Clone Sequence Records
BO10847.3prime Sequence
888 bp (812 high quality bases) assembled on 2006-04-19
> BO10847.3prime
ATGGTCTAGAAAGCTTGCATGTGAAATTTGTAACAAGCATTTAAGGTAGT
TGGCCTTGGCTGTTGATGACGCCATATACTTGGAGTTCCAGTCGTGCTCG
TTGATCTGCATCACTTTGTAGCCCATCATCTCTAGATGTCGCATCTTCAA
AGATTCAGGACCCCGCAATGCAGTCAGATCGTTTTCACAAAAAGAGTCGA
GCTTGAGCAGTAGTATTGCCACTTTGGTTATGCGATCCAACATGGTTGCC
TCCACGGGAGGTGCTGGGATGGGATTTTTATCCCGATCGAAATGTATCAC
AAAGTCTATTTGGTAGCCGTAGGGTGTAGTGTGGTTGCAGCGGAAATGCT
TGTCATTTTGAAGAAGCTGATGCAGCAGCTGCTTCACCTCTGTTGTGGAC
TCACTGGGTATTAAGGATTTTTTGCTGATCTGCGCCTCGATGTAGTTTTG
TTGAAACCAGGGCACATTCGCCTCGGGAAAGTCCAGGCATACTGTGCGAT
TCAGTTGCATAACCAGGTTAAGGACCCTCTCCGGATACGTTGCTTTTGAG
TAGCATACTTGTATCTCATCCTCGATTCGCTGAATGAATTTCACGCAGAA
TACTTGATTGATTAGCTGCTCTGGTATTGATTTGTAAAAGCACAGTGCTA
GACAAGCCTGGACAACCGATAAACCGCTCATCTGGTCAAAATCTCTTAGC
AGTACTTCGGAGGCGTGGTTTAGAGCCTCCACGGACGCTGGCATGTAGCC
CAAATTATACGAGCAGGTCAACACTTTCTCCACTGTGTCGCCGGAAACGT
GATCATGCTGTTCGGAAATGTAGGCGAACATGGACTCCAGGAGCTCGGGA
ACAAAGAAATTCGAAGCGTTGAAGTTGTAGGCCATGTC
BO10847.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:11:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31643-PA | 2700 | CG31643-RA | 1828..2697 | 888..19 | 4350 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:46:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31643-RB | 2842 | CG31643-RB | 1914..2783 | 888..19 | 4350 | 100 | Minus |
CG31643-RA | 2938 | CG31643-RA | 1914..2783 | 888..19 | 4350 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:46:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6040337..6040613 | 696..420 | 1385 | 100 | Minus |
2L | 23513712 | 2L | 6040924..6041128 | 223..19 | 1025 | 100 | Minus |
2L | 23513712 | 2L | 6040669..6040864 | 419..224 | 980 | 100 | Minus |
2L | 23513712 | 2L | 6040094..6040287 | 888..695 | 970 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:46:09 has no hits.
BO10847.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:51:04 Download gff for
BO10847.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31643-PA | 1828..2700 | 18..888 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:08:47 Download gff for
BO10847.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31643-PA | 1828..2700 | 18..888 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:49:53 Download gff for
BO10847.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31643-RA | 1870..2747 | 9..888 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:12:59 Download gff for
BO10847.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31643-RA | 1914..2791 | 9..888 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:12:59 Download gff for
BO10847.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6040094..6040287 | 695..888 | 100 | -> | Minus |
2L | 6040339..6040613 | 420..694 | 100 | -> | Minus |
2L | 6040669..6040864 | 224..419 | 100 | -> | Minus |
2L | 6040924..6041136 | 9..223 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:49:53 Download gff for
BO10847.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6040094..6040287 | 695..888 | 100 | -> | Minus |
arm_2L | 6040339..6040613 | 420..694 | 100 | -> | Minus |
arm_2L | 6040669..6040864 | 224..419 | 100 | -> | Minus |
arm_2L | 6040924..6041136 | 9..223 | 98 | | Minus |
BO10847.5prime Sequence
918 bp (830 high quality bases) assembled on 2006-04-19
> BO10847.5prime
GAAGTTATCAGTCGACATGTATCTGAACCACCTGCCGCGGACACAATGGA
AGTACCTACAATACCTTCTGCGAGTGCGTCAGCTTCAGCTCCTGCGACGG
CACGTTAACATTGGCGCAAAGCCGCCCATCCAAACAGCTGCCTTGCTGCC
GGCATTGGGCCAAAAACTGAGGAAGCACTCGCAGCTGGTGAACGGAGATC
TCCAAGACAAGTTTGGCGTGCCACGGGAACAGGATGCTCTTCTAACCCGA
CTGGAGGAGGCCAAGACGGGTAACCAGATTTTAGATGTGTTGGAGAGCTG
TGACGGCCTGCAGAGCTCCCATGTGGTGATGGGAATCTCACTGCTGTGGA
ACATCTATCACGACGCGGAGCAGGCAAGTAAAGATGCCATCACGGATCGC
GTGCTGCTTAACGTGCTCCCAAAGTTGGCCCCTTATGTACACCAACTGGA
GATCGATGATCTCAGTAGATGCTACCTGTACCTGCGCAAAATGCATATAC
CAAACTCCGAGGCAGTCGTGGAGGCCGTGCTGACGAGATCTCTTCAATTA
ATCGAGTCACAAGTTGATGACGAAGTCATTCCCTTGACCTCCTTGTCTCG
CCTCTCGGTGGGCATCAACTTGGAACGCGACTTCTTCACTCCGCTTGTGT
GTAGGAACTTTATTCCGCACCTGGAACATCACATCAATTGGTGTCGCAGC
GCAGAGCAGGTTCGCCTTCTGTCCACGTGCCTCTTTCAGCTACACTTTCT
CATTGATGAGGAGCTGTTTACGCGCTTCAAGTTGCGCTTGACTGAAATGA
TGCAAAGCGGCGTCCTCAGCAGCGAAACCCCTAAGGCTCTTCTGAAGGTG
ATCCACATGCTGAATATTCCAGTGTGGTCGCAGACCCACACCCAATTGAT
TCGGGAGGTCATGCTGGT
BO10847.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:11:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31643-PA | 2700 | CG31643-RA | 1..902 | 17..918 | 4510 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:22:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31643-RB | 2842 | CG31643-RB | 86..988 | 16..918 | 4515 | 100 | Plus |
CG31643-RA | 2938 | CG31643-RA | 86..988 | 16..918 | 4515 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:22:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6038202..6039104 | 16..918 | 4515 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 12:22:17 has no hits.
BO10847.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:51:05 Download gff for
BO10847.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31643-PA | 1..902 | 17..918 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:08:48 Download gff for
BO10847.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31643-PA | 1..902 | 17..918 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:29:56 Download gff for
BO10847.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31643-RA | 31..944 | 3..918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:36:42 Download gff for
BO10847.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31643-RA | 75..988 | 3..918 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:36:42 Download gff for
BO10847.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6038191..6039104 | 3..918 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:29:56 Download gff for
BO10847.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6038191..6039104 | 3..918 | 99 | | Plus |
BO10847.complete Sequence
2731 bp (2731 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631895
> BO10847.complete
GAAGTTATCAGTCGACATGTATCTGAACCACCTGCCGCGGACACAATGGA
AGTACCTACAATACCTTCTGCGAGTGCGTCAGCTTCAGCTCCTGCGACGG
CACGTTAACATTGGCGCAAAGCCGCCCATCCAAACAGCTGCCTTGCTGCC
GGCATTGGGCCAAAAACTGAGGAAGCACTCGCAGCTGGTGAACGGAGATC
TCCAAGACAAGTTTGGCGTGCCACGGGAACAGGATGCTCTTCTAACCCGA
CTGGAGGAGGCCAAGACGGGTAACCAGATTTTAGATGTGTTGGAGAGCTG
TGACGGCCTGCAGAGCTCCCATGTGGTGATGGGAATCTCACTGCTGTGGA
ACATCTATCACGACGCGGAGCAGGCAAGTAAAGATGCCATCACGGATCGC
GTGCTGCTTAACGTGCTCCCAAAGTTGGCCCCTTATGTACACCAACTGGA
GATCGATGATCTCAGTAGATGCTACCTGTACCTGCGCAAAATGCATATAC
CAAACTCCGAGGCAGTCGTGGAGGCCGTGCTGACGAGATCTCTTCAATTA
ATCGAGTCACAAGTTGATGACGAAGTCATTCCCTTGACCTCCTTGTCTCG
CCTCTCGGTGGGCATCAACTTGGAACGCGACTTCTTCACTCCGCTTGTGT
GTAGGAACTTTATTCCGCACCTGGAACATCACATCAATTGGTGTCGCAGC
GCAGAGCAGGTTCGCCTTCTGTCCACGTGCCTCTTTCAGCTACACTTTCT
CATTGATGAGGAGCTGTTTACGCGCTTCAAGTTGCGCTTGACTGAAATGA
TGCAAAGCGGCGTCCTCAGCAGCGAAACCCCTAAGGCTCTTCTGAAGGTG
ATCCACATGCTGAATATTCCAGTGTGGTCGCAGACCCACACCCAATTGAT
TCGGGAGGTCATGCTGGTCTTGCGACCTTGCATACACCAGATGGAGTCTG
CAGATCTAAAGAGCATTTGTCGCACATTTTTGCATCATCAAGAACCCGCC
GCACTGATAGAGCCGCTCAAGAAAGCCCTTGAAAAGTTACTACAGGAAGA
AGGCACTGCTGACGCCCTGTTTTGTGCAGTTCCCTTTGCAACGCCACTGC
AGAGAGACCAGTATCTGCATCAGTTTAAGGAACTGCTCTACTCCGAAGAG
GCCTGGCAGCAACCCAATGCGAGCGGACATTTATTCAGCGTTCTGCGTGC
ACTAAAAGTCTCCGACATTGAATTCTGCAACACATACTGGTCAGGAGTTG
TAAAAGAGCTGGAGTCCTGTCCGGAAAAGCATTTGCACCTACGGTTCCTG
AGACACTGTCAACGCTATATGAACTTTAATAACAATCTGGGAGGAACCTA
CCGTCACTTAGAACTGGAACGAAAGCTAAGTCGCATGTGCATGAATGCTA
TTGAGCATGACATAGCGGGAAGGCTGCCAGCGAAGTTCGCACGACTTGCA
TCCTTTGTGCTAGCTTACGGGCAGACTCCGTTGGCCTGGAAGAAATTTCC
CAACTTTTTGTTAAGCAAAATGCTCGCAATGGCGCCCCAGCTTGGCATTC
AGGATTGCTTTCTCCTCAGTCGCGGCATGCAAATAGCCAGCGAACTAAGG
TTTCGCCAGCATCTTCCGGCATTAGCTGGCATGCAACTGTCCACAATGGA
CAGCATTCTCATCGGTTGTGCGGAGAGGCACTTGAGAGATGCCGAAAAGG
ACCCTCTAAATGCCAGCGAATTGAGCATGATTGTCAGAACACTCAGTCAT
CGCAAGAAGCTAAAGAATACGGTGGTTTACAACCAGGCCCTGGCGCAGTA
CAAAAATCTGCACTGCAACGATCTCAATTCTCGGGTGGTTCGGGACATGG
CCTACAACTTCAACGCTTCGAATTTCTTTGTTCCCGAGCTCCTGGAGTCC
ATGTTCGCCTACATTTCCGAACAGCATGATCACGTTTCCGGCGACACAGT
GGAGAAAGTGTTGACCTGCTCGTATAATTTGGGCTACATGCCAGCGTCCG
TGGAGGCTCTAAACCACGCCTCCGAAGTACTGCTAAGAGATTTTGACCAG
ATGAGCGGTTTATCGGTTGTCCAGGCTTGTCTAGCACTGTGCTTTTACAA
ATCAATACCAGAGCAGCTAATCAATCAAGTATTCTGCGTGAAATTCATTC
AGCGAATCGAGGATGAGATACAAGTATGCTACTCAAAAGCAACGTATCCG
GAGAGGGTCCTTAACCTGGTTATGCAACTGAATCGCACAGTATGCCTGGA
CTTTCCCGAGGCGAATGTGCCCTGGTTTCAACAAAACTACATCGAGGCGC
AGATCAGCAAAAAATCCTTAATACCCAGTGAGTCCACAACAGAGGTGAAG
CAGCTGCTGCATCAGCTTCTTCAAAATGACAAGCATTTCCGCTGCAACCA
CACTACACCCTACGGCTACCAAATAGACTTTGTGATACATTTCGATCGGG
ATAAAAATCCCATCCCAGCACCTCCCGTGGAGGCAACCATGTTGGATCGC
ATAACCAAAGTGGCAATACTACTGCTCAAGCTCGACTCTTTTTGTGAAAA
CGATCTGACTGCATTGCGGGGTCCTGAATCTTTGAAGATGCGACATCTAG
AGATGATGGGCTACAAAGTGATGCAGATCAACGAGCACGACTGGAACTCC
AAGTATATGGCGTCATCAACAGCCAAGGCCAACTACCTTAAATGCTTGTT
ACAAATTTCACATGCAAGCTTTCTAGACCAT
BO10847.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:05:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31643-RB | 2700 | CG31643-PB | 1..2697 | 17..2713 | 13485 | 100 | Plus |
CG31643-RA | 2700 | CG31643-PA | 1..2697 | 17..2713 | 13485 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:05:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31643-RB | 2842 | CG31643-RB | 86..2783 | 16..2713 | 13490 | 100 | Plus |
CG31643-RA | 2938 | CG31643-RA | 86..2783 | 16..2713 | 13490 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:05:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6038202..6039943 | 16..1757 | 8710 | 100 | Plus |
2L | 23513712 | 2L | 6040008..6040287 | 1758..2037 | 1400 | 100 | Plus |
2L | 23513712 | 2L | 6040337..6040613 | 2036..2312 | 1385 | 100 | Plus |
2L | 23513712 | 2L | 6040924..6041128 | 2509..2713 | 1025 | 100 | Plus |
2L | 23513712 | 2L | 6040669..6040864 | 2313..2508 | 980 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:05:48 has no hits.
BO10847.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:56:30 Download gff for
BO10847.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31643-RA | 1..2700 | 17..2714 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:13:39 Download gff for
BO10847.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31643-RA | 31..2747 | 3..2723 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:03:03 Download gff for
BO10847.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31643-RA | 43..2739 | 17..2715 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:56:30 Download gff for
BO10847.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31643-RA | 31..2747 | 3..2723 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:14:41 Download gff for
BO10847.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31643-RA | 87..2783 | 17..2715 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:14:41 Download gff for
BO10847.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6038203..6039943 | 17..1757 | 100 | -> | Plus |
2L | 6040008..6040287 | 1758..2037 | 100 | -> | Plus |
2L | 6040339..6040613 | 2038..2312 | 100 | -> | Plus |
2L | 6040669..6040864 | 2313..2508 | 100 | -> | Plus |
2L | 6040924..6041128 | 2509..2715 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:03:03 Download gff for
BO10847.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6040339..6040613 | 2038..2312 | 100 | -> | Plus |
arm_2L | 6038203..6039943 | 17..1757 | 100 | -> | Plus |
arm_2L | 6040008..6040287 | 1758..2037 | 100 | -> | Plus |
arm_2L | 6040669..6040864 | 2313..2508 | 100 | -> | Plus |
arm_2L | 6040924..6041128 | 2509..2715 | 99 | | Plus |
BO10847.pep Sequence
Translation from 16 to 2731
> BO10847.pep
MYLNHLPRTQWKYLQYLLRVRQLQLLRRHVNIGAKPPIQTAALLPALGQK
LRKHSQLVNGDLQDKFGVPREQDALLTRLEEAKTGNQILDVLESCDGLQS
SHVVMGISLLWNIYHDAEQASKDAITDRVLLNVLPKLAPYVHQLEIDDLS
RCYLYLRKMHIPNSEAVVEAVLTRSLQLIESQVDDEVIPLTSLSRLSVGI
NLERDFFTPLVCRNFIPHLEHHINWCRSAEQVRLLSTCLFQLHFLIDEEL
FTRFKLRLTEMMQSGVLSSETPKALLKVIHMLNIPVWSQTHTQLIREVML
VLRPCIHQMESADLKSICRTFLHHQEPAALIEPLKKALEKLLQEEGTADA
LFCAVPFATPLQRDQYLHQFKELLYSEEAWQQPNASGHLFSVLRALKVSD
IEFCNTYWSGVVKELESCPEKHLHLRFLRHCQRYMNFNNNLGGTYRHLEL
ERKLSRMCMNAIEHDIAGRLPAKFARLASFVLAYGQTPLAWKKFPNFLLS
KMLAMAPQLGIQDCFLLSRGMQIASELRFRQHLPALAGMQLSTMDSILIG
CAERHLRDAEKDPLNASELSMIVRTLSHRKKLKNTVVYNQALAQYKNLHC
NDLNSRVVRDMAYNFNASNFFVPELLESMFAYISEQHDHVSGDTVEKVLT
CSYNLGYMPASVEALNHASEVLLRDFDQMSGLSVVQACLALCFYKSIPEQ
LINQVFCVKFIQRIEDEIQVCYSKATYPERVLNLVMQLNRTVCLDFPEAN
VPWFQQNYIEAQISKKSLIPSESTTEVKQLLHQLLQNDKHFRCNHTTPYG
YQIDFVIHFDRDKNPIPAPPVEATMLDRITKVAILLLKLDSFCENDLTAL
RGPESLKMRHLEMMGYKVMQINEHDWNSKYMASSTAKANYLKCLLQISHA
SFLDH
BO10847.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:47:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31643-PB | 899 | CG31643-PB | 1..899 | 1..899 | 4684 | 100 | Plus |
CG31643-PA | 899 | CG31643-PA | 1..899 | 1..899 | 4684 | 100 | Plus |