Clone Sequence Records
BO10824.3prime Sequence
881 bp (855 high quality bases) assembled on 2006-04-19
> BO10824.3prime
ATGGTCTAGAAAGCTTGCTTCTCCGTTTGAGGCATGCTGCTGCAGGGTTA
GGATCAGCTGCTCCTTCTGCTCGACGATGCCACGCCAGTGCTCGTCCTGC
TCACGAGCACGCTCTTCCAAGTCCATCAATGTGTTTGTCGTCTTGGTGAC
CAGCTGGGTGAGCTTGTCGTTGCACTCCCGCAGCTGCAGGTTCTGTTTGT
GCAGCTCCTGCTGCTCGGCGGCGGAGGAGGATTGGCTATTCGAACTACTA
TTATTGCTACTAATATTGTTGTGGGTGCTATTGTGGTTGCTACTGCTACT
GTTGCTTGATTGTGTGGACTTATGACTACTGCTGCTCTGCTTCTCGGACT
TCTCCGCGTCGAGCTTCTGCCGCAGCTTATCCTGTTGCTGCTTGACATGG
GTGGCCAGGACCTGTTCCAGCCACTGGTCAAAGGATGCTTGCAGGGCATT
TCCCGACTGCGCTTTCACAGCGTCGGGATAAAGGCGCTGGTAGAGATCCC
GGATCCTCTGCTGCTCGCTCTTGGCTGAACTGGCACTACCCCCGCCATTG
GCGGCCACTGCCTTCTGTTGCTGCAGCTGCAGCTCTTTGTGTTGTTGGCC
TACGGACTGCGCTGAATTTGTTTTCGTCTTAGCTGTTAATGCTTCGGCAT
TTTGCAACGCTTCAATCAACTTCCAATTTTTCATACGCACGTCATTATTT
TTCTCCCGCTGCTCCTGGAGCTCCTGTTGCAGATGTTGCTCCTTAGCCTG
CAGCTGCTCGGCCCGCTGTTGAGCCTCCTGGAGCTGCGACTGCAGAGCGT
TGGCTTGCTTCTGCTGCTGGGCGTGGGCATCCGTCAGCGAGCCGACCTGC
GAGCGAAGAGCACTCAGCTCCTGCTGCTTCT
BO10824.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:11:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18212-PG | 2625 | CG18212-RG | 1760..2622 | 881..19 | 4315 | 100 | Minus |
CG18212-PF | 2529 | CG18212-RF | 1948..2526 | 597..19 | 2895 | 100 | Minus |
CG18212-PE | 2529 | CG18212-RE | 1948..2526 | 597..19 | 2895 | 100 | Minus |
CG18212-PA | 2529 | CG18212-RA | 1948..2526 | 597..19 | 2895 | 100 | Minus |
CG18212-PD | 2529 | CG18212-RD | 1948..2526 | 597..19 | 2895 | 100 | Minus |
CG18212-PB | 2529 | CG18212-RB | 1948..2526 | 597..19 | 2895 | 100 | Minus |
CG18212-PF | 2529 | CG18212-RF | 1760..1947 | 881..694 | 940 | 100 | Minus |
CG18212-PE | 2529 | CG18212-RE | 1760..1947 | 881..694 | 940 | 100 | Minus |
CG18212-PA | 2529 | CG18212-RA | 1760..1947 | 881..694 | 940 | 100 | Minus |
CG18212-PD | 2529 | CG18212-RD | 1760..1947 | 881..694 | 940 | 100 | Minus |
CG18212-PB | 2529 | CG18212-RB | 1760..1947 | 881..694 | 940 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:37:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
alt-RI | 3834 | CG18212-RI | 1877..2739 | 881..19 | 4315 | 100 | Minus |
alt-RG | 3470 | CG18212-RG | 1967..2829 | 881..19 | 4315 | 100 | Minus |
alt-RH | 3909 | CG18212-RH | 2236..2814 | 597..19 | 2895 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:37:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17675075..17675533 | 139..597 | 2295 | 100 | Plus |
3R | 32079331 | 3R | 17676086..17676274 | 693..881 | 945 | 100 | Plus |
3R | 32079331 | 3R | 17674892..17675012 | 19..139 | 605 | 100 | Plus |
3R | 32079331 | 3R | 17675642..17675737 | 598..693 | 480 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 11:37:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
roo | 9092 | roo DM_ROO 9092bp | 1054..1164 | 826..719 | 178 | 64.9 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 1065..1152 | 336..249 | 143 | 62.5 | Minus |
BO10824.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:50:18 Download gff for
BO10824.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18212-PG | 1760..2625 | 18..881 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:07:44 Download gff for
BO10824.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18212-PG | 1760..2625 | 18..881 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:29:38 Download gff for
BO10824.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alt-RG | 1967..2829 | 19..881 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:56:26 Download gff for
BO10824.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alt-RG | 1967..2829 | 19..881 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:56:26 Download gff for
BO10824.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17676087..17676274 | 694..881 | 100 | | Plus |
3R | 17674892..17675011 | 19..138 | 100 | <- | Plus |
3R | 17675075..17675533 | 139..597 | 100 | <- | Plus |
3R | 17675642..17675737 | 598..693 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:29:38 Download gff for
BO10824.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13501364..13501459 | 598..693 | 100 | <- | Plus |
arm_3R | 13500614..13500733 | 19..138 | 100 | <- | Plus |
arm_3R | 13500797..13501255 | 139..597 | 100 | <- | Plus |
arm_3R | 13501809..13501996 | 694..881 | 100 | | Plus |
BO10824.5prime Sequence
910 bp (807 high quality bases) assembled on 2006-04-19
> BO10824.5prime
GAAGTTATCAGTCGACATGGACTTCCACATACTGATCGTCATCGGTTGTG
TGGTCAGCGCCTCGCTGCTCTCGTTCCTGTTCATCAACAAGATCTTCCGG
CGCAAGACTTTTGAGGAGGTGGTAGCCGAGAAGCGTGCCCTGAGCGCCAA
TCTCTACAAGGCGGCCGGTGGTGCCGCTACCAAGAAGCCCAAGAAGAAGG
AACTTAAGCGCGAAAAGAAGCAACGTCAGCGGGAACAGCAGAGGGATGTG
AACAACGAGCCGGAACCAGAGGAAGCCGAAGACTACTCCGATGGTCAGTC
GGAGGGTCAGGGCTCCGTGGCTGGCGAGGAACCCGGTCTCTCCAAGCAGC
ATGTTGAATTTGAACCCGATGCAGAGGTCCTCACTGATCAGCGACGACCC
AGTAGCGTGGCTGAGAAGGAGAACCAACCTTCTGGGGCTGGCAAAAAGGG
AAAGAAGGATAAACGTAACGGAGCCAACAACAAGACAGCCGGAATCCTGG
TCAACAAGAACGAAACTGTTGCTGTTAAGCCTGCAGCTAACGCCGAGGAG
ACACCAACTTTGAATAATTTTGAAACCAAGATCCCCAAGGATGTGGTGGA
GCTGAAGAAGCAAGAGCAAAAGGAACGCAAAGAAGACAACAACAACAAGC
AGCAAAGTCAGAAAAAGATCGCCGGAGGCAATGTGTCCAAGAAGGAGAAG
GTCGTAGCTGTCGAAACAGAGGCACCCGTAGTGACCAAGCAGATCCTCAA
GCAACAGCAGCAGCAGCAGAATGGCTCACCCAAAACGCAACACAACCAGG
CCAACAACAAAACCAAGCAGCAGCAGCAAAACAAGAAACAGAATCAAAGG
AAACCCTAACGGGTAAGGATTTGGCTCATGCTTTGGATAACTGGCCGATC
ACCAGAACCA
BO10824.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:11:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18212-PF | 2529 | CG18212-RF | 1..832 | 17..848 | 4160 | 100 | Plus |
CG18212-PE | 2529 | CG18212-RE | 1..832 | 17..848 | 4160 | 100 | Plus |
CG18212-PG | 2625 | CG18212-RG | 1..832 | 17..848 | 4160 | 100 | Plus |
CG18212-PA | 2529 | CG18212-RA | 1..832 | 17..848 | 4160 | 100 | Plus |
CG18212-PD | 2529 | CG18212-RD | 1..832 | 17..848 | 4160 | 100 | Plus |
CG18212-PB | 2529 | CG18212-RB | 1..832 | 17..848 | 4160 | 100 | Plus |
CG18212-PF | 2529 | CG18212-RF | 831..875 | 846..890 | 225 | 100 | Plus |
CG18212-PE | 2529 | CG18212-RE | 831..875 | 846..890 | 225 | 100 | Plus |
CG18212-PG | 2625 | CG18212-RG | 831..875 | 846..890 | 225 | 100 | Plus |
CG18212-PA | 2529 | CG18212-RA | 831..875 | 846..890 | 225 | 100 | Plus |
CG18212-PD | 2529 | CG18212-RD | 831..875 | 846..890 | 225 | 100 | Plus |
CG18212-PB | 2529 | CG18212-RB | 831..875 | 846..890 | 225 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:33:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
alt-RI | 3834 | CG18212-RI | 118..1013 | 17..910 | 4430 | 99.8 | Plus |
alt-RH | 3909 | CG18212-RH | 289..1184 | 17..910 | 4430 | 99.8 | Plus |
alt-RB | 3282 | CG18212-RB | 116..1011 | 17..910 | 4430 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:33:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17677225..17678120 | 910..17 | 4380 | 99.8 | Minus |
Blast to na_te.dros performed 2015-02-12 04:33:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2436 | 713..845 | 199 | 66.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6702..6844 | 706..847 | 180 | 64.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6728..6921 | 637..831 | 177 | 61.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6729..6842 | 750..860 | 173 | 67 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6732..6876 | 715..846 | 170 | 65.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6756..6902 | 706..848 | 165 | 63.3 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1065..1171 | 738..853 | 152 | 65.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2595..2699 | 749..853 | 137 | 61.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2304..2396 | 749..847 | 137 | 65.7 | Plus |
Dvir\Uvir | 6564 | Dvir\Uvir VIRUVIR 6564bp | 4505..4617 | 748..859 | 136 | 65.5 | Plus |
BO10824.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:50:19 Download gff for
BO10824.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18212-PG | 1..895 | 17..909 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:07:46 Download gff for
BO10824.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18212-PD | 1..895 | 17..909 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:47:11 Download gff for
BO10824.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alt-RB | 116..1010 | 17..909 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:59:58 Download gff for
BO10824.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alt-RB | 116..1010 | 17..909 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:59:58 Download gff for
BO10824.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17677226..17678120 | 17..909 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:47:11 Download gff for
BO10824.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13502948..13503842 | 17..909 | 99 | | Minus |
BO10824.complete Sequence
2656 bp (2656 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631886
> BO10824.complete
GAAGTTATCAGTCGACATGGACTTCCACATACTGATCGTCATCGGTTGTG
TGGTCAGCGCCTCGCTGCTCTCGTTCCTGTTCATCAACAAGATCTTCCGG
CGCAAGACTTTTGAGGAGGTGGTAGCCGAGAAGCGTGCCCTGAGCGCCAA
TCTCTACAAGGCGGCCGGTGGTGCCGCTACCAAGAAGCCCAAGAAGAAGG
AACTTAAGCGCGAAAAGAAGCAACGTCAGCGGGAACAGCAGAGGGATGTG
AACAACGAGCCGGAACCAGAGGAAGCCGAAGACTACTCCGATGGTCAGTC
GGAGGGTCAGGGCTCCGTGGCTGGCGAGGAACCCGGTCTCTCCAAGCAGC
ATGTTGAATTTGAACCCGATGCAGAGGTCCTCACTGATCAGCGACGACCC
AGTAGCGTGGCTGAGAAGGAGAACCAACCTTCTGGGGCTGGCAAAAAGGG
AAAGAAGGATAAACGTAACGGAGCCAACAACAAGACAGCCGGAATCCTGG
TCAACAAGAACGAAACTGTTGCTGTTAAGCCTGCAGCTAACGCCGAGGAG
ACACCAACTTTGAATAATTTTGAAACCAAGATCCCCAAGGATGTGGTGGA
GCTGAAGAAGCAAGAGCAAAAGGAACGCAAAGAAGACAACAACAACAAGC
AGCAAAGTCAGAAAAAGATCGCCGGAGGCAATGTGTCCAAGAAGGAGAAG
GTCGTAGCTGTCGAAACAGAGGCACCCGTAGTGACCAAGCAGATCCTCAA
GCAACAGCAGCAGCAGCAGAATGGCTCACCCAAAACGCAACACAACCAGG
CCAACAACAAAACCAAGCAGCAGCAGCAAAACAAGAAACAGAATCAAAAG
GAAACCCTAACGGGTAAGGATTTGGCTCATGCTTTGGATAAACTGGCCGA
TCACCAGAACCAGACCATTGGTGTCAACGCTCTGATGAACGTATTTTCTC
GTGCCGAGCTAAATCGCTCAGAGATTCAGATACTCATCGACTATCTGCTA
AACAAGCAACAGGATATGCCCGCTTCGCACTCTGAGTGGTCGGATGACAT
CTGCCAGAAACTCAAGCGTCAGCTGGAAGAGAAGGAAAAGCTGTTGGCCG
AGGAGCAGGAGGCCTCCATCGGAATTCAGGCTAAGCTTCGCGAACTACGC
CAAGAGGTTAACACAGAACGCGCCCAGATGCATGCCCGAAACCAGGCTTA
TATCGATAAGTTGCAAGGCAAGGAGCAGGAGCTAGCCGCCCTCAACCAGG
AGCTGTCCAGTCTGAATGACAAGTTGACGCTTGAGCGTCAACAGCTTACG
ACCCTTCGGAGGGAGAAGCAAGCCAATTCGCAGGATCTGGTTCAGTTGCA
ACATTTGCAACAGGATCTCGCACACAAGGAAAAGTGCCTGGCGGAAATGA
CCGCATTCGTTAATGCAGAGACCCAGCAGAAGAACGAGGTGATTCAGCAG
CAGGCTCAGCAGCTGCAAGCCCTGGAGCTGCAACGCGAAGAGCTGGAAGC
GCGCCAGAACAATAGCATCTTTGAGCTAGAGCAGCGCAAGCAGCTGGAGG
CGGAGAACGCCGACCTCAAGCAGGAGCTGAGCGCTGTTCAACAGACTCAG
TCGGAGCTGCAGCGCGTCCACGCCGCCGAGTTGCAGGAGCTGCGACAGAA
CTTGTCCGTCCTAGAGGCTCGCAACGTTGCGCTCAGCCAACAGCTCACCC
AAGCCGCCAACAGCGCGGTTCAGGCCACCGCCGCCCAGTCGGAGCAGGCC
CAGGTTCAGACCGAAGCGCTGGCCCAGAAGCAGCAGGAGCTGAGTGCTCT
TCGCTCGCAGGTCGGCTCGCTGACGGATGCCCACGCCCAGCAGCAGAAGC
AAGCCAACGCTCTGCAGTCGCAGCTCCAGGAGGCTCAACAGCGGGCCGAG
CAGCTGCAGGCTAAGGAGCAACATCTGCAACAGGAGCTCCAGGAGCAGCG
GGAGAAAAATAATGACGTGCGTATGAAAAATTGGAAGTTGATTGAAGCGT
TGCAAAATGCCGAAGCATTAACAGCTAAGACGAAAACAAATTCAGCGCAG
TCCGTAGGCCAACAACACAAAGAGCTGCAGCTGCAGCAACAGAAGGCAGT
GGCCGCCAATGGCGGGGGTAGTGCCAGTTCAGCCAAGAGCGAGCAGCAGA
GGATCCGGGATCTCTACCAGCGCCTTTATCCCGACGCTGTGAAAGCGCAG
TCGGGAAATGCCCTGCAAGCATCCTTTGACCAGTGGCTGGAACAGGTCCT
GGCCACCCATGTCAAGCAGCAACAGGATAAGCTGCGGCAGAAGCTCGACG
CGGAGAAGTCCGAGAAGCAGAGCAGCAGTAGTCATAAGTCCACACAATCA
AGCAACAGTAGCAGTAGCAACCACAATAGCACCCACAACAATATTAGTAG
CAATAATAGTAGTTCGAATAGCCAATCCTCCTCCGCCGCCGAGCAGCAGG
AGCTGCACAAACAGAACCTGCAGCTGCGGGAGTGCAACGACAAGCTCACC
CAGCTGGTCACCAAGACGACAAACACATTGATGGACTTGGAAGAGCGTGC
TCGTGAGCAGGACGAGCACTGGCGTGGCATCGTCGAGCAGAAGGAGCAGC
TGATCCTAACCCTGCAGCAGCATGCCTCAAACGGAGAAGCAAGCTTTCTA
GACCAT
BO10824.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:43:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
alt-RI | 2625 | CG18212-PI | 1..2622 | 17..2638 | 13110 | 100 | Plus |
alt-RG | 2625 | CG18212-PG | 1..2622 | 17..2638 | 13110 | 100 | Plus |
alt-RH | 2529 | CG18212-PH | 1..1947 | 17..1963 | 9735 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:43:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
alt-RI | 3834 | CG18212-RI | 118..2739 | 17..2638 | 13110 | 100 | Plus |
alt-RG | 3470 | CG18212-RG | 208..2829 | 17..2638 | 13110 | 100 | Plus |
alt-RH | 3909 | CG18212-RH | 289..2235 | 17..1963 | 9735 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:43:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17676837..17678120 | 1300..17 | 6420 | 100 | Minus |
3R | 32079331 | 3R | 17676086..17676750 | 1964..1300 | 3325 | 100 | Minus |
3R | 32079331 | 3R | 17675075..17675533 | 2518..2060 | 2295 | 100 | Minus |
3R | 32079331 | 3R | 17674892..17675012 | 2638..2518 | 605 | 100 | Minus |
3R | 32079331 | 3R | 17675642..17675737 | 2059..1964 | 480 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 19:43:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2436 | 713..845 | 199 | 66.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6702..6849 | 706..852 | 187 | 64.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6729..6834 | 750..852 | 178 | 69.2 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1054..1164 | 1831..1938 | 178 | 64.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6728..6921 | 637..831 | 177 | 61.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6756..6902 | 706..854 | 171 | 63.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6732..6876 | 715..846 | 170 | 65.8 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1065..1153 | 738..834 | 149 | 70.4 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1065..1152 | 2321..2408 | 143 | 62.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2304..2405 | 749..853 | 139 | 61.9 | Plus |
Dvir\Uvir | 6564 | Dvir\Uvir VIRUVIR 6564bp | 4505..4611 | 748..853 | 133 | 66.4 | Plus |
BO10824.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:56:37 Download gff for
BO10824.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alt-RG | 1..2625 | 17..2639 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:13:48 Download gff for
BO10824.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alt-RG | 208..2829 | 17..2638 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:30 Download gff for
BO10824.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alt-RG | 208..2829 | 17..2640 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:56:37 Download gff for
BO10824.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alt-RG | 208..2829 | 17..2638 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:07:11 Download gff for
BO10824.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alt-RG | 208..2829 | 17..2640 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:07:11 Download gff for
BO10824.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17674890..17675011 | 2519..2640 | 98 | <- | Minus |
3R | 17675075..17675533 | 2060..2518 | 100 | <- | Minus |
3R | 17675642..17675737 | 1964..2059 | 100 | <- | Minus |
3R | 17676087..17676749 | 1301..1963 | 100 | <- | Minus |
3R | 17676837..17678120 | 17..1300 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:30 Download gff for
BO10824.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13500612..13500733 | 2519..2640 | 98 | <- | Minus |
arm_3R | 13500797..13501255 | 2060..2518 | 100 | <- | Minus |
arm_3R | 13501364..13501459 | 1964..2059 | 100 | <- | Minus |
arm_3R | 13501809..13502471 | 1301..1963 | 100 | <- | Minus |
arm_3R | 13502559..13503842 | 17..1300 | 100 | | Minus |
BO10824.pep Sequence
Translation from 16 to 2656
> BO10824.pep
MDFHILIVIGCVVSASLLSFLFINKIFRRKTFEEVVAEKRALSANLYKAA
GGAATKKPKKKELKREKKQRQREQQRDVNNEPEPEEAEDYSDGQSEGQGS
VAGEEPGLSKQHVEFEPDAEVLTDQRRPSSVAEKENQPSGAGKKGKKDKR
NGANNKTAGILVNKNETVAVKPAANAEETPTLNNFETKIPKDVVELKKQE
QKERKEDNNNKQQSQKKIAGGNVSKKEKVVAVETEAPVVTKQILKQQQQQ
QNGSPKTQHNQANNKTKQQQQNKKQNQKETLTGKDLAHALDKLADHQNQT
IGVNALMNVFSRAELNRSEIQILIDYLLNKQQDMPASHSEWSDDICQKLK
RQLEEKEKLLAEEQEASIGIQAKLRELRQEVNTERAQMHARNQAYIDKLQ
GKEQELAALNQELSSLNDKLTLERQQLTTLRREKQANSQDLVQLQHLQQD
LAHKEKCLAEMTAFVNAETQQKNEVIQQQAQQLQALELQREELEARQNNS
IFELEQRKQLEAENADLKQELSAVQQTQSELQRVHAAELQELRQNLSVLE
ARNVALSQQLTQAANSAVQATAAQSEQAQVQTEALAQKQQELSALRSQVG
SLTDAHAQQQKQANALQSQLQEAQQRAEQLQAKEQHLQQELQEQREKNND
VRMKNWKLIEALQNAEALTAKTKTNSAQSVGQQHKELQLQQQKAVAANGG
GSASSAKSEQQRIRDLYQRLYPDAVKAQSGNALQASFDQWLEQVLATHVK
QQQDKLRQKLDAEKSEKQSSSSHKSTQSSNSSSSNHNSTHNNISSNNSSS
NSQSSSAAEQQELHKQNLQLRECNDKLTQLVTKTTNTLMDLEERAREQDE
HWRGIVEQKEQLILTLQQHASNGEASFLDH
BO10824.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:46:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
alt-PI | 874 | CG18212-PI | 1..874 | 1..874 | 4333 | 100 | Plus |
alt-PG | 874 | CG18212-PG | 1..874 | 1..874 | 4333 | 100 | Plus |
alt-PH | 842 | CG18212-PH | 1..842 | 1..874 | 4132 | 96.3 | Plus |
alt-PB | 842 | CG18212-PB | 1..842 | 1..874 | 4132 | 96.3 | Plus |
alt-PD | 842 | CG18212-PD | 1..842 | 1..874 | 4132 | 96.3 | Plus |