Clone BO10826 Report

Search the DGRC for BO10826

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:108
Well:26
Vector:pDNR-Dual
Associated Gene/TranscriptCG8668-RA
Protein status:BO10826.pep:
Sequenced Size:1789

Clone Sequence Records

BO10826.3prime Sequence

934 bp (833 high quality bases) assembled on 2006-04-19

> BO10826.3prime
ATGGTCTAGAAAGCTTGCTTTACACTTGGTGGTCTGATCCAGCAGCTTTT
TCCACAAATCGAATTGTTCGTTCGACTTGATCATGTGCACGCTGATTGCG
TTGCGGATGTTGCACGGGTTAAATGAGATGCGTCGGTTAACGAACTCGTT
CGCCTGCACCCGCTTAACATTAAGGCTCTTGGCTACTATGCCCGTGGTGA
ACACGTCCTCCAGCTTCAGATAAACGGTCTTCAGAGATCGCACGTAGAGT
TCGTGCACAATGTCTCCGGTGAGTACGTAGGCGGGTCCAGTGGTGAAGGA
CGGGAATACTCCCGCCGCGAACTGATCGACGGACACATAGTATTTGGATT
TCTTATTGCGAATCGGTTTCCACTTCTTGGCCAAACGACCGTATATGGTA
CGCTTGTCCTTGTGCTTGTCCAGGAAGGTCAGCAGCTTGGGCACATTGAT
GAACATGTCGTCGTCCGTCTTGAGAATGTACTTTGCCTTCGGGCAATGCA
CATCTGCCCATTCCAGCGTCGATATTGTCTTGAGCGTGAGGTTGTTGTAC
GAGTCTATGAAGTTTCCCCGTATCAGATCTCCATAGATGAAGTTCTCCTG
GGTAAGCGCTTTGTTTATGGTTTCATTGGTGCCACGTCCTAGGACAAATG
CCATGCCCACGTCCCTTCTCGTCCCGTAATGCATCCAAGTCTGCCGGATG
GACATGCGGGCTGCATCGTGAGACATCGCTGAGCTAATAAGAACCAGGAG
CTTAATAAACTCTCCGCCTTTCGGACATATGCGCTCCGCATCGATCTCCT
CATCCACGTGGCCTGGCTCGTAGAGTGTCTCGGTGGCCACTCCCTTGGAG
GGATCTACAGGAGCACTTGGCACCTTGCTCTTCGTCGTTTTCACAGGTGG
CACTGGTGGTTTTGCGGATTTTGGCAGAGGGACT

BO10826.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:11:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG8668-PA 1758 CG8668-RA 840..1755 934..19 4580 100 Minus
CG8673-PA 1263 CG8673-RA 778..830 492..440 165 92.4 Minus
CG8673-PA 1263 CG8673-RA 601..629 669..641 145 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 10:40:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG8668-RB 3215 CG8668-RB 1951..2866 934..19 4580 100 Minus
CG8668-RA 2889 CG8668-RA 1625..2540 934..19 4580 100 Minus
CG8673-RA 1404 CG8673-RA 619..1145 714..188 615 74.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 10:40:10
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8132725..8133640 934..19 4580 100 Minus
2L 23513712 2L 8125014..8125540 714..188 610 74.4 Minus
Blast to na_te.dros performed on 2015-02-01 10:40:13 has no hits.

BO10826.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:50:22 Download gff for BO10826.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8668-PA 840..1758 18..934 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:07:50 Download gff for BO10826.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8668-PA 840..1758 18..934 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 16:30:06 Download gff for BO10826.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8668-RA 1625..2540 19..934 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 12:06:23 Download gff for BO10826.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8668-RA 1625..2540 19..934 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 12:06:23 Download gff for BO10826.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 8132725..8133640 19..934 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 16:30:06 Download gff for BO10826.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8132725..8133640 19..934 100   Minus

BO10826.5prime Sequence

735 bp (696 high quality bases) assembled on 2006-04-19

> BO10826.5prime
GAAGTTATCAGTCGACATGGCGGCTATGGCCAATCTTCACAACACGCGCA
TGCTACGCTTCTTTTTAGTCCTAATCGTGGTGATCCTAACCATTTTCATC
TACGCCTCGTACTCAACGACTAGCACCCTCACAGCGAACCATGTGCACCC
TGCGGCATCACCGCCACAGCAGCTGATTGGCAGTCATCCTGGGCGACAGC
CCATGGACCAAGTGCCGCCAGTCAATAGCACGGATAAGGAGTACAATTCG
CCACCTGGTGAAAGTTCGTCTAAGCAGCAAAGCGTATCCAGCAGACACTC
GCAACAATTACCGCCGCAACAGGCAGAGATACACAAGAGGCATCCGCAGC
ACCGCCTGCCCACCATCGACGAGGATGCTCTGCTCGACGGTGGCTCCGCG
GGCGCCAGTCCCCAGGTTGGTGGCCCTGACCAAACGCCCAATGTTATGGC
GGATGAGCTGCTGGAGGAGCAGCAGTATGGTCAGAGTGTTGATGGCATCA
CAGGCAACATCAACAGTAGCACCAACAACAACAGCTCTGCCGACACGTTG
GCTGTTAAACAATCGATTCCCGCCCAGTCACCACAACAACAACTGCCCCA
GTCACAGTCGCAGGTGCAGCCAGGCCTTTCCGATGCCGACCTCCTCATAC
CCACTTCCAATTTGCAAAAGTTTATTGAGAACGCCGATAGGATACTGAAG
AACATCACTTCGAACAGTAGCACGGGCAATCCATC

BO10826.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:11:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG8668-PA 1758 CG8668-RA 1..719 17..735 3595 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:49:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG8668-RB 3215 CG8668-RB 1111..1830 16..735 3600 100 Plus
CG8668-RA 2889 CG8668-RA 785..1504 16..735 3600 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:49:27
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8131425..8131913 16..504 2445 100 Plus
2L 23513712 2L 8131968..8132199 499..730 1145 99.6 Plus
Blast to na_te.dros performed 2015-02-10 23:49:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2350..2508 456..620 145 57.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2299..2419 489..612 144 60.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6846..7070 456..683 141 55 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2363..2486 495..622 135 58.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2437..2478 494..535 120 76.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2786..2826 495..535 115 75.6 Plus

BO10826.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:50:23 Download gff for BO10826.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8668-PA 1..719 17..735 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:07:52 Download gff for BO10826.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8668-PA 1..719 17..735 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:28:34 Download gff for BO10826.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8668-RA 777..1504 10..735 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:14:06 Download gff for BO10826.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8668-RA 777..1504 10..735 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:14:06 Download gff for BO10826.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 8131417..8131912 10..503 99 -> Plus
2L 8131973..8132202 504..735 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:28:34 Download gff for BO10826.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8131417..8131912 10..503 99 -> Plus
arm_2L 8131973..8132202 504..735 98   Plus

BO10826.complete Sequence

1789 bp assembled on 2008-01-16

GenBank Submission: FJ631887

> BO10826.complete
GAAGTTATCAGTCGACATGGCGGCTATGGCCAATCTTCACAACACGCGCA
TGCTACGCTTCTTTTTAGTCCTAATCGTGGTGATCCTAACCATTTTCATC
TACGCCTCGTACTCAACGACTAGCACCCTCACAGCGAACCATGTGCACCC
TGCGGCATCACCGCCACAGCAGCTGATTGGCAGTCATCCTGGGCGACAGC
CCATGGACCAAGTGCCGCCAGTCAATAGCACGGATAAGGAGTACAATTCG
CCACCTGGTGAAAGTTCGTCTAAGCAGCAAAGCGTATCCAGCAGACACTC
GCAACAATTACCGCCGCAACAGGCAGAGATACACAAGAGGCATCCGCAGC
ACCGCCTGCCCACCATCGACGAGGATGCTCTGCTCGACGGTGGCTCCGCG
GGCGCCAGTCCCCAGGTTGGTGGCCCTGACCAAACGCCCAATGTTATGGC
GGATGAGCTGCTGGAGGAGCAGCAGTATGGTCAGAGTGTTGATGGCATCA
CAGGCAACATCAACAGTAGCACCAACAACAACAGCTCTGCCGACACGTTG
GCTGTTAAACAATCGATTCCCGCCCAGTCACCACAACAACAACTGCCCCA
GTCACAGTCGCAGGTGCAGCCAGGCCTTTCCGATGCCGACCTCCTCATAC
CCACTTCCAATTTGCAAAAGTTTATTGAGAACGCCGATAGGATACTGAAG
AACATCACTTCGAACAGTAGCACGGGCAATCCATCGGATATGGCACAACT
CAACGCAGTGGACGGTAAACTGGAAGTCTCGGGCGTTGAGTCCGAAAAGC
AGGAACCGGAATCCAAGGTGATACAGGAAATTAAGGAGGCCAAGAAAGAG
GCGGCAGTCCCTCTGCCAAAATCCGCAAAACCACCAGTGCCACCTGTGAA
AACGACGAAGAGCAAGGTGCCAAGTGCTCCTGTAGATCCCTCCAAGGGAG
TGGCCACCGAGACACTCTACGAGCCAGGCCACGTGGATGAGGAGATCGAT
GCGGAGCGCATATGTCCGAAAGGCGGAGAGTTTATTAAGCTCCTGGTTCT
TATTAGCTCAGCGATGTCTCACGATGCAGCCCGCATGTCCATCCGGCAGA
CTTGGATGCATTACGGGACGAGAAGGGACGTGGGCATGGCATTTGTCCTA
GGACGTGGCACCAATGAAACCATAAACAAAGCGCTTACCCAGGAGAACTT
CATCTATGGAGATCTGATACGGGGAAACTTCATAGACTCGTACAACAACC
TCACGCTCAAGACAATATCGACGCTGGAATGGGCAGATGTGCATTGCCCG
AAGGCAAAGTACATTCTCAAGACGGACGACGACATGTTCATCAATGTGCC
CAAGCTGCTGACCTTCCTGGACAAGCACAAGGACAAGCGTACCATATACG
GTCGTTTGGCCAAGAAGTGGAAACCGATTCGCAATAAGAAATCCAAATAC
TATGTGTCCGTCGATCAGTTCGCGGCGGGAGTATTCCCGTCCTTCACCAC
TGGACCCGCCTACGTACTCACCGGAGACATTGTGCACGAACTCTACGTGC
GATCTCTGAAGACCGTTTATCTGAAGCTGGAGGACGTGTTCACCACGGGC
ATAGTAGCCAAGAGCCTTAATGTTAAGCGGGTGCAGGCGAACGAGTTCGT
TAACCGACGCATCTCATTTAACCCGTGCAACATCCGCAACGCAATCAGCG
TGCACATGATCAAGTCGAACGAACAATTCGATTTGTGGAAAAAGCTGCTG
GATCAGACCACCAAGTGTAAAGCAAGCTTTCTAGACCAT

BO10826.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:26:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG8668-RB 1758 CG8668-PB 1..1755 17..1771 8775 100 Plus
CG8668-RA 1758 CG8668-PA 1..1755 17..1771 8775 100 Plus
CG8673-RA 1263 CG8673-PA 556..1082 1076..1602 610 74.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:26:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG8668-RB 3215 CG8668-RB 1111..2866 16..1771 8780 100 Plus
CG8668-RA 2889 CG8668-RA 785..2540 16..1771 8780 100 Plus
CG8673-RA 1404 CG8673-RA 619..1145 1076..1602 610 74.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:26:24
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8132594..8133640 725..1771 5235 100 Plus
2L 23513712 2L 8131425..8131913 16..504 2445 100 Plus
2L 23513712 2L 8131968..8132199 499..730 1145 99.6 Plus
2L 23513712 2L 8125014..8125540 1076..1602 610 74.4 Plus
Blast to na_te.dros performed 2014-11-27 13:26:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2350..2508 456..620 145 57.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2299..2419 489..612 144 60.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6846..7070 456..683 141 55 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2363..2486 495..622 135 58.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2437..2478 494..535 120 76.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2786..2826 495..535 115 75.6 Plus

BO10826.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:56:46 Download gff for BO10826.complete
Subject Subject Range Query Range Percent Splice Strand
CG8668-RA 1..1758 17..1772 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:33:57 Download gff for BO10826.complete
Subject Subject Range Query Range Percent Splice Strand
CG8668-RA 763..2517 17..1773 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:50:49 Download gff for BO10826.complete
Subject Subject Range Query Range Percent Splice Strand
CG8668-RA 786..2540 17..1773 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:56:46 Download gff for BO10826.complete
Subject Subject Range Query Range Percent Splice Strand
CG8668-RA 754..2517 10..1771 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:18:26 Download gff for BO10826.complete
Subject Subject Range Query Range Percent Splice Strand
CG8668-RA 786..2540 17..1773 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:18:26 Download gff for BO10826.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8131426..8131912 17..503 100 -> Plus
2L 8131973..8132194 504..725 100 -> Plus
2L 8132595..8133640 726..1773 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:50:49 Download gff for BO10826.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8131426..8131912 17..503 100 -> Plus
arm_2L 8131973..8132194 504..725 100 -> Plus
arm_2L 8132595..8133640 726..1773 99   Plus

BO10826.pep Sequence

Translation from 16 to 1789

> BO10826.pep
MAAMANLHNTRMLRFFLVLIVVILTIFIYASYSTTSTLTANHVHPAASPP
QQLIGSHPGRQPMDQVPPVNSTDKEYNSPPGESSSKQQSVSSRHSQQLPP
QQAEIHKRHPQHRLPTIDEDALLDGGSAGASPQVGGPDQTPNVMADELLE
EQQYGQSVDGITGNINSSTNNNSSADTLAVKQSIPAQSPQQQLPQSQSQV
QPGLSDADLLIPTSNLQKFIENADRILKNITSNSSTGNPSDMAQLNAVDG
KLEVSGVESEKQEPESKVIQEIKEAKKEAAVPLPKSAKPPVPPVKTTKSK
VPSAPVDPSKGVATETLYEPGHVDEEIDAERICPKGGEFIKLLVLISSAM
SHDAARMSIRQTWMHYGTRRDVGMAFVLGRGTNETINKALTQENFIYGDL
IRGNFIDSYNNLTLKTISTLEWADVHCPKAKYILKTDDDMFINVPKLLTF
LDKHKDKRTIYGRLAKKWKPIRNKKSKYYVSVDQFAAGVFPSFTTGPAYV
LTGDIVHELYVRSLKTVYLKLEDVFTTGIVAKSLNVKRVQANEFVNRRIS
FNPCNIRNAISVHMIKSNEQFDLWKKLLDQTTKCKASFLDH

BO10826.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:18:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG8668-PB 585 CG8668-PB 1..585 1..585 3015 100 Plus
CG8668-PA 585 CG8668-PA 1..585 1..585 3015 100 Plus
CG8673-PA 420 CG8673-PA 140..416 308..584 1006 66.4 Plus
CG11357-PD 434 CG11357-PD 134..393 340..580 289 27.3 Plus
CG30036-PA 388 CG30036-PA 60..370 342..584 288 26.8 Plus