Clone Sequence Records
BO10833.3prime Sequence
776 bp (775 high quality bases) assembled on 2006-04-19
> BO10833.3prime
ATGGTCTAGAAAGCTTGCCAATTTTTTACTGTCCATATCGATCCTGAGAT
CGGGCAGCGATCCGCGTGTCTGCAGCAGGCTCCGCTTCTCCGGATCCTTA
ACCTTCTTGGGCTTAGGTCGGTTCGCCTTCGTGTAGCGATTGATCACACC
GTCAGCCTCGTCCATCAGGCGCAGGATGAGCGCCTGGTCGGAGGAGTCCA
GCGGCGCTATCGAGATGTCACGAACGGCTCGGAACTTACCGCAGTTGTTC
AGATGCTCGTTCTCCAACCGGAAAAAGTTCCACACAAAGCGACGGAATAC
CTCCAGAATGCCTGTGACGGAGGTCATTATGTCTGAGCTAACGATTTTCA
TCTCGGTGAGGTAGAAAGACAGCGCCCAAATAAAGCGCAGCGCCAGATCC
TCCAAAATGGCAAAGTAGTAAAAACCCGTCGATGAGTAGACAACCTCCTC
GCGCAGGAAAGTATTCTCGCCGGCGTTCTTGTCGAACAGACCCCAATCCA
TTTTGATATCCCACGTGTAGGCGTAGCAAGAGGACACAATCGAGGCGATA
ATCCACAACCAGGTATAGGGATTATCGAATGTGCTGGCATAGTTCGGACT
GTGAAAGCTCTTGAGCGTGGCGAAGATCACCACCATGAAGGTTGTGGAGT
ATTTGCCAGCATTCACCAAATGAGGAAATGCCTCCCGCGAGTCGCGATAT
CGACGCAGGCATTGTGCAAATCGAAACCAGGCGGGCAGGCAATTAACAAT
CGGCCGGATGATAAAGTCCTTCTCCA
BO10833.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:11:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7536-PB | 2025 | CG7536-RB | 1265..2022 | 776..19 | 3790 | 100 | Minus |
CG7536-PA | 2025 | CG7536-RA | 1265..2022 | 776..19 | 3790 | 100 | Minus |
CG10483-PA | 2016 | CG10483-RA | 1522..1569 | 528..481 | 140 | 91.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:07:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7536-RD | 3537 | CG7536-RD | 1986..2743 | 776..19 | 3790 | 100 | Minus |
CG7536-RC | 3494 | CG7536-RC | 1571..2328 | 776..19 | 3790 | 100 | Minus |
CG7536-RA | 3019 | CG7536-RA | 1622..2379 | 776..19 | 3790 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:07:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18079657..18079931 | 19..293 | 1375 | 100 | Plus |
X | 23542271 | X | 18080416..18080595 | 597..776 | 900 | 100 | Plus |
X | 23542271 | X | 18080187..18080357 | 426..596 | 855 | 100 | Plus |
X | 23542271 | X | 18079993..18080127 | 293..427 | 675 | 100 | Plus |
3L | 28110227 | 3L | 5918754..5918856 | 426..528 | 230 | 81.6 | Plus |
3L | 28110227 | 3L | 5918420..5918482 | 244..306 | 180 | 85.7 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:07:30 has no hits.
BO10833.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:50:37 Download gff for
BO10833.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7536-PA | 1266..2025 | 18..775 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:08:09 Download gff for
BO10833.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7536-PA | 1266..2025 | 18..775 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:54:55 Download gff for
BO10833.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7536-RA | 1623..2384 | 13..775 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:58:49 Download gff for
BO10833.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7536-RA | 1623..2384 | 13..775 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:58:49 Download gff for
BO10833.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18080188..18080357 | 427..596 | 100 | <- | Plus |
X | 18080416..18080594 | 597..775 | 100 | | Plus |
X | 18079652..18079930 | 13..292 | 98 | <- | Plus |
X | 18079993..18080126 | 293..426 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:54:55 Download gff for
BO10833.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17974026..17974159 | 293..426 | 100 | <- | Plus |
arm_X | 17973685..17973963 | 13..292 | 98 | <- | Plus |
arm_X | 17974221..17974390 | 427..596 | 100 | <- | Plus |
arm_X | 17974449..17974627 | 597..775 | 100 | | Plus |
BO10833.5prime Sequence
916 bp (877 high quality bases) assembled on 2006-04-19
> BO10833.5prime
GAAGTTATCAGTCGACATGAAATTCGCCGAGCACCTGTCGGCGCACATAA
CGCCCGAGTGGCGCAAACAATACATTAACTATGAGGAAATGAAGGCCATG
CTGTATTTGGCCGTGGAGGAGGCGCCATCGGTGGAGAGCGTCGAGGACGA
CGTGCTGAAGCGGCACTTCGCCAATTTCGATGAGAACTTCTTTCACTACT
GCGACAAGGAGCTAAAGAAGATCAATACGTTCTACTCGGAGAAGCTGGCG
GAGGCCACGCGAAAGTTTGCCACCCTGAATGCCGAACTGAAGACCTCCAT
CGAGGAGTCGGAGCGAAGTGCCAAGAAGTCCAAGGGACACAAACGACATG
CCGCCTTGCCGGATCGCAAGGCGCGCGAGCTGAAGTTGGCCTTCAGTGAG
TTCTACCTGAGTCTGATCCTCCTGCAGAACTATCAGAATCTGAATCACAC
CGGCTTTCGTAAAATACTCAAGAAGCACGATAAACTTTTGCGTGTGGACA
CCGGTGCCAAATGGAGGCAGGAGTATGTGGAGGCCTCACACTTCTTCACC
AACAAGGACATCGACAACATTATCAATGAGACGGAGACGACGGTCACCGG
CGAACTGGAAGGCGGCGATCGGCAGCGAGCGATGAAGAGATTGCGAGTAC
CACCGCTGGGCGAACAGCAGAGTCCATGGACCACGTTCAAGGTTGGCCTC
TTCTCCGGCAGCTTTATAGTGCTGGTCATTGTGGTCGTGGTGTCGGCCAT
CTTCCACGAGATTAGCGGCGAGAACCTCAAGGTTACGTTCCGACTCTACC
GCGGTCCCCTGCTAATCATCGAGTTCATCTTCCTCATCGGAGTGAACATC
TACGGCTGGCGGTCGTCTGGCGTTAATCATGTCCTGATCTTCGAGCTGGA
TCCGCGAAATCATCTA
BO10833.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:11:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7536-PB | 2025 | CG7536-RB | 1..900 | 17..916 | 4500 | 100 | Plus |
CG7536-PA | 2025 | CG7536-RA | 1..900 | 17..916 | 4500 | 100 | Plus |
CG10483-PA | 2016 | CG10483-RA | 1..90 | 17..106 | 275 | 92.2 | Plus |
CG10483-PA | 2016 | CG10483-RA | 640..695 | 647..702 | 155 | 91 | Plus |
CG10483-PA | 2016 | CG10483-RA | 154..197 | 170..213 | 145 | 93.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 04:49:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7536-RD | 3537 | CG7536-RD | 721..1621 | 16..916 | 4505 | 100 | Plus |
CG7536-RC | 3494 | CG7536-RC | 306..1206 | 16..916 | 4505 | 100 | Plus |
CG7536-RA | 3019 | CG7536-RA | 357..1257 | 16..916 | 4505 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 04:49:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18080960..18081391 | 916..485 | 2160 | 100 | Minus |
X | 23542271 | X | 18081743..18082143 | 484..84 | 2005 | 100 | Minus |
3L | 28110227 | 3L | 5920070..5920445 | 758..383 | 380 | 73.4 | Minus |
X | 23542271 | X | 18082218..18082288 | 86..16 | 355 | 100 | Minus |
3L | 28110227 | 3L | 5920582..5920753 | 255..84 | 290 | 77.9 | Minus |
3L | 28110227 | 3L | 5921136..5921209 | 86..13 | 265 | 90.5 | Minus |
Blast to na_te.dros performed on 2015-02-10 04:49:20 has no hits.
BO10833.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:50:38 Download gff for
BO10833.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7536-PA | 1..899 | 17..915 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:08:11 Download gff for
BO10833.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7536-PA | 1..899 | 17..915 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:47:22 Download gff for
BO10833.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7536-RA | 357..1256 | 16..915 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 07:24:55 Download gff for
BO10833.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7536-RA | 357..1256 | 16..915 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 07:24:55 Download gff for
BO10833.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18080961..18081391 | 485..915 | 100 | <- | Minus |
X | 18081743..18082141 | 86..484 | 100 | <- | Minus |
X | 18082219..18082288 | 16..85 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:47:22 Download gff for
BO10833.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17974994..17975424 | 485..915 | 100 | <- | Minus |
arm_X | 17975776..17976174 | 86..484 | 100 | <- | Minus |
arm_X | 17976252..17976321 | 16..85 | 100 | | Minus |
BO10833.complete Sequence
2056 bp (2056 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631889
> BO10833.complete
GAAGTTATCAGTCGACATGAAATTCGCCGAGCACCTGTCGGCGCACATAA
CGCCCGAGTGGCGCAAACAATACATTAACTATGAGGAAATGAAGGCCATG
CTGTATTTGGCCGTGGAGGAGGCGCCATCGGTGGAGAGCGTCGAGGACGA
CGTGCTGAAGCGGCACTTCGCCAATTTCGATGAGAACTTCTTTCACTACT
GCGACAAGGAGCTAAAGAAGATCAATACGTTCTACTCGGAGAAGCTGGCG
GAGGCCACGCGAAAGTTTGCCACCCTGAATGCCGAACTGAAGACCTCCAT
CGAGGAGTCGGAGCGAAGTGCCAAGAAGTCCAAGGGACACAAACGACATG
CCGCCTTGCCGGATCGCAAGGCGCGCGAGCTGAAGTTGGCCTTCAGTGAG
TTCTACCTGAGTCTGATCCTCCTGCAGAACTATCAGAATCTGAATCACAC
CGGCTTTCGTAAAATACTCAAGAAGCACGATAAACTTTTGCGTGTGGACA
CCGGTGCCAAATGGAGGCAGGAGTATGTGGAGGCCTCACACTTCTTCACC
AACAAGGACATCGACAACATTATCAATGAGACGGAGACGACGGTCACCGG
CGAACTGGAAGGCGGCGATCGGCAGCGAGCGATGAAGAGATTGCGAGTAC
CACCGCTGGGCGAACAGCAGAGTCCATGGACCACGTTCAAGGTTGGCCTC
TTCTCCGGCAGCTTTATAGTGCTGGTCATTGTGGTCGTGGTGTCGGCCAT
CTTCCACGAGATTAGCGGCGAGAACCTCAAGGTTACGTTCCGACTCTACC
GCGGTCCCCTGCTAATCATCGAGTTCATCTTCCTCATCGGAGTGAACATC
TACGGCTGGCGGTCGTCTGGCGTTAATCATGTCCTGATCTTCGAGCTGGA
TCCGCGAAATCATCTATCCGAGCAGCATCTCATGGAACTGGCGGCGATCT
TCGGCGTGATCTGGACACTCAGCATGCTGAGCTTTCTGTACAGCGCTAGC
TTGGCCATTCCGGCTTTCATCAATCCACTTACGCTTACGCTGATTATGGT
GCTGTTTTTGGCAAATCCGTTTCATGTGCTCTATCACGACGCACGATTCT
GGCTGTGGCGGATTACGGGACGATGTGTGTCGGCACCGTTCTTTCACGTG
GGCTTCGCGGATTTCTGGCTCGGCGATCAACTCAATTCGCTGGCCACGGC
TATCCTAGATTTCGAGTATCTCATATGCTTCTATTTCACAAATGGCAACT
GGACGGAGGCGAGGGATGCCTCCATTTGCATGGAGAAGGACTTTATCATC
CGGCCGATTGTTAATTGCCTGCCCGCCTGGTTTCGATTTGCACAATGCCT
GCGTCGATATCGCGACTCGCGGGAGGCATTTCCTCATTTGGTGAATGCTG
GCAAATACTCCACAACCTTCATGGTGGTGATCTTCGCCACGCTCAAGAGC
TTTCACAGTCCGAACTATGCCAGCACATTCGATAATCCCTATACCTGGTT
GTGGATTATCGCCTCGATTGTGTCCTCTTGCTACGCCTACACGTGGGATA
TCAAAATGGATTGGGGTCTGTTCGACAAGAACGCCGGCGAGAATACTTTC
CTGCGCGAGGAGGTTGTCTACTCATCGACGGGTTTTTACTACTTTGCCAT
TTTGGAGGATCTGGCGCTGCGCTTTATTTGGGCGCTGTCTTTCTACCTCA
CCGAGATGAAAATCGTTAGCTCAGACATAATGACCTCCGTCACAGGCATT
CTGGAGGTATTCCGTCGCTTTGTGTGGAACTTTTTCCGGTTGGAGAACGA
GCATCTGAACAACTGCGGTAAGTTCCGAGCCGTTCGTGACATCTCGATAG
CGCCGCTGGACTCCTCCGACCAGGCGCTCATCCTGCGCCTGATGGACGAG
GCTGACGGTGTGATCAATCGCTACACGAAGGCGAACCGACCTAAGCCCAA
GAAGGTTAAGGATCCGGAGAAGCGGAGCCTGCTGCAGACACGCGGATCGC
TGCCCGATCTCAGGATCGATATGGACAGTAAAAAATTGGCAAGCTTTCTA
GACCAT
BO10833.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:45:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7536-RD | 2025 | CG7536-PD | 1..2022 | 17..2038 | 10110 | 100 | Plus |
CG7536-RC | 2025 | CG7536-PC | 1..2022 | 17..2038 | 10110 | 100 | Plus |
CG7536-RA | 2025 | CG7536-PA | 1..2022 | 17..2038 | 10110 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:45:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7536-RD | 3537 | CG7536-RD | 721..2743 | 16..2038 | 10115 | 100 | Plus |
CG7536-RC | 3494 | CG7536-RC | 306..2328 | 16..2038 | 10115 | 100 | Plus |
CG7536-RA | 3019 | CG7536-RA | 357..2379 | 16..2038 | 10115 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:45:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18080416..18081391 | 1460..485 | 4880 | 100 | Minus |
X | 23542271 | X | 18081743..18082143 | 484..84 | 2005 | 100 | Minus |
X | 23542271 | X | 18079657..18079931 | 2038..1764 | 1375 | 100 | Minus |
X | 23542271 | X | 18080187..18080357 | 1631..1461 | 855 | 100 | Minus |
X | 23542271 | X | 18079993..18080127 | 1764..1630 | 675 | 100 | Minus |
3L | 28110227 | 3L | 5919889..5920445 | 942..383 | 420 | 72.5 | Minus |
X | 23542271 | X | 18082218..18082288 | 86..16 | 355 | 100 | Minus |
3L | 28110227 | 3L | 5920582..5920753 | 255..84 | 290 | 77.9 | Minus |
3L | 28110227 | 3L | 5921136..5921209 | 86..13 | 265 | 90.5 | Minus |
3L | 28110227 | 3L | 5918754..5918856 | 1631..1529 | 230 | 81.6 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:45:45 has no hits.
BO10833.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:46:32 Download gff for
BO10833.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7536-RA | 1..2025 | 17..2039 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:00:47 Download gff for
BO10833.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7536-RB | 259..2286 | 16..2044 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:09:09 Download gff for
BO10833.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7536-RA | 358..2379 | 17..2040 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:46:32 Download gff for
BO10833.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7536-RA | 357..2384 | 16..2044 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:26:54 Download gff for
BO10833.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7536-RA | 358..2379 | 17..2040 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:26:54 Download gff for
BO10833.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18079655..18079930 | 1765..2040 | 99 | <- | Minus |
X | 18079993..18080126 | 1631..1764 | 100 | <- | Minus |
X | 18080188..18080357 | 1461..1630 | 100 | <- | Minus |
X | 18080416..18081391 | 485..1460 | 100 | <- | Minus |
X | 18081743..18082141 | 86..484 | 100 | <- | Minus |
X | 18082219..18082287 | 17..85 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:09:09 Download gff for
BO10833.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17974221..17974390 | 1461..1630 | 100 | <- | Minus |
arm_X | 17973688..17973963 | 1765..2040 | 99 | <- | Minus |
arm_X | 17974026..17974159 | 1631..1764 | 100 | <- | Minus |
arm_X | 17974449..17975424 | 485..1460 | 100 | <- | Minus |
arm_X | 17975776..17976174 | 86..484 | 100 | <- | Minus |
arm_X | 17976252..17976320 | 17..85 | 100 | | Minus |
BO10833.pep Sequence
Translation from 16 to 2056
> BO10833.pep
MKFAEHLSAHITPEWRKQYINYEEMKAMLYLAVEEAPSVESVEDDVLKRH
FANFDENFFHYCDKELKKINTFYSEKLAEATRKFATLNAELKTSIEESER
SAKKSKGHKRHAALPDRKARELKLAFSEFYLSLILLQNYQNLNHTGFRKI
LKKHDKLLRVDTGAKWRQEYVEASHFFTNKDIDNIINETETTVTGELEGG
DRQRAMKRLRVPPLGEQQSPWTTFKVGLFSGSFIVLVIVVVVSAIFHEIS
GENLKVTFRLYRGPLLIIEFIFLIGVNIYGWRSSGVNHVLIFELDPRNHL
SEQHLMELAAIFGVIWTLSMLSFLYSASLAIPAFINPLTLTLIMVLFLAN
PFHVLYHDARFWLWRITGRCVSAPFFHVGFADFWLGDQLNSLATAILDFE
YLICFYFTNGNWTEARDASICMEKDFIIRPIVNCLPAWFRFAQCLRRYRD
SREAFPHLVNAGKYSTTFMVVIFATLKSFHSPNYASTFDNPYTWLWIIAS
IVSSCYAYTWDIKMDWGLFDKNAGENTFLREEVVYSSTGFYYFAILEDLA
LRFIWALSFYLTEMKIVSSDIMTSVTGILEVFRRFVWNFFRLENEHLNNC
GKFRAVRDISIAPLDSSDQALILRLMDEADGVINRYTKANRPKPKKVKDP
EKRSLLQTRGSLPDLRIDMDSKKLASFLDH
BO10833.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:51:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7536-PD | 674 | CG7536-PD | 1..674 | 1..674 | 3540 | 100 | Plus |
CG7536-PC | 674 | CG7536-PC | 1..674 | 1..674 | 3540 | 100 | Plus |
CG7536-PA | 674 | CG7536-PA | 1..674 | 1..674 | 3540 | 100 | Plus |
CG7536-PB | 674 | CG7536-PB | 1..674 | 1..674 | 3540 | 100 | Plus |
CG10483-PA | 671 | CG10483-PA | 1..669 | 1..665 | 2183 | 62.4 | Plus |