Clone BO10833 Report

Search the DGRC for BO10833

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:108
Well:33
Vector:pDNR-Dual
Associated Gene/TranscriptCG7536-RA
Protein status:BO10833.pep: validated full length
Sequenced Size:2056

Clone Sequence Records

BO10833.3prime Sequence

776 bp (775 high quality bases) assembled on 2006-04-19

> BO10833.3prime
ATGGTCTAGAAAGCTTGCCAATTTTTTACTGTCCATATCGATCCTGAGAT
CGGGCAGCGATCCGCGTGTCTGCAGCAGGCTCCGCTTCTCCGGATCCTTA
ACCTTCTTGGGCTTAGGTCGGTTCGCCTTCGTGTAGCGATTGATCACACC
GTCAGCCTCGTCCATCAGGCGCAGGATGAGCGCCTGGTCGGAGGAGTCCA
GCGGCGCTATCGAGATGTCACGAACGGCTCGGAACTTACCGCAGTTGTTC
AGATGCTCGTTCTCCAACCGGAAAAAGTTCCACACAAAGCGACGGAATAC
CTCCAGAATGCCTGTGACGGAGGTCATTATGTCTGAGCTAACGATTTTCA
TCTCGGTGAGGTAGAAAGACAGCGCCCAAATAAAGCGCAGCGCCAGATCC
TCCAAAATGGCAAAGTAGTAAAAACCCGTCGATGAGTAGACAACCTCCTC
GCGCAGGAAAGTATTCTCGCCGGCGTTCTTGTCGAACAGACCCCAATCCA
TTTTGATATCCCACGTGTAGGCGTAGCAAGAGGACACAATCGAGGCGATA
ATCCACAACCAGGTATAGGGATTATCGAATGTGCTGGCATAGTTCGGACT
GTGAAAGCTCTTGAGCGTGGCGAAGATCACCACCATGAAGGTTGTGGAGT
ATTTGCCAGCATTCACCAAATGAGGAAATGCCTCCCGCGAGTCGCGATAT
CGACGCAGGCATTGTGCAAATCGAAACCAGGCGGGCAGGCAATTAACAAT
CGGCCGGATGATAAAGTCCTTCTCCA

BO10833.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:11:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG7536-PB 2025 CG7536-RB 1265..2022 776..19 3790 100 Minus
CG7536-PA 2025 CG7536-RA 1265..2022 776..19 3790 100 Minus
CG10483-PA 2016 CG10483-RA 1522..1569 528..481 140 91.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:07:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG7536-RD 3537 CG7536-RD 1986..2743 776..19 3790 100 Minus
CG7536-RC 3494 CG7536-RC 1571..2328 776..19 3790 100 Minus
CG7536-RA 3019 CG7536-RA 1622..2379 776..19 3790 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:07:26
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18079657..18079931 19..293 1375 100 Plus
X 23542271 X 18080416..18080595 597..776 900 100 Plus
X 23542271 X 18080187..18080357 426..596 855 100 Plus
X 23542271 X 18079993..18080127 293..427 675 100 Plus
3L 28110227 3L 5918754..5918856 426..528 230 81.6 Plus
3L 28110227 3L 5918420..5918482 244..306 180 85.7 Plus
Blast to na_te.dros performed on 2015-02-10 22:07:30 has no hits.

BO10833.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:50:37 Download gff for BO10833.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7536-PA 1266..2025 18..775 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:08:09 Download gff for BO10833.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7536-PA 1266..2025 18..775 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:54:55 Download gff for BO10833.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7536-RA 1623..2384 13..775 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:58:49 Download gff for BO10833.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7536-RA 1623..2384 13..775 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:58:49 Download gff for BO10833.3prime
Subject Subject Range Query Range Percent Splice Strand
X 18080188..18080357 427..596 100 <- Plus
X 18080416..18080594 597..775 100   Plus
X 18079652..18079930 13..292 98 <- Plus
X 18079993..18080126 293..426 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:54:55 Download gff for BO10833.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 17974026..17974159 293..426 100 <- Plus
arm_X 17973685..17973963 13..292 98 <- Plus
arm_X 17974221..17974390 427..596 100 <- Plus
arm_X 17974449..17974627 597..775 100   Plus

BO10833.5prime Sequence

916 bp (877 high quality bases) assembled on 2006-04-19

> BO10833.5prime
GAAGTTATCAGTCGACATGAAATTCGCCGAGCACCTGTCGGCGCACATAA
CGCCCGAGTGGCGCAAACAATACATTAACTATGAGGAAATGAAGGCCATG
CTGTATTTGGCCGTGGAGGAGGCGCCATCGGTGGAGAGCGTCGAGGACGA
CGTGCTGAAGCGGCACTTCGCCAATTTCGATGAGAACTTCTTTCACTACT
GCGACAAGGAGCTAAAGAAGATCAATACGTTCTACTCGGAGAAGCTGGCG
GAGGCCACGCGAAAGTTTGCCACCCTGAATGCCGAACTGAAGACCTCCAT
CGAGGAGTCGGAGCGAAGTGCCAAGAAGTCCAAGGGACACAAACGACATG
CCGCCTTGCCGGATCGCAAGGCGCGCGAGCTGAAGTTGGCCTTCAGTGAG
TTCTACCTGAGTCTGATCCTCCTGCAGAACTATCAGAATCTGAATCACAC
CGGCTTTCGTAAAATACTCAAGAAGCACGATAAACTTTTGCGTGTGGACA
CCGGTGCCAAATGGAGGCAGGAGTATGTGGAGGCCTCACACTTCTTCACC
AACAAGGACATCGACAACATTATCAATGAGACGGAGACGACGGTCACCGG
CGAACTGGAAGGCGGCGATCGGCAGCGAGCGATGAAGAGATTGCGAGTAC
CACCGCTGGGCGAACAGCAGAGTCCATGGACCACGTTCAAGGTTGGCCTC
TTCTCCGGCAGCTTTATAGTGCTGGTCATTGTGGTCGTGGTGTCGGCCAT
CTTCCACGAGATTAGCGGCGAGAACCTCAAGGTTACGTTCCGACTCTACC
GCGGTCCCCTGCTAATCATCGAGTTCATCTTCCTCATCGGAGTGAACATC
TACGGCTGGCGGTCGTCTGGCGTTAATCATGTCCTGATCTTCGAGCTGGA
TCCGCGAAATCATCTA

BO10833.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:11:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG7536-PB 2025 CG7536-RB 1..900 17..916 4500 100 Plus
CG7536-PA 2025 CG7536-RA 1..900 17..916 4500 100 Plus
CG10483-PA 2016 CG10483-RA 1..90 17..106 275 92.2 Plus
CG10483-PA 2016 CG10483-RA 640..695 647..702 155 91 Plus
CG10483-PA 2016 CG10483-RA 154..197 170..213 145 93.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 04:49:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG7536-RD 3537 CG7536-RD 721..1621 16..916 4505 100 Plus
CG7536-RC 3494 CG7536-RC 306..1206 16..916 4505 100 Plus
CG7536-RA 3019 CG7536-RA 357..1257 16..916 4505 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 04:49:15
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18080960..18081391 916..485 2160 100 Minus
X 23542271 X 18081743..18082143 484..84 2005 100 Minus
3L 28110227 3L 5920070..5920445 758..383 380 73.4 Minus
X 23542271 X 18082218..18082288 86..16 355 100 Minus
3L 28110227 3L 5920582..5920753 255..84 290 77.9 Minus
3L 28110227 3L 5921136..5921209 86..13 265 90.5 Minus
Blast to na_te.dros performed on 2015-02-10 04:49:20 has no hits.

BO10833.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:50:38 Download gff for BO10833.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7536-PA 1..899 17..915 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:08:11 Download gff for BO10833.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7536-PA 1..899 17..915 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:47:22 Download gff for BO10833.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7536-RA 357..1256 16..915 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 07:24:55 Download gff for BO10833.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7536-RA 357..1256 16..915 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 07:24:55 Download gff for BO10833.5prime
Subject Subject Range Query Range Percent Splice Strand
X 18080961..18081391 485..915 100 <- Minus
X 18081743..18082141 86..484 100 <- Minus
X 18082219..18082288 16..85 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:47:22 Download gff for BO10833.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 17974994..17975424 485..915 100 <- Minus
arm_X 17975776..17976174 86..484 100 <- Minus
arm_X 17976252..17976321 16..85 100   Minus

BO10833.complete Sequence

2056 bp (2056 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ631889

> BO10833.complete
GAAGTTATCAGTCGACATGAAATTCGCCGAGCACCTGTCGGCGCACATAA
CGCCCGAGTGGCGCAAACAATACATTAACTATGAGGAAATGAAGGCCATG
CTGTATTTGGCCGTGGAGGAGGCGCCATCGGTGGAGAGCGTCGAGGACGA
CGTGCTGAAGCGGCACTTCGCCAATTTCGATGAGAACTTCTTTCACTACT
GCGACAAGGAGCTAAAGAAGATCAATACGTTCTACTCGGAGAAGCTGGCG
GAGGCCACGCGAAAGTTTGCCACCCTGAATGCCGAACTGAAGACCTCCAT
CGAGGAGTCGGAGCGAAGTGCCAAGAAGTCCAAGGGACACAAACGACATG
CCGCCTTGCCGGATCGCAAGGCGCGCGAGCTGAAGTTGGCCTTCAGTGAG
TTCTACCTGAGTCTGATCCTCCTGCAGAACTATCAGAATCTGAATCACAC
CGGCTTTCGTAAAATACTCAAGAAGCACGATAAACTTTTGCGTGTGGACA
CCGGTGCCAAATGGAGGCAGGAGTATGTGGAGGCCTCACACTTCTTCACC
AACAAGGACATCGACAACATTATCAATGAGACGGAGACGACGGTCACCGG
CGAACTGGAAGGCGGCGATCGGCAGCGAGCGATGAAGAGATTGCGAGTAC
CACCGCTGGGCGAACAGCAGAGTCCATGGACCACGTTCAAGGTTGGCCTC
TTCTCCGGCAGCTTTATAGTGCTGGTCATTGTGGTCGTGGTGTCGGCCAT
CTTCCACGAGATTAGCGGCGAGAACCTCAAGGTTACGTTCCGACTCTACC
GCGGTCCCCTGCTAATCATCGAGTTCATCTTCCTCATCGGAGTGAACATC
TACGGCTGGCGGTCGTCTGGCGTTAATCATGTCCTGATCTTCGAGCTGGA
TCCGCGAAATCATCTATCCGAGCAGCATCTCATGGAACTGGCGGCGATCT
TCGGCGTGATCTGGACACTCAGCATGCTGAGCTTTCTGTACAGCGCTAGC
TTGGCCATTCCGGCTTTCATCAATCCACTTACGCTTACGCTGATTATGGT
GCTGTTTTTGGCAAATCCGTTTCATGTGCTCTATCACGACGCACGATTCT
GGCTGTGGCGGATTACGGGACGATGTGTGTCGGCACCGTTCTTTCACGTG
GGCTTCGCGGATTTCTGGCTCGGCGATCAACTCAATTCGCTGGCCACGGC
TATCCTAGATTTCGAGTATCTCATATGCTTCTATTTCACAAATGGCAACT
GGACGGAGGCGAGGGATGCCTCCATTTGCATGGAGAAGGACTTTATCATC
CGGCCGATTGTTAATTGCCTGCCCGCCTGGTTTCGATTTGCACAATGCCT
GCGTCGATATCGCGACTCGCGGGAGGCATTTCCTCATTTGGTGAATGCTG
GCAAATACTCCACAACCTTCATGGTGGTGATCTTCGCCACGCTCAAGAGC
TTTCACAGTCCGAACTATGCCAGCACATTCGATAATCCCTATACCTGGTT
GTGGATTATCGCCTCGATTGTGTCCTCTTGCTACGCCTACACGTGGGATA
TCAAAATGGATTGGGGTCTGTTCGACAAGAACGCCGGCGAGAATACTTTC
CTGCGCGAGGAGGTTGTCTACTCATCGACGGGTTTTTACTACTTTGCCAT
TTTGGAGGATCTGGCGCTGCGCTTTATTTGGGCGCTGTCTTTCTACCTCA
CCGAGATGAAAATCGTTAGCTCAGACATAATGACCTCCGTCACAGGCATT
CTGGAGGTATTCCGTCGCTTTGTGTGGAACTTTTTCCGGTTGGAGAACGA
GCATCTGAACAACTGCGGTAAGTTCCGAGCCGTTCGTGACATCTCGATAG
CGCCGCTGGACTCCTCCGACCAGGCGCTCATCCTGCGCCTGATGGACGAG
GCTGACGGTGTGATCAATCGCTACACGAAGGCGAACCGACCTAAGCCCAA
GAAGGTTAAGGATCCGGAGAAGCGGAGCCTGCTGCAGACACGCGGATCGC
TGCCCGATCTCAGGATCGATATGGACAGTAAAAAATTGGCAAGCTTTCTA
GACCAT

BO10833.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:45:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG7536-RD 2025 CG7536-PD 1..2022 17..2038 10110 100 Plus
CG7536-RC 2025 CG7536-PC 1..2022 17..2038 10110 100 Plus
CG7536-RA 2025 CG7536-PA 1..2022 17..2038 10110 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:45:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG7536-RD 3537 CG7536-RD 721..2743 16..2038 10115 100 Plus
CG7536-RC 3494 CG7536-RC 306..2328 16..2038 10115 100 Plus
CG7536-RA 3019 CG7536-RA 357..2379 16..2038 10115 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:45:43
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18080416..18081391 1460..485 4880 100 Minus
X 23542271 X 18081743..18082143 484..84 2005 100 Minus
X 23542271 X 18079657..18079931 2038..1764 1375 100 Minus
X 23542271 X 18080187..18080357 1631..1461 855 100 Minus
X 23542271 X 18079993..18080127 1764..1630 675 100 Minus
3L 28110227 3L 5919889..5920445 942..383 420 72.5 Minus
X 23542271 X 18082218..18082288 86..16 355 100 Minus
3L 28110227 3L 5920582..5920753 255..84 290 77.9 Minus
3L 28110227 3L 5921136..5921209 86..13 265 90.5 Minus
3L 28110227 3L 5918754..5918856 1631..1529 230 81.6 Minus
Blast to na_te.dros performed on 2014-11-26 16:45:45 has no hits.

BO10833.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:46:32 Download gff for BO10833.complete
Subject Subject Range Query Range Percent Splice Strand
CG7536-RA 1..2025 17..2039 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:00:47 Download gff for BO10833.complete
Subject Subject Range Query Range Percent Splice Strand
CG7536-RB 259..2286 16..2044 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:09:09 Download gff for BO10833.complete
Subject Subject Range Query Range Percent Splice Strand
CG7536-RA 358..2379 17..2040 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:46:32 Download gff for BO10833.complete
Subject Subject Range Query Range Percent Splice Strand
CG7536-RA 357..2384 16..2044 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:26:54 Download gff for BO10833.complete
Subject Subject Range Query Range Percent Splice Strand
CG7536-RA 358..2379 17..2040 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:26:54 Download gff for BO10833.complete
Subject Subject Range Query Range Percent Splice Strand
X 18079655..18079930 1765..2040 99 <- Minus
X 18079993..18080126 1631..1764 100 <- Minus
X 18080188..18080357 1461..1630 100 <- Minus
X 18080416..18081391 485..1460 100 <- Minus
X 18081743..18082141 86..484 100 <- Minus
X 18082219..18082287 17..85 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:09:09 Download gff for BO10833.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 17974221..17974390 1461..1630 100 <- Minus
arm_X 17973688..17973963 1765..2040 99 <- Minus
arm_X 17974026..17974159 1631..1764 100 <- Minus
arm_X 17974449..17975424 485..1460 100 <- Minus
arm_X 17975776..17976174 86..484 100 <- Minus
arm_X 17976252..17976320 17..85 100   Minus

BO10833.pep Sequence

Translation from 16 to 2056

> BO10833.pep
MKFAEHLSAHITPEWRKQYINYEEMKAMLYLAVEEAPSVESVEDDVLKRH
FANFDENFFHYCDKELKKINTFYSEKLAEATRKFATLNAELKTSIEESER
SAKKSKGHKRHAALPDRKARELKLAFSEFYLSLILLQNYQNLNHTGFRKI
LKKHDKLLRVDTGAKWRQEYVEASHFFTNKDIDNIINETETTVTGELEGG
DRQRAMKRLRVPPLGEQQSPWTTFKVGLFSGSFIVLVIVVVVSAIFHEIS
GENLKVTFRLYRGPLLIIEFIFLIGVNIYGWRSSGVNHVLIFELDPRNHL
SEQHLMELAAIFGVIWTLSMLSFLYSASLAIPAFINPLTLTLIMVLFLAN
PFHVLYHDARFWLWRITGRCVSAPFFHVGFADFWLGDQLNSLATAILDFE
YLICFYFTNGNWTEARDASICMEKDFIIRPIVNCLPAWFRFAQCLRRYRD
SREAFPHLVNAGKYSTTFMVVIFATLKSFHSPNYASTFDNPYTWLWIIAS
IVSSCYAYTWDIKMDWGLFDKNAGENTFLREEVVYSSTGFYYFAILEDLA
LRFIWALSFYLTEMKIVSSDIMTSVTGILEVFRRFVWNFFRLENEHLNNC
GKFRAVRDISIAPLDSSDQALILRLMDEADGVINRYTKANRPKPKKVKDP
EKRSLLQTRGSLPDLRIDMDSKKLASFLDH

BO10833.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:51:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG7536-PD 674 CG7536-PD 1..674 1..674 3540 100 Plus
CG7536-PC 674 CG7536-PC 1..674 1..674 3540 100 Plus
CG7536-PA 674 CG7536-PA 1..674 1..674 3540 100 Plus
CG7536-PB 674 CG7536-PB 1..674 1..674 3540 100 Plus
CG10483-PA 671 CG10483-PA 1..669 1..665 2183 62.4 Plus