Clone Sequence Records
BO10826.3prime Sequence
934 bp (833 high quality bases) assembled on 2006-04-19
> BO10826.3prime
ATGGTCTAGAAAGCTTGCTTTACACTTGGTGGTCTGATCCAGCAGCTTTT
TCCACAAATCGAATTGTTCGTTCGACTTGATCATGTGCACGCTGATTGCG
TTGCGGATGTTGCACGGGTTAAATGAGATGCGTCGGTTAACGAACTCGTT
CGCCTGCACCCGCTTAACATTAAGGCTCTTGGCTACTATGCCCGTGGTGA
ACACGTCCTCCAGCTTCAGATAAACGGTCTTCAGAGATCGCACGTAGAGT
TCGTGCACAATGTCTCCGGTGAGTACGTAGGCGGGTCCAGTGGTGAAGGA
CGGGAATACTCCCGCCGCGAACTGATCGACGGACACATAGTATTTGGATT
TCTTATTGCGAATCGGTTTCCACTTCTTGGCCAAACGACCGTATATGGTA
CGCTTGTCCTTGTGCTTGTCCAGGAAGGTCAGCAGCTTGGGCACATTGAT
GAACATGTCGTCGTCCGTCTTGAGAATGTACTTTGCCTTCGGGCAATGCA
CATCTGCCCATTCCAGCGTCGATATTGTCTTGAGCGTGAGGTTGTTGTAC
GAGTCTATGAAGTTTCCCCGTATCAGATCTCCATAGATGAAGTTCTCCTG
GGTAAGCGCTTTGTTTATGGTTTCATTGGTGCCACGTCCTAGGACAAATG
CCATGCCCACGTCCCTTCTCGTCCCGTAATGCATCCAAGTCTGCCGGATG
GACATGCGGGCTGCATCGTGAGACATCGCTGAGCTAATAAGAACCAGGAG
CTTAATAAACTCTCCGCCTTTCGGACATATGCGCTCCGCATCGATCTCCT
CATCCACGTGGCCTGGCTCGTAGAGTGTCTCGGTGGCCACTCCCTTGGAG
GGATCTACAGGAGCACTTGGCACCTTGCTCTTCGTCGTTTTCACAGGTGG
CACTGGTGGTTTTGCGGATTTTGGCAGAGGGACT
BO10826.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:11:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8668-PA | 1758 | CG8668-RA | 840..1755 | 934..19 | 4580 | 100 | Minus |
CG8673-PA | 1263 | CG8673-RA | 778..830 | 492..440 | 165 | 92.4 | Minus |
CG8673-PA | 1263 | CG8673-RA | 601..629 | 669..641 | 145 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 10:40:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8668-RB | 3215 | CG8668-RB | 1951..2866 | 934..19 | 4580 | 100 | Minus |
CG8668-RA | 2889 | CG8668-RA | 1625..2540 | 934..19 | 4580 | 100 | Minus |
CG8673-RA | 1404 | CG8673-RA | 619..1145 | 714..188 | 615 | 74.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 10:40:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8132725..8133640 | 934..19 | 4580 | 100 | Minus |
2L | 23513712 | 2L | 8125014..8125540 | 714..188 | 610 | 74.4 | Minus |
Blast to na_te.dros performed on 2015-02-01 10:40:13 has no hits.
BO10826.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:50:22 Download gff for
BO10826.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8668-PA | 840..1758 | 18..934 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:07:50 Download gff for
BO10826.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8668-PA | 840..1758 | 18..934 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 16:30:06 Download gff for
BO10826.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8668-RA | 1625..2540 | 19..934 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 12:06:23 Download gff for
BO10826.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8668-RA | 1625..2540 | 19..934 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 12:06:23 Download gff for
BO10826.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8132725..8133640 | 19..934 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 16:30:06 Download gff for
BO10826.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8132725..8133640 | 19..934 | 100 | | Minus |
BO10826.5prime Sequence
735 bp (696 high quality bases) assembled on 2006-04-19
> BO10826.5prime
GAAGTTATCAGTCGACATGGCGGCTATGGCCAATCTTCACAACACGCGCA
TGCTACGCTTCTTTTTAGTCCTAATCGTGGTGATCCTAACCATTTTCATC
TACGCCTCGTACTCAACGACTAGCACCCTCACAGCGAACCATGTGCACCC
TGCGGCATCACCGCCACAGCAGCTGATTGGCAGTCATCCTGGGCGACAGC
CCATGGACCAAGTGCCGCCAGTCAATAGCACGGATAAGGAGTACAATTCG
CCACCTGGTGAAAGTTCGTCTAAGCAGCAAAGCGTATCCAGCAGACACTC
GCAACAATTACCGCCGCAACAGGCAGAGATACACAAGAGGCATCCGCAGC
ACCGCCTGCCCACCATCGACGAGGATGCTCTGCTCGACGGTGGCTCCGCG
GGCGCCAGTCCCCAGGTTGGTGGCCCTGACCAAACGCCCAATGTTATGGC
GGATGAGCTGCTGGAGGAGCAGCAGTATGGTCAGAGTGTTGATGGCATCA
CAGGCAACATCAACAGTAGCACCAACAACAACAGCTCTGCCGACACGTTG
GCTGTTAAACAATCGATTCCCGCCCAGTCACCACAACAACAACTGCCCCA
GTCACAGTCGCAGGTGCAGCCAGGCCTTTCCGATGCCGACCTCCTCATAC
CCACTTCCAATTTGCAAAAGTTTATTGAGAACGCCGATAGGATACTGAAG
AACATCACTTCGAACAGTAGCACGGGCAATCCATC
BO10826.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:11:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8668-PA | 1758 | CG8668-RA | 1..719 | 17..735 | 3595 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:49:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8668-RB | 3215 | CG8668-RB | 1111..1830 | 16..735 | 3600 | 100 | Plus |
CG8668-RA | 2889 | CG8668-RA | 785..1504 | 16..735 | 3600 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:49:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8131425..8131913 | 16..504 | 2445 | 100 | Plus |
2L | 23513712 | 2L | 8131968..8132199 | 499..730 | 1145 | 99.6 | Plus |
Blast to na_te.dros performed 2015-02-10 23:49:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2350..2508 | 456..620 | 145 | 57.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2299..2419 | 489..612 | 144 | 60.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6846..7070 | 456..683 | 141 | 55 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2363..2486 | 495..622 | 135 | 58.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2437..2478 | 494..535 | 120 | 76.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2786..2826 | 495..535 | 115 | 75.6 | Plus |
BO10826.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:50:23 Download gff for
BO10826.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8668-PA | 1..719 | 17..735 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:07:52 Download gff for
BO10826.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8668-PA | 1..719 | 17..735 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:28:34 Download gff for
BO10826.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8668-RA | 777..1504 | 10..735 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:14:06 Download gff for
BO10826.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8668-RA | 777..1504 | 10..735 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:14:06 Download gff for
BO10826.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8131417..8131912 | 10..503 | 99 | -> | Plus |
2L | 8131973..8132202 | 504..735 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:28:34 Download gff for
BO10826.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8131417..8131912 | 10..503 | 99 | -> | Plus |
arm_2L | 8131973..8132202 | 504..735 | 98 | | Plus |
BO10826.complete Sequence
1789 bp assembled on 2008-01-16
GenBank Submission: FJ631887
> BO10826.complete
GAAGTTATCAGTCGACATGGCGGCTATGGCCAATCTTCACAACACGCGCA
TGCTACGCTTCTTTTTAGTCCTAATCGTGGTGATCCTAACCATTTTCATC
TACGCCTCGTACTCAACGACTAGCACCCTCACAGCGAACCATGTGCACCC
TGCGGCATCACCGCCACAGCAGCTGATTGGCAGTCATCCTGGGCGACAGC
CCATGGACCAAGTGCCGCCAGTCAATAGCACGGATAAGGAGTACAATTCG
CCACCTGGTGAAAGTTCGTCTAAGCAGCAAAGCGTATCCAGCAGACACTC
GCAACAATTACCGCCGCAACAGGCAGAGATACACAAGAGGCATCCGCAGC
ACCGCCTGCCCACCATCGACGAGGATGCTCTGCTCGACGGTGGCTCCGCG
GGCGCCAGTCCCCAGGTTGGTGGCCCTGACCAAACGCCCAATGTTATGGC
GGATGAGCTGCTGGAGGAGCAGCAGTATGGTCAGAGTGTTGATGGCATCA
CAGGCAACATCAACAGTAGCACCAACAACAACAGCTCTGCCGACACGTTG
GCTGTTAAACAATCGATTCCCGCCCAGTCACCACAACAACAACTGCCCCA
GTCACAGTCGCAGGTGCAGCCAGGCCTTTCCGATGCCGACCTCCTCATAC
CCACTTCCAATTTGCAAAAGTTTATTGAGAACGCCGATAGGATACTGAAG
AACATCACTTCGAACAGTAGCACGGGCAATCCATCGGATATGGCACAACT
CAACGCAGTGGACGGTAAACTGGAAGTCTCGGGCGTTGAGTCCGAAAAGC
AGGAACCGGAATCCAAGGTGATACAGGAAATTAAGGAGGCCAAGAAAGAG
GCGGCAGTCCCTCTGCCAAAATCCGCAAAACCACCAGTGCCACCTGTGAA
AACGACGAAGAGCAAGGTGCCAAGTGCTCCTGTAGATCCCTCCAAGGGAG
TGGCCACCGAGACACTCTACGAGCCAGGCCACGTGGATGAGGAGATCGAT
GCGGAGCGCATATGTCCGAAAGGCGGAGAGTTTATTAAGCTCCTGGTTCT
TATTAGCTCAGCGATGTCTCACGATGCAGCCCGCATGTCCATCCGGCAGA
CTTGGATGCATTACGGGACGAGAAGGGACGTGGGCATGGCATTTGTCCTA
GGACGTGGCACCAATGAAACCATAAACAAAGCGCTTACCCAGGAGAACTT
CATCTATGGAGATCTGATACGGGGAAACTTCATAGACTCGTACAACAACC
TCACGCTCAAGACAATATCGACGCTGGAATGGGCAGATGTGCATTGCCCG
AAGGCAAAGTACATTCTCAAGACGGACGACGACATGTTCATCAATGTGCC
CAAGCTGCTGACCTTCCTGGACAAGCACAAGGACAAGCGTACCATATACG
GTCGTTTGGCCAAGAAGTGGAAACCGATTCGCAATAAGAAATCCAAATAC
TATGTGTCCGTCGATCAGTTCGCGGCGGGAGTATTCCCGTCCTTCACCAC
TGGACCCGCCTACGTACTCACCGGAGACATTGTGCACGAACTCTACGTGC
GATCTCTGAAGACCGTTTATCTGAAGCTGGAGGACGTGTTCACCACGGGC
ATAGTAGCCAAGAGCCTTAATGTTAAGCGGGTGCAGGCGAACGAGTTCGT
TAACCGACGCATCTCATTTAACCCGTGCAACATCCGCAACGCAATCAGCG
TGCACATGATCAAGTCGAACGAACAATTCGATTTGTGGAAAAAGCTGCTG
GATCAGACCACCAAGTGTAAAGCAAGCTTTCTAGACCAT
BO10826.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:26:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8668-RB | 1758 | CG8668-PB | 1..1755 | 17..1771 | 8775 | 100 | Plus |
CG8668-RA | 1758 | CG8668-PA | 1..1755 | 17..1771 | 8775 | 100 | Plus |
CG8673-RA | 1263 | CG8673-PA | 556..1082 | 1076..1602 | 610 | 74.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:26:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8668-RB | 3215 | CG8668-RB | 1111..2866 | 16..1771 | 8780 | 100 | Plus |
CG8668-RA | 2889 | CG8668-RA | 785..2540 | 16..1771 | 8780 | 100 | Plus |
CG8673-RA | 1404 | CG8673-RA | 619..1145 | 1076..1602 | 610 | 74.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:26:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8132594..8133640 | 725..1771 | 5235 | 100 | Plus |
2L | 23513712 | 2L | 8131425..8131913 | 16..504 | 2445 | 100 | Plus |
2L | 23513712 | 2L | 8131968..8132199 | 499..730 | 1145 | 99.6 | Plus |
2L | 23513712 | 2L | 8125014..8125540 | 1076..1602 | 610 | 74.4 | Plus |
Blast to na_te.dros performed 2014-11-27 13:26:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2350..2508 | 456..620 | 145 | 57.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2299..2419 | 489..612 | 144 | 60.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6846..7070 | 456..683 | 141 | 55 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2363..2486 | 495..622 | 135 | 58.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2437..2478 | 494..535 | 120 | 76.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2786..2826 | 495..535 | 115 | 75.6 | Plus |
BO10826.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:56:46 Download gff for
BO10826.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8668-RA | 1..1758 | 17..1772 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:33:57 Download gff for
BO10826.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8668-RA | 763..2517 | 17..1773 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:50:49 Download gff for
BO10826.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8668-RA | 786..2540 | 17..1773 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:56:46 Download gff for
BO10826.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8668-RA | 754..2517 | 10..1771 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:18:26 Download gff for
BO10826.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8668-RA | 786..2540 | 17..1773 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:18:26 Download gff for
BO10826.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8131426..8131912 | 17..503 | 100 | -> | Plus |
2L | 8131973..8132194 | 504..725 | 100 | -> | Plus |
2L | 8132595..8133640 | 726..1773 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:50:49 Download gff for
BO10826.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8131426..8131912 | 17..503 | 100 | -> | Plus |
arm_2L | 8131973..8132194 | 504..725 | 100 | -> | Plus |
arm_2L | 8132595..8133640 | 726..1773 | 99 | | Plus |
BO10826.pep Sequence
Translation from 16 to 1789
> BO10826.pep
MAAMANLHNTRMLRFFLVLIVVILTIFIYASYSTTSTLTANHVHPAASPP
QQLIGSHPGRQPMDQVPPVNSTDKEYNSPPGESSSKQQSVSSRHSQQLPP
QQAEIHKRHPQHRLPTIDEDALLDGGSAGASPQVGGPDQTPNVMADELLE
EQQYGQSVDGITGNINSSTNNNSSADTLAVKQSIPAQSPQQQLPQSQSQV
QPGLSDADLLIPTSNLQKFIENADRILKNITSNSSTGNPSDMAQLNAVDG
KLEVSGVESEKQEPESKVIQEIKEAKKEAAVPLPKSAKPPVPPVKTTKSK
VPSAPVDPSKGVATETLYEPGHVDEEIDAERICPKGGEFIKLLVLISSAM
SHDAARMSIRQTWMHYGTRRDVGMAFVLGRGTNETINKALTQENFIYGDL
IRGNFIDSYNNLTLKTISTLEWADVHCPKAKYILKTDDDMFINVPKLLTF
LDKHKDKRTIYGRLAKKWKPIRNKKSKYYVSVDQFAAGVFPSFTTGPAYV
LTGDIVHELYVRSLKTVYLKLEDVFTTGIVAKSLNVKRVQANEFVNRRIS
FNPCNIRNAISVHMIKSNEQFDLWKKLLDQTTKCKASFLDH
BO10826.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:18:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8668-PB | 585 | CG8668-PB | 1..585 | 1..585 | 3015 | 100 | Plus |
CG8668-PA | 585 | CG8668-PA | 1..585 | 1..585 | 3015 | 100 | Plus |
CG8673-PA | 420 | CG8673-PA | 140..416 | 308..584 | 1006 | 66.4 | Plus |
CG11357-PD | 434 | CG11357-PD | 134..393 | 340..580 | 289 | 27.3 | Plus |
CG30036-PA | 388 | CG30036-PA | 60..370 | 342..584 | 288 | 26.8 | Plus |