Clone BO10817 Report

Search the DGRC for BO10817

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:108
Well:17
Vector:pDNR-Dual
Associated Gene/TranscriptCG4849-RA
Protein status:BO10817.pep: validated full length
Sequenced Size:2959

Clone Sequence Records

BO10817.3prime Sequence

932 bp (819 high quality bases) assembled on 2006-04-19

> BO10817.3prime
ATGGTCTAGAAAGCTTGCAAGCGGGTAGTTGATCAGCACATCCTGGCGTG
CCAACTCCAGCAACATAGGATCGTCGAAGAATTTGTTGATGGACACGTCC
TCGGACAGACCCTTCCTGCGACGCGTCTTGATCATAAACTCTCTGGCCAA
ATGGGATGCTTGCTGCGGCTCCAGTGGCCGGATTATGATGCTCTTGTCCA
GGGGATCGCCAGGCACTATCTGCCAGTGATGGAACACCGAAAGGCAGAAG
GCCTGGCCCTGGGTGTGCGTGCGGAGATCCGTCTCAAATCCAAATGAATC
AATGGCGGGTATGAAGGCTTTGATCGTATATATGGGAGAACCCGATACGG
GAGCATCCTGCGTTACGTGGCCTCTGCGCCTGGCCAGCACAGTATAGACA
GCGGATACACAATCTGCCGGCGCCTGAACCTCCACAAATAGATATGGTTC
CATTAAACGTGGGGTGGCCATCAAAAACGCCGAGTATGCCACACGACGGG
CTGTTGGAATGATCTGTCCACCGCCTCGATGCAACGCCTCGTTGGCGATG
ACGCCATCGAGAATCTTAAACTTGACATTACGGATTGGCTCCTCGCACAG
CGGCCCTTCTCGCGTTCCCCATTGGAAGCCCTGCACAATCGAATCCTTAA
CCGCGGTCAGCAGGTTCTTGTCCACTTCCGAGGGCAGGGTGTCGTCGACC
AGGATATTTGGACCCGTGGAGTCGGGACCGAAGGCCCAAATGGAACGCGC
CGCAAGCAGATCCCAATCGTAGTTGACTTGGAAGAACTCGCCGATGCGCT
TTTTGTTCCAGTTTATGCAGACGGTTCCGTTCTCAATGTCCTCGGCCAGT
CCCTTCTCCAGTGGCTCCGAGATCATGGTTATTTTGTTTTTCTTATTCGG
CGTTTCGGCGAAACATTTCAGGGAACTCGTTT

BO10817.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:10:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG4849-PA 2928 CG4849-RA 2012..2925 932..19 4570 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:40:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG4849-RA 3123 CG4849-RA 2159..3072 932..19 4570 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:40:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27965929..27966487 932..374 2795 100 Minus
3R 32079331 3R 27966549..27966907 377..19 1795 100 Minus
Blast to na_te.dros performed on 2015-02-12 10:40:25 has no hits.

BO10817.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:50:08 Download gff for BO10817.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4849-PA 2012..2928 18..932 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:07:29 Download gff for BO10817.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4849-PA 2012..2928 18..932 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 02:02:41 Download gff for BO10817.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4849-RA 2159..3079 11..932 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:20:27 Download gff for BO10817.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4849-RA 2159..3079 11..932 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:20:27 Download gff for BO10817.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 27965929..27966487 374..932 100 -> Minus
3R 27966553..27966914 11..373 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 02:02:41 Download gff for BO10817.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23791651..23792209 374..932 100 -> Minus
arm_3R 23792275..23792636 11..373 98   Minus

BO10817.5prime Sequence

958 bp (864 high quality bases) assembled on 2006-04-19

> BO10817.5prime
GAAGTTATCAGTCGACATGGATTCCGATTTGTACGATGAGTTTGGCAACT
ATATTGGCCCCGATTTAGACAGCGACGAGGAAGATGAGCAAAGTATTTAT
GGGCAACCCGATGTGCAGGATGACCCAGAGGACGCCATGGACGAGGACGA
GGTGGAGCCACAGGAGGACGAGGACAAGGAGGTGACCGCCGTGGTTTTGC
ACGAGGACAAACGCTACTATCCGTCAGCAGTTGAGGTCTACGGCCCGGAT
GTGGAGACCATTGTCCAGGAGGAGGACGCCCAGCCGCTGGACAAGCCGCT
TATAGAGCCAGTGAAGAAGCTCAAGTTCCAGATCAAGGAGCAAGACATGC
AGGAGACCACCTACGACATGGAGTTCATGGCCGATCTCATGGACACTCCG
CCGCTTATTCGCAACGTGGCTTTGGTTGGCCACCTGCACCACGGCAAGAC
CACCTTTGTCGACTGCCTCATCCGGCAGACGCATCCGCAATTTGAGACCA
TGGAGGAGCGCCAGTTGCGCTACACGGACACCCTGTTCACGGAACAGGAA
CGCGGCTGCAGCATCAAGGCCACGCCGGTCACACTTGTCCTGCAGGATGT
CAAACAGAAGAGCTACTTGCTGAACATCTTCGACACCCCGGGGCATGTCA
ACTTCTCGGACGAGGCCACCGCCGCCATGCGAATGAGCGATGGTGTCGTG
CTGTTCATCGATGCCGCCGAGGGCGTCATGCTCAACACGGAGCGACTGCT
CAAGCACGCGGTGCAAGAGCGCCAGGCTATCACCGTTTGCATAAACAAGA
TTGATCGCCTCATCCTGGAGCTGAAATTGCCGCCCCAGGACGCCTACTTT
AAGTTGAAACACATTGTGGAGGAAGTCAATGGGCTGCTGAGCACCTATGG
CGCTCCAGATGACAATCTCTTAGTTTTCGCTATTTTGGGGCACGTGTGCT
TCGCCAGC

BO10817.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:11:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG4849-PA 2928 CG4849-RA 1..910 17..926 4550 100 Plus
CG31054-PA 375 CG31054-RA 1..326 17..342 1630 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:49:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG4849-RA 3123 CG4849-RA 147..1089 16..958 4640 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:49:43
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27963860..27964530 129..799 3355 100 Plus
3R 32079331 3R 27961214..27961427 129..342 1070 100 Plus
3R 32079331 3R 27963687..27963802 16..131 580 100 Plus
3R 32079331 3R 27961041..27961156 16..131 580 100 Plus
3R 32079331 3R 27964587..27964680 798..891 470 100 Plus
3R 32079331 3R 27964738..27964806 890..958 270 92.8 Plus
Blast to na_te.dros performed on 2015-02-11 14:49:44 has no hits.

BO10817.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:50:09 Download gff for BO10817.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4849-PA 1..942 17..958 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:07:30 Download gff for BO10817.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4849-PA 1..942 17..958 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:00:54 Download gff for BO10817.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4849-RA 147..1089 16..958 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:09:00 Download gff for BO10817.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4849-RA 147..1089 16..958 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:09:00 Download gff for BO10817.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 27964740..27964806 892..958 94   Plus
3R 27963862..27964530 131..799 100 -> Plus
3R 27963687..27963801 16..130 100 -> Plus
3R 27964589..27964680 800..891 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:00:54 Download gff for BO10817.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23789409..23789523 16..130 100 -> Plus
arm_3R 23789584..23790252 131..799 100 -> Plus
arm_3R 23790311..23790402 800..891 100 -> Plus
arm_3R 23790462..23790528 892..958 94   Plus

BO10817.complete Sequence

2959 bp (2959 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ631884

> BO10817.complete
GAAGTTATCAGTCGACATGGATTCCGATTTGTACGATGAGTTTGGCAACT
ATATTGGCCCCGATTTAGACAGCGACGAGGAAGATGAGCAAAGTATTTAT
GGGCAACCCGATGTGCAGGATGACCCAGAGGACGCCATGGACGAGGACGA
GGTGGAGCCACAGGAGGACGAGGACAAGGAGGTGACCGCCGTGGTTTTGC
ACGAGGACAAACGCTACTATCCGTCAGCAGTTGAGGTCTACGGCCCGGAT
GTGGAGACCATTGTCCAGGAGGAGGACGCCCAGCCGCTGGACAAGCCGCT
TATAGAGCCAGTGAAGAAGCTCAAGTTCCAGATCAAGGAGCAAGACATGC
AGGAGACCACCTACGACATGGAGTTCATGGCCGATCTCATGGACACTCCG
CCGCTTATTCGCAACGTGGCTTTGGTTGGCCACCTGCACCACGGCAAGAC
CACCTTTGTCGACTGCCTCATCCGGCAGACGCATCCGCAATTTGAGACCA
TGGAGGAGCGCCAGTTGCGCTACACGGACACCCTGTTCACGGAACAGGAA
CGCGGCTGCAGCATCAAGGCCACGCCGGTCACACTTGTCCTGCAGGATGT
CAAACAGAAGAGCTACTTGCTGAACATCTTCGACACCCCGGGGCATGTCA
ACTTCTCGGACGAGGCCACCGCCGCCATGCGAATGAGCGATGGTGTCGTG
CTGTTCATCGATGCCGCCGAGGGCGTCATGCTCAACACGGAGCGACTGCT
CAAGCACGCGGTGCAAGAGCGCCAGGCTATCACCGTTTGCATAAACAAGA
TTGATCGCCTCATCCTGGAGCTGAAATTGCCGCCCCAGGACGCCTACTTT
AAGTTGAAACACATTGTGGAGGAAGTCAATGGGCTGCTGAGCACCTATGG
CGCTCCAGATGACAATCTCTTAGTTTCGCCTATTTTGGGCAACGTGTGCT
TCGCCAGCTCGTTGTACGGATTTTGTTTCACTCTGAAATCCTTTGCCAAG
CTGTATGCAGACACCTATGAGGGAGTGGCTTACCTGGACTTTGCCAAGCG
GCTCTGGGGTGACATGTACTTCAACAGTAAAACGCGCAAGTTCTCGAAGA
AGCAGCCGCACAATTCGGCACAGCGCAGCTTTGTGGAGTTCATTTTGGAG
CCCATGTACAAGCTGATAGCCCAGGTGGTTGGCGATGTGGACACCACTTT
GTCGGACACTCTGGCCGAGCTGAATGTGCGCGTCTCCAAGGAGGAGATGA
AGTCCAATATAAGACCACTGCTGCGTCTCGTCTGTAACCGCTTCATGGGC
GACTGCAGCGGTTTTGTGGATATGTGCGTGGAGCACATTAAATCCCCTTT
GGAAAATGCCAAGCGAAAGGTGGACCATATATACACTGGACCCAAAGAGG
GTGACATTTACCGGGATATGATATCATGCAACCAATACGGCACTCTGATG
GTGCACAGTTCCAAGATGTATCCCAACGACGACTGTACCTTCTTCCAAGT
GCTGGCGAGGATTGTCTCTGGTACTCTACACGCTGGCCAGGAGGTGCGTG
TCCTGGGAGAGAACTACACCTTGCAGGATGAGGAGGACTCTCGCATTCTG
CAAGTCGGTCGTCTGTGGGTATTTGAGTCTCGTTACAAGGTGGAGTTAAA
TCGTGTACCCGCCGGAAATTGGGTGCTCATCGAAGGCATCGATCAGTGTA
TCGTTAAGACCTCCACAATTGTGGATATTAATGTTCCAGAAGACCTCTAC
ATATTCCGACCACTGAAGTTCAACACCCAGAGCATTATCAAGATTGCTGT
GGAGCCAGTGAATCCATCCGAGCTTCCCAAGATGTTGGATGGCCTCCGCA
AGGTGAATAAATCCTATCCACTTCTCTCCACTCGAGTTGAAGAATCCGGC
GAGCATGTTATTCTGGGCACTGGCGAGCTGTACTTGGATTGTGTCATGCA
CGATCTGCGGAAGATGTACTCCGAGATCGACATCAAAGTGGCGGATCCCG
TCGTGGCTTTTTGCGAAACAGTTGTGGAAACGAGTTCCCTGAAATGTTTC
GCCGAAACGCCGAATAAGAAAAACAAAATAACCATGATCTCGGAGCCACT
GGAGAAGGGACTGGCCGAGGACATTGAGAACGGAACCGTCTGCATAAACT
GGAACAAAAAGCGCATCGGCGAGTTCTTCCAAGTCAACTACGATTGGGAT
CTGCTTGCGGCGCGTTCCATTTGGGCCTTCGGTCCCGACTCCACGGGTCC
AAATATCCTGGTCGACGACACCCTGCCCTCGGAAGTGGACAAGAACCTGC
TGACCGCGGTTAAGGATTCGATTGTGCAGGGCTTCCAATGGGGAACGCGA
GAAGGGCCGCTGTGCGAGGAGCCAATCCGTAATGTCAAGTTTAAGATTCT
CGATGGCGTCATCGCCAACGAGGCGTTGCATCGAGGCGGTGGACAGATCA
TTCCAACAGCCCGTCGTGTGGCATACTCGGCGTTTTTGATGGCCACCCCA
CGTTTAATGGAACCATATCTATTTGTGGAGGTTCAGGCGCCGGCAGATTG
TGTATCCGCTGTCTATACTGTGCTGGCCAGGCGCAGAGGCCACGTAACGC
AGGATGCTCCCGTATCGGGTTCTCCCATATATACGATCAAAGCCTTCATA
CCCGCCATTGATTCATTTGGATTTGAGACGGATCTCCGCACGCACACCCA
GGGCCAGGCCTTCTGCCTTTCGGTGTTCCATCACTGGCAGATAGTGCCTG
GCGATCCCCTGGACAAGAGCATCATAATCCGGCCACTGGAGCCGCAGCAA
GCATCCCATTTGGCCAGAGAGTTTATGATCAAGACGCGTCGCAGGAAGGG
TCTGTCCGAGGACGTGTCCATCAACAAATTCTTCGACGATCCTATGTTGC
TGGAGTTGGCACGCCAGGATGTGCTGATCAACTACCCGCTTGCAAGCTTT
CTAGACCAT

BO10817.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:59:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG4849-RA 2928 CG4849-PA 1..2925 17..2941 14625 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:59:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG4849-RA 3123 CG4849-RA 147..3072 16..2941 14630 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:59:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27964985..27966487 1084..2586 7515 100 Plus
3R 32079331 3R 27963860..27964530 129..799 3355 100 Plus
3R 32079331 3R 27966549..27966907 2583..2941 1795 100 Plus
3R 32079331 3R 27961214..27961427 129..342 1070 100 Plus
3R 32079331 3R 27964738..27964932 890..1084 975 100 Plus
3R 32079331 3R 27961041..27961156 16..131 580 100 Plus
3R 32079331 3R 27963687..27963802 16..131 580 100 Plus
3R 32079331 3R 27964587..27964680 798..891 470 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:59:29 has no hits.

BO10817.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:56:50 Download gff for BO10817.complete
Subject Subject Range Query Range Percent Splice Strand
CG4849-RA 1..2928 17..2942 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:14:05 Download gff for BO10817.complete
Subject Subject Range Query Range Percent Splice Strand
CG4849-RA 146..3078 16..2949 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:14:11 Download gff for BO10817.complete
Subject Subject Range Query Range Percent Splice Strand
CG4849-RA 148..3072 17..2943 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:56:50 Download gff for BO10817.complete
Subject Subject Range Query Range Percent Splice Strand
CG4849-RA 146..3078 16..2949 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:32:29 Download gff for BO10817.complete
Subject Subject Range Query Range Percent Splice Strand
CG4849-RA 148..3072 17..2943 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:32:29 Download gff for BO10817.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27963688..27963801 17..130 100 -> Plus
3R 27963862..27964530 131..799 100 -> Plus
3R 27964589..27964680 800..891 100 -> Plus
3R 27964740..27964931 892..1083 100 -> Plus
3R 27964985..27966487 1084..2586 100 -> Plus
3R 27966553..27966907 2587..2943 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:14:11 Download gff for BO10817.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23790462..23790653 892..1083 100 -> Plus
arm_3R 23790311..23790402 800..891 100 -> Plus
arm_3R 23789410..23789523 17..130 100 -> Plus
arm_3R 23789584..23790252 131..799 100 -> Plus
arm_3R 23790707..23792209 1084..2586 100 -> Plus
arm_3R 23792275..23792629 2587..2943 99   Plus

BO10817.pep Sequence

Translation from 16 to 2959

> BO10817.pep
MDSDLYDEFGNYIGPDLDSDEEDEQSIYGQPDVQDDPEDAMDEDEVEPQE
DEDKEVTAVVLHEDKRYYPSAVEVYGPDVETIVQEEDAQPLDKPLIEPVK
KLKFQIKEQDMQETTYDMEFMADLMDTPPLIRNVALVGHLHHGKTTFVDC
LIRQTHPQFETMEERQLRYTDTLFTEQERGCSIKATPVTLVLQDVKQKSY
LLNIFDTPGHVNFSDEATAAMRMSDGVVLFIDAAEGVMLNTERLLKHAVQ
ERQAITVCINKIDRLILELKLPPQDAYFKLKHIVEEVNGLLSTYGAPDDN
LLVSPILGNVCFASSLYGFCFTLKSFAKLYADTYEGVAYLDFAKRLWGDM
YFNSKTRKFSKKQPHNSAQRSFVEFILEPMYKLIAQVVGDVDTTLSDTLA
ELNVRVSKEEMKSNIRPLLRLVCNRFMGDCSGFVDMCVEHIKSPLENAKR
KVDHIYTGPKEGDIYRDMISCNQYGTLMVHSSKMYPNDDCTFFQVLARIV
SGTLHAGQEVRVLGENYTLQDEEDSRILQVGRLWVFESRYKVELNRVPAG
NWVLIEGIDQCIVKTSTIVDINVPEDLYIFRPLKFNTQSIIKIAVEPVNP
SELPKMLDGLRKVNKSYPLLSTRVEESGEHVILGTGELYLDCVMHDLRKM
YSEIDIKVADPVVAFCETVVETSSLKCFAETPNKKNKITMISEPLEKGLA
EDIENGTVCINWNKKRIGEFFQVNYDWDLLAARSIWAFGPDSTGPNILVD
DTLPSEVDKNLLTAVKDSIVQGFQWGTREGPLCEEPIRNVKFKILDGVIA
NEALHRGGGQIIPTARRVAYSAFLMATPRLMEPYLFVEVQAPADCVSAVY
TVLARRRGHVTQDAPVSGSPIYTIKAFIPAIDSFGFETDLRTHTQGQAFC
LSVFHHWQIVPGDPLDKSIIIRPLEPQQASHLAREFMIKTRRRKGLSEDV
SINKFFDDPMLLELARQDVLINYPLASFLDH

BO10817.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:35:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG4849-PA 975 CG4849-PA 1..975 1..975 5093 100 Plus
EF2-PD 844 CG2238-PD 4..842 116..957 1528 36.8 Plus
EF2-PC 844 CG2238-PC 4..842 116..957 1528 36.8 Plus
EF2-PA 844 CG2238-PA 4..842 116..957 1528 36.8 Plus
CG33158-PB 1033 CG33158-PB 427..1019 439..952 477 25.9 Plus