Clone Sequence Records
BO10845.3prime Sequence
925 bp (825 high quality bases) assembled on 2006-04-19
> BO10845.3prime
ATGGTCTAGAAAGCTTGCATAATTACACCACTTCTGCAGGTTGTCCGTTT
CATCTTCCTCCTCGTCGCTAGTCGAGGGCGGTGTATCCAGATTGGCGATA
TCCACATCGAGGTAGTCCTCCTTCGTCTGGAGCAGCTTGTCCATATACTC
AACAATTTCCGTAAAAGGTGGCCGATCGTCGGCGTTGAAATGCCAACATT
GTCGCATCAGAATGTAGATGTTCATGGAGCATTTCGCTGGTTTCTCCATC
CGCTGACCGGACATGAGATAGGTGTACAGCTCCTCAGCGGACATGATAGT
TGGATATGGTTGCTGCCCATAGGTCATGATCTCCCACAGCAGGATGCCAT
ATGACCAGACATCGCTCTTGGAATCATAGAATTTCTCCTGCAGCGACTCC
GGTGCCATCCATTTGATGGGTAGCCTGCCATTTGTGTTCTTCCGATAGTA
ATCCGTGCTTTGAATGTCCCTCGCCAGTCCAAAATCAGCAATCTTCAGCA
CATAATCATCGCTGACGAGCACATTCCTGGCTGCCAAATCTCGATGGATG
CATCGCCGCGAGGCCAAATAGTCCATTCCTCTGGCAATTTGGTGGGCAAA
TTTGATCAGATCCTTTTCGGTTATCACATGAGCTGGTGGCGATGGCGGCG
GTTGCGAGCTGTCCCTATCCTGATCCCTTCCGAAGGGTCGATTTTTATAG
AGGAAGTCCTTGAGATTTCCGTGTGGCGCATACTCGACAATCACATAGAG
CGGACCATTTTGACTGCAGCAACCAAGTAAGTTAATAATATTGATATGTC
GCCCAATGATCTTCATCACTTCCATTTTCCGCACCAAGCTGGGCATGTCA
TCATCCGTGTGTCCTTCCTTCACCATTTTCACGGCGACCATGGCATTATT
GACCTCCGCCATGACCACTCGTCCG
BO10845.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:11:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7223-PB | 2190 | htl-RB | 1281..2187 | 925..19 | 4435 | 99.5 | Minus |
| CG7223-PA | 2190 | htl-RA | 1281..2187 | 925..19 | 4435 | 99.5 | Minus |
| CG7223-PC | 2190 | htl-RC | 1281..2187 | 925..19 | 4435 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 17:27:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| htl-RC | 3492 | CG7223-RC | 2068..2974 | 925..19 | 4475 | 99.6 | Minus |
| htl-RA | 3611 | CG7223-RA | 2187..3093 | 925..19 | 4475 | 99.6 | Minus |
| htl-RB | 3838 | CG7223-RB | 2414..3320 | 925..19 | 4475 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 17:27:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18045734..18046640 | 19..925 | 4475 | 99.6 | Plus |
| 3L | 28110227 | 3L | 14082274..14082635 | 552..191 | 595 | 77.6 | Minus |
| 3L | 28110227 | 3L | 14081839..14082046 | 893..686 | 305 | 76.4 | Minus |
Blast to na_te.dros performed on 2015-02-06 17:27:42 has no hits.
BO10845.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:50:59 Download gff for
BO10845.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| htl-PC | 1281..2190 | 15..925 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:08:41 Download gff for
BO10845.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7223-PC | 1281..2190 | 15..925 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:32:31 Download gff for
BO10845.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| htl-RB | 2414..3323 | 15..925 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:31:45 Download gff for
BO10845.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| htl-RB | 2414..3323 | 15..925 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:31:45 Download gff for
BO10845.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18045730..18046640 | 15..925 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:32:31 Download gff for
BO10845.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13871452..13872362 | 15..925 | 99 | | Plus |
BO10845.5prime Sequence
904 bp (812 high quality bases) assembled on 2006-04-19
> BO10845.5prime
GAAGTTATCAGTCGACATGGCTGCCGCCTGGAGTTGGCGAGCCAGTCACT
CAACGATCACAATGACAAGCGGATCGCTGGTAGTGCTCTTCCTGTTGCTT
TCGATTTGGCAGCCAGCCGTGCAGGTTGAAGGACGACGCCAAATGGCCAA
TAGCCAGGAGATGATCAAGGATCATTTGGGAGCCAGGAGTCAAAACAAGA
CACCAGCCATCACGAACAATGCTAATCAATCGAGCACATCCAGTGCGGAT
TTGGATGATGGCGCCGCAGATGATGATGATAACAAGGCCGATTTGCCGGT
GAATGTCAGTTCGAAACCCTACTGGCGTAATCCCAAAAAGATGAGTTTTC
TGCAGACGCGACCCTCGGGCTCACTGCTCACCCTCAATTGCCATGCCCTG
GGCAATCCTGAGCCCAATATCACATGGTATCGCAATGGCACCGTCGACTG
GACGCGCGGCTATGGGAGCCTGAAGCGGAATCGATGGACCCTGACGATGG
AGGATCTGGTGCCGGGCGATTGTGGCAACTACACCTGCAAGGTGTGCAAT
TCATTGGGTTGCATTCGTCACGACACCCAGGTGATTGTAAGCGATCGAGT
TAATCACAAACCGATCCTGATGACCGGTCCATTGAATCTCACACTGGTGG
TCAATTCCACAGGCAGCATGCACTGCAAATATCTATCGGACTTGACCAGC
AAGAAGGCGTGGATCTTTGTGCCCTGCCATGGCATGACCAACTGCTCCAA
CAATCGATCCATCATTGCCGAGGATAAGGATCAGTTGGACTTCGTGAACG
TTAGGATGGAGCAGGAGGGCTGGTACACGTGCGTCGAAAGCAACAGCCTG
GGTCAATCCAATAGCACTGCATATCTGCGAGTGGTGCGAAGTCTTCACGT
CTTG
BO10845.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:11:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7223-PB | 2190 | htl-RB | 1..888 | 17..904 | 4440 | 100 | Plus |
| CG7223-PA | 2190 | htl-RA | 1..888 | 17..904 | 4440 | 100 | Plus |
| CG7223-PC | 2190 | htl-RC | 1..888 | 17..904 | 4440 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:35:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| htl-RC | 3492 | CG7223-RC | 788..1675 | 17..904 | 4440 | 100 | Plus |
| htl-RA | 3611 | CG7223-RA | 907..1794 | 17..904 | 4440 | 100 | Plus |
| htl-RB | 3838 | CG7223-RB | 1134..2021 | 17..904 | 4440 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:35:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18047033..18047920 | 904..17 | 4440 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 04:35:42 has no hits.
BO10845.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:51:01 Download gff for
BO10845.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| htl-PC | 1..888 | 17..904 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:08:43 Download gff for
BO10845.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7223-PC | 1..888 | 17..904 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 07:03:14 Download gff for
BO10845.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| htl-RB | 1134..2021 | 17..904 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:37:43 Download gff for
BO10845.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| htl-RB | 1134..2021 | 17..904 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:37:43 Download gff for
BO10845.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18047033..18047920 | 17..904 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 07:03:14 Download gff for
BO10845.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13872755..13873642 | 17..904 | 100 | | Minus |
BO10845.complete Sequence
2221 bp assembled on 2008-01-16
GenBank Submission: FJ631894
> BO10845.complete
GAAGTTATCAGTCGACATGGCTGCCGCCTGGAGTTGGCGAGCCAGTCACT
CAACGATCACAATGACAAGCGGATCGCTGGTAGTGCTCTTCCTGTTGCTT
TCGATTTGGCAGCCAGCCGTGCAGGTTGAAGGACGACGCCAAATGGCCAA
TAGCCAGGAGATGATCAAGGATCATTTGGGAGCCAGGAGTCAAAACAAGA
CACCAGCCATCACGAACAATGCTAATCAATCGAGCACATCCAGTGCGGAT
TTGGATGATGGCGCCGCAGATGATGATGATAACAAGGCCGATTTGCCGGT
GAATGTCAGTTCGAAACCCTACTGGCGTAATCCCAAAAAGATGAGTTTTC
TGCAGACGCGACCCTCGGGCTCACTGCTCACCCTCAATTGCCATGCCCTG
GGCAATCCTGAGCCCAATATCACATGGTATCGCAATGGCACCGTCGACTG
GACGCGCGGCTATGGGAGCCTGAAGCGGAATCGATGGACCCTGACGATGG
AGGATCTGGTGCCGGGCGATTGTGGCAACTACACCTGCAAGGTGTGCAAT
TCATTGGGTTGCATTCGTCACGACACCCAGGTGATTGTAAGCGATCGAGT
TAATCACAAACCGATCCTGATGACCGGTCCATTGAATCTCACACTGGTGG
TCAATTCCACAGGCAGCATGCACTGCAAATATCTATCGGACTTGACCAGC
AAGAAGGCGTGGATCTTTGTGCCCTGCCATGGCATGACCAACTGCTCCAA
CAATCGATCCATCATTGCCGAGGATAAGGATCAGTTGGACTTCGTGAACG
TTAGGATGGAGCAGGAGGGCTGGTACACGTGCGTCGAAAGCAACAGCCTG
GGTCAATCCAATAGCACTGCATATCTGCGAGTGGTGCGAAGTCTTCACGT
CTTGGAAGCCGGAGTTGCCAGTGGTTCACTTCACTCGACCAGCTTCGTGT
ATATCTTCGTCTTTGGCGGACTTATTTTCATCTTTATGACCACCCTGTTT
GTGTTCTATGCCATCCGAAAGATGAAACATGAAAAGGTGTTGAAACAACG
CATCGAAACCGTTCACCAGTGGACCAAGAAAGTGATCATCTTCAAGCCCG
AAGGTGGCGGAGACTCCAGTGGTTCCATGGACACCATGATTATGCCGGTG
GTTAGGATACAGAAACAGCGCACCACTGTTCTTCAGAATGGCAACGAGCC
GGCTCCATTCAATGAATATGAATTTCCACTGGACTCGAACTGGGAACTGC
CCAGAAGTCATTTGGTACTGGGTGCCACTTTGGGAGAAGGTGCTTTCGGA
CGAGTGGTCATGGCGGAGGTCAATAATGCCATTGTCGCCGTGAAAATGGT
GAAGGAAGGACACACGGATGATGACATTGCCAGCTTGGTGCGGGAAATGG
AAGTGATGAAGATCATTGGGCGACATATCAATATTATTAACTTACTTGGT
TGCTGCAGTCAAAATGGTCCGCTCTATGTGATTGTCGAGTATGCGCCACA
CGGAAATCTCAAGGACTTCCTCTATAAAAATCGACCCTTCGGAAGGGATC
AGGATAGGGACAGCTCGCAACCGCCGCCATCGCCACCAGCTCATGTGATA
ACCGAAAAGGATCTGATCAAATTTGCCCACCAAATTGCCAGAGGAATGGA
CTATTTGGCCTCGCGGCGATGCATCCATCGAGATTTGGCAGCCAGGAATG
TGCTCGTCAGCGATGATTATGTGCTGAAGATTGCTGATTTTGGACTGGCG
AGGGACATTCAAAGCACGGATTACTATCGGAAGAACACAAATGGCAGGCT
ACCCATCAAATGGATGGCACCGGAGTCGCTGCAGGAGAAATTCTATGATT
CCAAGAGCGATGTCTGGTCATATGGCATCCTGCTGTGGGAGATCATGACC
TATGGGCAGCAACCATATCCAACTATCATGTCCGCTGAGGAGCTGTACAC
CTATCTCATGTCCGGTCAGCGGATGGAGAAACCAGCGAAATGCTCCATGA
ACATCTACATTCTGATGCGACAATGTTGGCATTTCAACGCCGACGATCGG
CCACCTTTTACGGAAATTGTTGAGTATATGGACAAGCTGCTCCAGACGAA
GGAGGACTACCTCGATGTGGATATCGCCAATCTGGATACACCGCCCTCGA
CTAGCGACGAGGAGGAAGATGAAACGGACAACCTGCAGAAGTGGTGTAAT
TATGCAAGCTTTCTAGACCAT
BO10845.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:26:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| htl-RC | 2190 | CG7223-PC | 1..2187 | 17..2203 | 10935 | 100 | Plus |
| htl-RA | 2190 | CG7223-PA | 1..2187 | 17..2203 | 10935 | 100 | Plus |
| htl-RB | 2190 | CG7223-PB | 1..2187 | 17..2203 | 10935 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:26:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| htl-RC | 3492 | CG7223-RC | 788..2974 | 17..2203 | 10935 | 100 | Plus |
| htl-RA | 3611 | CG7223-RA | 907..3093 | 17..2203 | 10935 | 100 | Plus |
| htl-RB | 3838 | CG7223-RB | 1134..3320 | 17..2203 | 10935 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:26:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18045734..18047920 | 2203..17 | 10935 | 100 | Minus |
| 3L | 28110227 | 3L | 14082274..14082635 | 1670..2031 | 595 | 77.6 | Plus |
| 3L | 28110227 | 3L | 14081839..14082046 | 1329..1536 | 320 | 76.9 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:26:51 has no hits.
BO10845.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:56:49 Download gff for
BO10845.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| htl-RC | 1..2190 | 17..2207 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:31:34 Download gff for
BO10845.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| htl-RC | 783..2969 | 17..2205 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:58:24 Download gff for
BO10845.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| htl-RB | 1134..3320 | 17..2205 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:56:49 Download gff for
BO10845.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| htl-RC | 783..2972 | 17..2207 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:01:22 Download gff for
BO10845.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| htl-RB | 1134..3320 | 17..2205 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:01:22 Download gff for
BO10845.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18045732..18047920 | 17..2205 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:58:24 Download gff for
BO10845.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13871454..13873642 | 17..2205 | 99 | | Minus |
BO10845.pep Sequence
Translation from 16 to 2221
> BO10845.pep
MAAAWSWRASHSTITMTSGSLVVLFLLLSIWQPAVQVEGRRQMANSQEMI
KDHLGARSQNKTPAITNNANQSSTSSADLDDGAADDDDNKADLPVNVSSK
PYWRNPKKMSFLQTRPSGSLLTLNCHALGNPEPNITWYRNGTVDWTRGYG
SLKRNRWTLTMEDLVPGDCGNYTCKVCNSLGCIRHDTQVIVSDRVNHKPI
LMTGPLNLTLVVNSTGSMHCKYLSDLTSKKAWIFVPCHGMTNCSNNRSII
AEDKDQLDFVNVRMEQEGWYTCVESNSLGQSNSTAYLRVVRSLHVLEAGV
ASGSLHSTSFVYIFVFGGLIFIFMTTLFVFYAIRKMKHEKVLKQRIETVH
QWTKKVIIFKPEGGGDSSGSMDTMIMPVVRIQKQRTTVLQNGNEPAPFNE
YEFPLDSNWELPRSHLVLGATLGEGAFGRVVMAEVNNAIVAVKMVKEGHT
DDDIASLVREMEVMKIIGRHINIINLLGCCSQNGPLYVIVEYAPHGNLKD
FLYKNRPFGRDQDRDSSQPPPSPPAHVITEKDLIKFAHQIARGMDYLASR
RCIHRDLAARNVLVSDDYVLKIADFGLARDIQSTDYYRKNTNGRLPIKWM
APESLQEKFYDSKSDVWSYGILLWEIMTYGQQPYPTIMSAEELYTYLMSG
QRMEKPAKCSMNIYILMRQCWHFNADDRPPFTEIVEYMDKLLQTKEDYLD
VDIANLDTPPSTSDEEEDETDNLQKWCNYASFLDH
BO10845.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:18:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| htl-PC | 729 | CG7223-PC | 1..729 | 1..729 | 3886 | 100 | Plus |
| htl-PA | 729 | CG7223-PA | 1..729 | 1..729 | 3886 | 100 | Plus |
| htl-PB | 729 | CG7223-PB | 1..729 | 1..729 | 3886 | 100 | Plus |
| btl-PB | 1052 | CG32134-PB | 356..1030 | 61..717 | 1673 | 53 | Plus |
| btl-PA | 1052 | CG32134-PA | 356..1030 | 61..717 | 1673 | 53 | Plus |
| btl-PB | 1052 | CG32134-PB | 116..344 | 75..287 | 183 | 27.7 | Plus |
