEFLEDFGSTARGLQDAQRALQQALTK
AKEAQKKSDGSPSRKNSSSSKEGPVPTGSAAAAYNNGGSAAAVAGYNYGA
ANPYYGQQNTAAAYPSQTPQQASYDSYYNQWGYGSGGASANSGGSGYNYG
QWSGYGNYYASFLDH

BO10811.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:34:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG1646-PE 1009 CG1646-PE 1..1009 1..1009 5263 100 Plus
CG1646-PC 1009 CG1646-PC 1..1009 1..1009 5263 100 Plus
CG1646-PA 1009 CG1646-PA 1..1009 1..1009 5263 100 Plus
CG1646-PB 1066 CG1646-PB 58..1066 1..1009 5263 100 Plus
CG1646-PH 501 CG1646-PH 58..435 1..378 1962 100 Plus