Clone BO10834 Report

Search the DGRC for BO10834

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:108
Well:34
Vector:pDNR-Dual
Associated Gene/TranscriptCG3409-RA
Protein status:BO10834.pep:
Sequenced Size:2716

Clone Sequence Records

BO10834.5prime Sequence

927 bp (878 high quality bases) assembled on 2006-04-19

> BO10834.5prime
GAAGTTATCAGTCGACATGGCCAAGCTAGCGACGGATCCAAACGCCTCCA
ACAACAACAGCTGCGAGGCGGTTAACAACAACCACAATGGCCAGAACCAG
AGCCAAAACGGAGGCGCCTCCAATTACCAGGCCCTGCCTCTTACGCCTGC
TCCGGCCAACACGCCACTCCACAAGGCCATCAAGCACGACCTCTTCCCGG
AGGTCACCTTCTGCAACCTCTCCGTAGAGGAGCTCGCAGATGGGGCTGGA
CACAGCCGTGTGGTAAGGAGCAGTGTCATCGAACTGGAGGACGGCACCAT
GACGTGCCTGATGAACGGAAATGGGCAGGTGAAGCGTCGCAAACGCCTGA
TCTCGAACGAGTCCGGCGACTCGATCGACTCCAGTTCCACGGAGAAGAAA
ACGCCCAAGATGCCCGACGGTGGATATGGGTGGGTGGTGGTGTTCGCCTC
TCTGGTCGTGTCCCTTATAGCCGACGGACTGAGCTTCTCATTTGGCCTAA
TAAACGTGGAACTGCTGGAATACTTCGGAGAGTCCACTTCGAAGACCGCC
TGGATATCCTCGCTATTCTTCTCCGTGCCCCTGTTGATGGGACCCATCTG
GTCCAATCTGGTGGACAAGTACGGCTGCCGAAAGATGACCATCCTCGGCG
GAGTGGTCTCTGCCTTTGGGTTTGCTCTGTCTTCGTTTTGCAACTCGATC
GAGATGCTCATGGTGACCTTTGGTATCATTTCGGGACTGGGCCTAGGCAT
CGGGTATGTGACCGCGGTGGTGTCCATTGCATTCTGGTTTGACAAGAAGC
GCACCTTTGCGACCGGCATCGGAGCATCGGGCACCGGCATCGGGACCTTT
GTCTACGCCCGCCTTACTTCCTATCTAATCGAATCGTACGGCTGGCGCGG
AGCCACTCTAATCCTTGGCGGCACATG

BO10834.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:11:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG3409-PA 2685 CG3409-RA 1..908 17..924 4540 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:49:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG45092-RF 5152 CG45092-RF 1486..2397 13..924 4560 100 Plus
CG45092-RE 4496 CG45092-RE 1356..2267 13..924 4560 100 Plus
CG45092-RD 5083 CG45092-RD 1943..2854 13..924 4560 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:49:14
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6703486..6704397 924..13 4560 100 Minus
Blast to na_te.dros performed 2015-02-10 23:49:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1498..1587 26..115 126 60 Plus
invader2 5124 invader2 INVADER2 5124bp 677..747 43..116 111 63.5 Plus

BO10834.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:50:40 Download gff for BO10834.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3409-PA 1..912 17..927 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:08:14 Download gff for BO10834.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3409-PA 1..912 17..927 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:28:29 Download gff for BO10834.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3409-RA 1943..2858 13..927 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:13:17 Download gff for BO10834.5prime
Subject Subject Range Query Range Percent Splice Strand
CG45092-RD 1943..2858 13..927 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:13:17 Download gff for BO10834.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 6703482..6704397 13..927 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:28:29 Download gff for BO10834.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2590987..2591902 13..927 99   Minus

BO10834.3prime Sequence

856 bp (855 high quality bases) assembled on 2006-04-19

> BO10834.3prime
ATGGTCTAGAAAGCTTGCGTGTAAAAGTTGAGCTTTTTTAGTCTCTAAGA
CATCACTATCACTCTCCTTAGGTGCTTTCTTTTCACAGAACTCGATCAGA
TACGAACAGACACCAGAGAGTGCGATAAATATTCCAGCATAATAGAAGGT
GTCATCCCATCTGCCCGTATACTCGTATATGACGCCTGCAATAGGGGGTC
CTGCGATCATTCCAACTCCCTGAACCAGCAGCACCAGACCGTAGGCACAC
GTGAAATCGTCCAGATCCACAATACTGACCAGAATGCTGGGCGTAAACGA
GAAGGAGCTGGCGAACGTAAATCCGAAAATAACGCACATGACCATCAGGC
CCATGTAGTTGGTAATCAGCAGGGGCATGAAGAACACAGACGCTCCGCAC
ACCAGCATGCACAGCGAGTAGCATATATTGATGTTCATCCAGGACAGATC
CCCCAGATAGCCAAGTCCTATCATGCCCACCGTTTGGGCAATGCCGACAT
CCGAAATCAACTCGGCACTCTGGCTCACGTCGTACTTGTATTGCTTCATG
TAATCGGGAAGGTACAGATAGGGGATAATGAACCAAATGAACAAAAACAA
TGTAGAGAGATTGAAGAGGGCGAACTTCATGTCCAGAAAGAGTGAAAAGT
CAAAGATGGACTTCATGGTGTCCACAAAGTTGTCATACCAGGTATCTTCC
TCCTCTTTGGCGATGGTGGTCATCGAGTTGCGGTAGATGTTGGGACAGGA
GGAGGCGCGCAGCCGGTAGCGGTGCGTGTTCAGCATGGCCCCGCGGTAGT
GGATCGAGTTGCGGTGAATGCGCATATCCTTAAGGAAGTTGGAGTTCCGG
ATCGAG

BO10834.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:11:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG3409-PA 2685 CG3409-RA 1845..2682 856..19 4190 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:42:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG45092-RF 5152 CG45092-RF 3334..4171 856..19 4190 100 Minus
CG45092-RE 4496 CG45092-RE 3204..4041 856..19 4190 100 Minus
CG45092-RD 5083 CG45092-RD 3791..4628 856..19 4190 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:42:05
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6700882..6701123 161..402 1210 100 Plus
2R 25286936 2R 6701190..6701372 402..584 915 100 Plus
2R 25286936 2R 6702387..6702549 694..856 815 100 Plus
2R 25286936 2R 6700676..6700820 19..163 725 100 Plus
2R 25286936 2R 6701811..6701922 582..693 560 100 Plus
Blast to na_te.dros performed on 2015-02-12 10:42:07 has no hits.

BO10834.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:50:39 Download gff for BO10834.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3409-PA 1845..2685 18..856 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:08:12 Download gff for BO10834.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3409-PA 1845..2685 18..856 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 02:03:10 Download gff for BO10834.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3409-RA 3791..4634 11..856 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:23:08 Download gff for BO10834.3prime
Subject Subject Range Query Range Percent Splice Strand
CG45092-RD 3791..4634 11..856 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:23:08 Download gff for BO10834.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 6702387..6702549 694..856 100   Plus
2R 6700670..6700817 11..160 97 <- Plus
2R 6700882..6701122 161..401 100 <- Plus
2R 6701190..6701371 402..583 100 <- Plus
2R 6701813..6701922 584..693 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 02:03:10 Download gff for BO10834.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2588175..2588322 11..160 97 <- Plus
arm_2R 2588387..2588627 161..401 100 <- Plus
arm_2R 2588695..2588876 402..583 100 <- Plus
arm_2R 2589318..2589427 584..693 100 <- Plus
arm_2R 2589892..2590054 694..856 100   Plus

BO10834.complete Sequence

2716 bp assembled on 2008-01-16

GenBank Submission: FJ631890

> BO10834.complete
GAAGTTATCAGTCGACATGGCCAAGCTAGCGACGGATCCAAACGCCTCCA
ACAACAACAGCTGCGAGGCGGTTAACAACAACCACAATGGCCAGAACCAG
AGCCAAAACGGAGGCGCCTCCAATTACCAGGCCCTGCCTCTTACGCCTGC
TCCGGCCAACACGCCACTCCACAAGGCCATCAAGCACGACCTCTTCCCGG
AGGTCACCTTCTGCAACCTCTCCGTAGAGGAGCTCGCAGATGGGGCTGGA
CACAGCCGTGTGGTAAGGAGCAGTGTCATCGAACTGGAGGACGGCACCAT
GACGTGCCTGATGAACGGAAATGGGCAGGTGAAGCGTCGCAAACGCCTGA
TCTCGAACGAGTCCGGCGACTCGATCGACTCCAGTTCCACGGAGAAGAAA
ACGCCCAAGATGCCCGACGGTGGATATGGGTGGGTGGTGGTGTTCGCCTC
TCTGGTCGTGTCCCTTATAGCCGACGGACTGAGCTTCTCATTTGGCCTAA
TAAACGTGGAACTGCTGGAATACTTCGGAGAGTCCACTTCGAAGACCGCC
TGGATATCCTCGCTATTCTTCTCCGTGCCCCTGTTGATGGGACCCATCTG
GTCCAATCTGGTGGACAAGTACGGCTGCCGAAAGATGACCATCCTCGGCG
GAGTGGTCTCTGCCTTTGGGTTTGCTCTGTCTTCGTTTTGCAACTCGATC
GAGATGCTCATGGTGACCTTTGGTATCATTTCGGGACTGGGCCTAGGCAT
CGGGTATGTGACCGCGGTGGTGTCCATTGCATTCTGGTTTGACAAGAAGC
GCACCTTTGCGACCGGCATCGGAGCATCGGGCACCGGCATCGGGACCTTT
GTCTACGCCCGCCTTACTTCCTATCTAATCGAATCGTACGGCTGGCGCGG
AGCCACTCTAATCCTTGGCGGCACCATGCTCAACGCATGCGTTTGCGGCG
CCCTCATGCGCGATCCCGACTGGCTGATCGAGGAAAACCGTCTAGAGAGT
CGATCCCAAAGCGTCACCACCTTCTCGAACTCCAGTGTCTGCCTGGAGGA
AATAAAAAAGCTGCTGGACACCGGCATCACAAAGGAGGCTGTGCTAGACT
CGTTGGTGACCAAGAACAACACGGAGGCCAACCAGCAGATTGACGATCCG
TTGGACTCCGCTCTCAAGCGCTACCGCAGCGAGATCTTCCTGCCCACCTT
CCTGAGCACTCAGGAGCTTGACAGCATCTGCGAGGTTAAGAGCCTGAGCC
GACGCTCCCTACGCCACAAGGAGGGTGAGGAGGCGCCGTCACGAGAGAAC
CTGCTGTCCATGTCCTCAGGAGCAGGTGCCTATCCCCCATCGACGGCCGT
TATAGGCTCGCCAGATGATACCCTAATGGGCGGAATAGCTCACGAGGCGG
CAGAGGAAGCAAAGAAGGCCTATCTGGCCTCCATCGAGACGCTGTCTCCA
TCGGAAAAGCGCTCCACTGGTAGGACTCCCAATGGCTCGCTCCGCTCCTC
GGACGAAGGCTACCTTACGCAGAAGCACGCCAGCTCCCGGTACTCGCTTA
ACGAAAACATCTTCATGGCCAAGCATACAACACCATCAATCTCCAACCTA
AAGGTGAATGGCCTGCGACACAATTCGGTGGACATCTTGAGCGAGGACAT
GCACTGCTACTACTCGAAGGACGAGACCTTCGCATTGCTGGAGCCGAGCA
GGCGCATCAGGCCCACCGTCATCGCCATTCCGGAACAGGAGCAGTCGGTG
AACAGCGAGCTGGCCACCCGTCGCGCACGCCTGGACAGCATCACGGGAAT
CCGCCGGCTGTCGCGCTCCAAGAAGCCCAGCCACCACCGATCGAACCTCC
GCCGCAACATCTCGATCCGGAACTCCAACTTCCTTAAGGATATGCGCATT
CACCGCAACTCGATCCACTACCGCGGGGCCATGCTGAACACGCACCGCTA
CCGGCTGCGCGCCTCCTCCTGTCCCAACATCTACCGCAACTCGATGACCA
CCATCGCCAAAGAGGAGGAAGATACCTGGTATGACAACTTTGTGGACACC
ATGAAGTCCATCTTTGACTTTTCACTCTTTCTGGACATGAAGTTCGCCCT
CTTCAATCTCTCTACATTGTTTTTGTTCATTTGGTTCATTATCCCCTATC
TGTACCTTCCCGATTACATGAAGCAATACAAGTACGACGTGAGCCAGAGT
GCCGAGTTGATTTCGGATGTCGGCATTGCCCAAACGGTGGGCATGATAGG
ACTTGGCTATCTGGGGGATCTGTCCTGGATGAACATCAATATATGCTACT
CGCTGTGCATGCTGGTGTGCGGAGCGTCTGTGTTCTTCATGCCCCTGCTG
ATTACCAACTACATGGGCCTGATGGTCATGTGCGTTATTTTCGGATTTAC
GTTCGCCAGCTCCTTCTCGTTTACGCCCAGCATTCTGGTCAGTATTGTGG
ATCTGGACGATTTCACGTGTGCCTACGGTCTGGTGCTGCTGGTTCAGGGA
GTTGGAATGATCGCAGGACCCCCTATTGCAGGCGTCATATACGAGTATAC
GGGCAGATGGGATGACACCTTCTATTATGCTGGAATATTTATCGCACTCT
CTGGTGTCTGTTCGTATCTGATCGAGTTCTGTGAAAAGAAAGCACCTAAG
GAGAGTGATAGTGATGTCTTAGAGACTAAAAAAGCTCAACTTTTACACGC
AAGCTTTCTAGACCAT

BO10834.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:33:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG3409-RC 2685 CG3409-PC 1..2682 17..2698 13410 100 Plus
CG3409-RB 2685 CG3409-PB 1..2682 17..2698 13410 100 Plus
CG3409-RA 2685 CG3409-PA 1..2682 17..2698 13410 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:33:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG45092-RF 5152 CG45092-RF 1486..4171 13..2698 13430 100 Plus
CG45092-RE 4496 CG45092-RE 1356..4041 13..2698 13430 100 Plus
CG45092-RD 5083 CG45092-RD 1943..4628 13..2698 13430 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:33:48
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6702387..6704397 2023..13 10055 100 Minus
2R 25286936 2R 6700882..6701123 2556..2315 1210 100 Minus
2R 25286936 2R 6701190..6701372 2315..2133 915 100 Minus
2R 25286936 2R 6700676..6700820 2698..2554 725 100 Minus
2R 25286936 2R 6701811..6701922 2135..2024 560 100 Minus
Blast to na_te.dros performed 2014-11-28 00:33:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1498..1587 26..115 126 60 Plus

BO10834.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:56:47 Download gff for BO10834.complete
Subject Subject Range Query Range Percent Splice Strand
CG3409-RA 1..2685 17..2699 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:31:12 Download gff for BO10834.complete
Subject Subject Range Query Range Percent Splice Strand
CG3409-RA 1920..4601 17..2700 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:54:44 Download gff for BO10834.complete
Subject Subject Range Query Range Percent Splice Strand
CG3409-RA 1947..4628 17..2700 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:56:47 Download gff for BO10834.complete
Subject Subject Range Query Range Percent Splice Strand
CG3409-RA 1916..4607 13..2706 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:22:40 Download gff for BO10834.complete
Subject Subject Range Query Range Percent Splice Strand
CG45092-RD 1947..4628 17..2700 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:22:40 Download gff for BO10834.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6700674..6700817 2557..2700 98 <- Minus
2R 6700882..6701122 2316..2556 100 <- Minus
2R 6701190..6701371 2134..2315 100 <- Minus
2R 6701813..6701922 2024..2133 100 <- Minus
2R 6702387..6704393 17..2023 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:54:44 Download gff for BO10834.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2588179..2588322 2557..2700 98 <- Minus
arm_2R 2588387..2588627 2316..2556 100 <- Minus
arm_2R 2588695..2588876 2134..2315 100 <- Minus
arm_2R 2589318..2589427 2024..2133 100 <- Minus
arm_2R 2589892..2591898 17..2023 100   Minus

BO10834.pep Sequence

Translation from 16 to 2716

> BO10834.pep
MAKLATDPNASNNNSCEAVNNNHNGQNQSQNGGASNYQALPLTPAPANTP
LHKAIKHDLFPEVTFCNLSVEELADGAGHSRVVRSSVIELEDGTMTCLMN
GNGQVKRRKRLISNESGDSIDSSSTEKKTPKMPDGGYGWVVVFASLVVSL
IADGLSFSFGLINVELLEYFGESTSKTAWISSLFFSVPLLMGPIWSNLVD
KYGCRKMTILGGVVSAFGFALSSFCNSIEMLMVTFGIISGLGLGIGYVTA
VVSIAFWFDKKRTFATGIGASGTGIGTFVYARLTSYLIESYGWRGATLIL
GGTMLNACVCGALMRDPDWLIEENRLESRSQSVTTFSNSSVCLEEIKKLL
DTGITKEAVLDSLVTKNNTEANQQIDDPLDSALKRYRSEIFLPTFLSTQE
LDSICEVKSLSRRSLRHKEGEEAPSRENLLSMSSGAGAYPPSTAVIGSPD
DTLMGGIAHEAAEEAKKAYLASIETLSPSEKRSTGRTPNGSLRSSDEGYL
TQKHASSRYSLNENIFMAKHTTPSISNLKVNGLRHNSVDILSEDMHCYYS
KDETFALLEPSRRIRPTVIAIPEQEQSVNSELATRRARLDSITGIRRLSR
SKKPSHHRSNLRRNISIRNSNFLKDMRIHRNSIHYRGAMLNTHRYRLRAS
SCPNIYRNSMTTIAKEEEDTWYDNFVDTMKSIFDFSLFLDMKFALFNLST
LFLFIWFIIPYLYLPDYMKQYKYDVSQSAELISDVGIAQTVGMIGLGYLG
DLSWMNINICYSLCMLVCGASVFFMPLLITNYMGLMVMCVIFGFTFASSF
SFTPSILVSIVDLDDFTCAYGLVLLVQGVGMIAGPPIAGVIYEYTGRWDD
TFYYAGIFIALSGVCSYLIEFCEKKAPKESDSDVLETKKAQLLHASFLDH

BO10834.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:22:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG3409-PC 894 CG3409-PC 1..894 1..894 4615 100 Plus
CG3409-PB 894 CG3409-PB 1..894 1..894 4615 100 Plus
CG3409-PA 894 CG3409-PA 1..894 1..894 4615 100 Plus
Mct1-PB 626 CG3456-PB 3..211 102..315 490 43.5 Plus
Mct1-PA 626 CG3456-PA 3..211 102..315 490 43.5 Plus
Mct1-PB 626 CG3456-PB 412..615 677..881 376 37.1 Plus