Clone Sequence Records
BO10849.3prime Sequence
911 bp (863 high quality bases) assembled on 2006-04-19
> BO10849.3prime
ATGGTCTAGAAAGCTTGCGATCCTTAGGTAGTGATAGCCACTGATGGGCG
ACCACTTTCTCACGTTGGTCAGGGGCTTAAAGAGTTTTCGTTTGGCGATC
AGGATGTCGGAGCTGGCACCGCCACCCCCACCACCGTTCGCTGCCGACGA
AGGCGAGTCTTCGGAGTGGGGAACAGTCGCAACCTTCGGCTTCAGCAGCA
CCGGGCGGCATCCTGCAAACTTAAAGCGGATGTTGCCCGCGCAGTTGAGC
TGAAGATTTGGTGACTGAAGGTCGGGGAAAGCCTCGCAGAGCGTAGGCTT
CGGTTTGAGTGCCTTGCTAGGATCGTCTCCGTGGCACATGGCTGCCGCAA
GAGTACTCCATTCCAACCGACGCACTCCCGGCACTGATTCTATTCTGTAA
GCGGGTTGTTTGGCCTTCACATACCGTCTGGTTACCATCTTTTCGTAGGC
TCGCGCATAGTGGACCAAGAAGGGCTGCAGAGCAGCACCGCATCCGTACT
CCAGCCATTCATACAGGTATACGTCATCATGACCGCCAAGGAAGATGGCA
GCCGGAGCCAGATCCGGCCACAGGCTATCCGGGATTTCCTCGACGCGCAG
TTTGTAGATGTAGGGAATAAACTCACGAAAGGCATATTCTCCCAGGGCAA
TGAGACCGCGCACTGCTCTACTGATATACCTAAAGTCTCTCTCACTGCTG
ACGTGGCGACCTTCGAAGAATCTCGCTAGGCGTCTCTTGATCAAAAACAG
GCACTCTGCATGTAGGTAACCACTTTGAGATGCCAGCTGTCCTATAGTTT
CACACAGCTCGTCCACCAGGCCATTGCCGACTGGACAGGCAAAGTAGCTG
GATAGGTGTTCCGCCTCCGGCTGAGGATTCATTCCTCCTCCTCGGATTGC
AGCTTGTAGAT
BO10849.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:11:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3883-PA | 2154 | CG3883-RA | 1289..2151 | 881..19 | 4315 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:39:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Saf6-RB | 2407 | CG3883-RB | 1368..2261 | 911..19 | 4430 | 99.8 | Minus |
| Saf6-RA | 2416 | CG3883-RA | 1377..2270 | 911..19 | 4430 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:39:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 813460..813893 | 19..452 | 2170 | 100 | Plus |
| 2L | 23513712 | 2L | 813950..814186 | 452..688 | 1185 | 100 | Plus |
| 2L | 23513712 | 2L | 814243..814468 | 687..911 | 1065 | 99.1 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:39:36 has no hits.
BO10849.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:51:06 Download gff for
BO10849.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3883-PA | 1258..2154 | 16..911 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:08:49 Download gff for
BO10849.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3883-PA | 1258..2154 | 16..911 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 02:02:26 Download gff for
BO10849.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Saf6-RA | 1377..2276 | 14..911 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:18:39 Download gff for
BO10849.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Saf6-RA | 1377..2276 | 14..911 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:18:39 Download gff for
BO10849.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 813454..813893 | 14..452 | 99 | <- | Plus |
| 2L | 813951..814184 | 453..686 | 100 | <- | Plus |
| 2L | 814243..814468 | 687..911 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 02:02:26 Download gff for
BO10849.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 813454..813893 | 14..452 | 99 | <- | Plus |
| arm_2L | 813951..814184 | 453..686 | 100 | <- | Plus |
| arm_2L | 814243..814468 | 687..911 | 99 | | Plus |
BO10849.5prime Sequence
912 bp (784 high quality bases) assembled on 2006-04-19
> BO10849.5prime
GAAGTTATCAGTCGACATGAAAACCTCTGGCGCCAGCAATACTGACGAGC
TGAACAAGTCATCGCACAGCAAAGTCAGCAAAAAGTCCACTAAGTCGCGA
TCTAAGTCGGCGAAATTGGAGTTGACTGGAAAGAATTCCCTGTCGGCATC
CGCATCATCCTCCATCGCATCCGCAGTGAGCGGGGGCGTTGCAGTGGGCA
GCCTGCCGGCCACGCCCACTCACCTAAACATGGTGACAACGCCCACCACG
CCAACATCTAGTCTGGGTAACTACAATCTGTTTGACGCCTCATTTGCGGT
AGCAGGAAGTGGTGGGCACGGACTTGCAGGCGGCATCGCGGGCGCAGAAG
CCTCTGGCAACTCCAGTCGAATGGGTCATCAGAAGAGCTATGCTGGTTTC
GATCCGCGCAGCATCAAGATCTTTTGGGAGCAGCACGACCAGACCGATGT
GGAACTCTCCCAGGATGTGTGCGCCCGTTTGGCGGAAGATGCCTCCTACA
AAGTCTGGGAGCTGATCAATAATGTCAAAATATACTCGCGCCACTCGGGC
GGAGTGGTGACATACGACCTGGTGAACGAAGTGCTAAAAGATGCCGATGT
GCCGCCTATGCTGGGTGCGATGGACAGCGACTGGGACCGGATCGACTATG
ACGGCAGTTTTTACTTTCACTCGGATAAGATCTTCGAGCTGAGCGCGGAG
TTTCAGAAGGAAGTCAATCTGTGCACACCTGATGATGCAGACTTTCAGAG
CATCTGCCCAGTGGAGGATAAGCACATGGACCAACTAAGACAGTGTGTCC
AGAGTCTTGTGACGGCAGCCCTTTTTGCGGACAGCAAATCCCAGACGGCC
GCCGTCTGCCATGCTTTTCAGACACCCCTGATGGGATCTATCTACCGAGT
GATTGTGAGTAA
BO10849.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:11:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3883-PA | 2154 | CG3883-RA | 1..896 | 17..912 | 4480 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:49:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Saf6-RA | 2416 | CG3883-RA | 120..1015 | 17..912 | 4480 | 100 | Plus |
| Saf6-RB | 2407 | CG3883-RB | 120..1006 | 17..912 | 4335 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:49:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 814830..815221 | 912..521 | 1960 | 100 | Minus |
| 2L | 23513712 | 2L | 815474..815831 | 374..17 | 1790 | 100 | Minus |
| 2L | 23513712 | 2L | 815275..815422 | 520..373 | 740 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:49:24 has no hits.
BO10849.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:51:06 Download gff for
BO10849.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3883-PA | 1..894 | 17..910 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:08:51 Download gff for
BO10849.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3883-PA | 1..894 | 17..910 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:28:33 Download gff for
BO10849.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Saf6-RA | 115..1015 | 10..912 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:13:53 Download gff for
BO10849.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Saf6-RA | 115..1015 | 10..912 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:13:53 Download gff for
BO10849.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 814830..815221 | 521..912 | 100 | <- | Minus |
| 2L | 815275..815421 | 374..520 | 100 | <- | Minus |
| 2L | 815475..815836 | 10..373 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:28:33 Download gff for
BO10849.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 814830..815221 | 521..912 | 100 | <- | Minus |
| arm_2L | 815275..815421 | 374..520 | 100 | <- | Minus |
| arm_2L | 815475..815836 | 10..373 | 98 | | Minus |
BO10849.complete Sequence
2185 bp (2185 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631896
> BO10849.complete
GAAGTTATCAGTCGACATGAAAACCTCTGGCGCCAGCAATACTGACGAGC
TGAACAAGTCATCGCACAGCAAAGTCAGCAAAAAGTCCACTAAGTCGCGA
TCTAAGTCGGCGAAATTGGAGTTGACTGGAAAGAATTCCCTGTCGGCATC
CGCATCATCCTCCATCGCATCCGCAGTGAGCGGGGGCGTTGCAGTGGGCA
GCCTGCCGGCCACGCCCACTCACCTAAACATGGTGACAACGCCCACCACG
CCAACATCTAGTCTGGGTAACTACAATCTGTTTGACGCCTCATTTGCGGT
AGCAGGAAGTGGTGGGCACGGACTTGCAGGCGGCATCGCGGGCGCAGAAG
CCTCTGGCAACTCCAGTCGAATGGGTCATCAGAAGAGCTATGCTGGTTTC
GATCCGCGCAGCATCAAGATCTTTTGGGAGCAGCACGACCAGACCGATGT
GGAACTCTCCCAGGATGTGTGCGCCCGTTTGGCGGAAGATGCCTCCTACA
AAGTCTGGGAGCTGATCAATAATGTCAAAATATACTCGCGCCACTCGGGC
GGAGTGGTGACATACGACCTGGTGAACGAAGTGCTAAAAGATGCCGATGT
GCCGCCTATGCTGGGTGCGATGGACAGCGACTGGGACCGGATCGACTATG
ACGGCAGTTTTTACTTTCACTCGGATAAGATCTTCGAGCTGAGCGCGGAG
TTTCAGAAGGAAGTCAATCTGTGCACACCTGATGATGCAGACTTTCAGAG
CATCTGCCCAGTGGAGGATAAGCACATGGACCAACTAAGACAGTGTGTCC
AGAGTCTTGTGACGGCAGCCCTTTTTGCGGACAGCAAATCCCAGACGGCC
GCCGTCTGCCATGCTTTTCAGACACCCCTGATGGGATCTATCTACCGAGT
GATTGTGAGTAAGATGGTCCAGTTGCTAGCCTTTAAGCAGCAGGACCATT
TGAGCCAGCGATGCTGGCGACTGCTCCGAGCATGCAACTACAACGCCACT
GCTAATCACAATGCCTGCCGGCCGGAGTACTTCAACCTGGCCGAGGTACT
GGTCAGCCAGCTAATGGCACCTTACGAAACTATCAAAGCTCCACACGTCG
ACCCAGATCCGGGACAAACCACCTCCATCAAAATGGAGTTTGAAGAAGAA
CTAAAGGTTGAGCCAGACCAGTGCCATAATCCGGAAACCCAGGAAAATCC
GGAGGTCATGGGAGTAGAGAAACAGGAGCAAGAACCCCAGATGTTTCCGG
GTGAGAGCACCATGGAACACACAATCTACAAGCTGCAATCGGAGGAGGAG
GAATTGAATCCTCAGCCGGAGGCGGAACACCTATCCAGCTACTTTGCCTG
TCCAGTCGGCAATGGCCTGGTGGACGAGCTGTGTGAAACTATAGGACAGC
TGGCATCTCAAAGTGGTTACCTACATGCAGAGTGCCTGTTTTTGATCAAG
AGACGCCTAGCGAGATTCTTCGAAGGTCGCCACGTCAGCAGTGAGAGAGA
CTTTAGGTATATCAGTAGAGCAGTGCGCGGTCTCATTGCCCTGGGAGAAT
ATGCCTTTCGTGAGTTTATTCCCTACATCTACAAACTGCGCGTCGAGGAA
ATCCCGGATAGCCTGTGGCCGGATCTGGCTCCGGCTGCCATCTTCCTTGG
CGGTCATGATGACGTATACCTGTATGAATGGCTGGAGTACGGATGCGGTG
CTGCTCTGCAGCCCTTCTTGGTCCACTATGCGCGAGCCTACGAAAAGATG
GTAACCAGACGGTATGTGAAGGCCAAACAACCCGCTTACAGAATAGAATC
AGTGCCGGGAGTGCGTCGGTTGGAATGGAGTACTCTTGCGGCAGCCATGT
GCCACGGAGACGATCCTAGCAAGGCACTCAAACCGAAGCCTACGCTCTGC
GAGGCTTTCCCCGACCTTCAGTCACCAAATCTTCAGCTCAACTGCGCGGG
CAACATCCGCTTTAAGTTTGCAGGATGCCGCCCGGTGCTGCTGAAGCCGA
AGGTTGCGACTGTTCCCCACTCCGAAGACTCGCCTTCGTCGGCAGCGAAC
GGTGGTGGGGGTGGCGGTGCCAGCTCCGACATCCTGATCGCCAAACGAAA
ACTCTTTAAGCCCCTGACCAACGTGAGAAAGTGGTCGCCCATCAGTGGCT
ATCACTACCTAAGGATCGCAAGCTTTCTAGACCAT
BO10849.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:44:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Saf6-RA | 2154 | CG3883-PA | 1..2151 | 17..2167 | 10755 | 100 | Plus |
| Saf6-RB | 2145 | CG3883-PB | 1..2142 | 17..2167 | 10585 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:44:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Saf6-RA | 2416 | CG3883-RA | 120..2270 | 17..2167 | 10755 | 100 | Plus |
| Saf6-RB | 2407 | CG3883-RB | 120..2261 | 17..2167 | 10585 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:44:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 814243..815221 | 1499..521 | 4895 | 100 | Minus |
| 2L | 23513712 | 2L | 813460..813893 | 2167..1734 | 2170 | 100 | Minus |
| 2L | 23513712 | 2L | 815474..815831 | 374..17 | 1790 | 100 | Minus |
| 2L | 23513712 | 2L | 813950..814186 | 1734..1498 | 1185 | 100 | Minus |
| 2L | 23513712 | 2L | 815275..815422 | 520..373 | 740 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:44:25 has no hits.
BO10849.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:56:31 Download gff for
BO10849.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3883-RA | 1..2154 | 17..2170 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:13:40 Download gff for
BO10849.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3883-RA | 116..2277 | 10..2172 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:10:56 Download gff for
BO10849.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Saf6-RA | 120..2270 | 17..2169 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:56:32 Download gff for
BO10849.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3883-RA | 116..2277 | 10..2172 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:27:15 Download gff for
BO10849.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Saf6-RA | 120..2270 | 17..2169 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:27:15 Download gff for
BO10849.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 813951..814184 | 1500..1733 | 100 | <- | Minus |
| 2L | 813457..813893 | 1734..2169 | 99 | <- | Minus |
| 2L | 814243..815221 | 521..1499 | 100 | <- | Minus |
| 2L | 815275..815421 | 374..520 | 100 | <- | Minus |
| 2L | 815475..815831 | 17..373 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:10:56 Download gff for
BO10849.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 813457..813893 | 1734..2169 | 99 | <- | Minus |
| arm_2L | 813951..814184 | 1500..1733 | 100 | <- | Minus |
| arm_2L | 814243..815221 | 521..1499 | 100 | <- | Minus |
| arm_2L | 815275..815421 | 374..520 | 100 | <- | Minus |
| arm_2L | 815475..815831 | 17..373 | 100 | | Minus |
BO10849.pep Sequence
Translation from 16 to 2185
> BO10849.pep
MKTSGASNTDELNKSSHSKVSKKSTKSRSKSAKLELTGKNSLSASASSSI
ASAVSGGVAVGSLPATPTHLNMVTTPTTPTSSLGNYNLFDASFAVAGSGG
HGLAGGIAGAEASGNSSRMGHQKSYAGFDPRSIKIFWEQHDQTDVELSQD
VCARLAEDASYKVWELINNVKIYSRHSGGVVTYDLVNEVLKDADVPPMLG
AMDSDWDRIDYDGSFYFHSDKIFELSAEFQKEVNLCTPDDADFQSICPVE
DKHMDQLRQCVQSLVTAALFADSKSQTAAVCHAFQTPLMGSIYRVIVSKM
VQLLAFKQQDHLSQRCWRLLRACNYNATANHNACRPEYFNLAEVLVSQLM
APYETIKAPHVDPDPGQTTSIKMEFEEELKVEPDQCHNPETQENPEVMGV
EKQEQEPQMFPGESTMEHTIYKLQSEEEELNPQPEAEHLSSYFACPVGNG
LVDELCETIGQLASQSGYLHAECLFLIKRRLARFFEGRHVSSERDFRYIS
RAVRGLIALGEYAFREFIPYIYKLRVEEIPDSLWPDLAPAAIFLGGHDDV
YLYEWLEYGCGAALQPFLVHYARAYEKMVTRRYVKAKQPAYRIESVPGVR
RLEWSTLAAAMCHGDDPSKALKPKPTLCEAFPDLQSPNLQLNCAGNIRFK
FAGCRPVLLKPKVATVPHSEDSPSSAANGGGGGGASSDILIAKRKLFKPL
TNVRKWSPISGYHYLRIASFLDH
BO10849.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:50:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Saf6-PA | 717 | CG3883-PA | 1..717 | 1..717 | 3771 | 100 | Plus |
| Saf6-PB | 714 | CG3883-PB | 1..714 | 1..717 | 3738 | 99.6 | Plus |
