Clone BO10851 Report

Search the DGRC for BO10851

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:108
Well:51
Vector:pDNR-Dual
Associated Gene/TranscriptHsc70Cb-RA
Protein status:BO10851.pep: validated full length
Sequenced Size:2446

Clone Sequence Records

BO10851.3prime Sequence

939 bp (855 high quality bases) assembled on 2006-04-19

> BO10851.3prime
ATGGTCTAGAAAGCTTGCCTCCACTTCCATGGAGGGATCGTTTCCGGCCG
CGCTCTGGCCATTGTTATCCACATCCATTTTGTCGCCAGAATTGGCCGCT
GGCTCGCCGCCATTCTGTTCCGCATTCGCCTCGTCCTTGGGCGGTGTTGC
TGTCTTGGCCGGAGTTGGCTTCGGTTTCGCCCTGTTGATCACCGAACTGA
CGCACGAATTTAGAGTTTGCACCTCTTGGCGCACGGCGGAAATCTGGACG
GGACTGTCAGCGGTGCGCGGCGACTGTGTGAACTTGGGCAGATTTGCATC
CAGCCACGATTGCGCTTTGTCCGCCGTCTCCGAGATGTTGATGAACTCGG
TTTCCGTTAGATGATCGTACTTGGGCACACCCTTGCGGAACTCGGCCACT
GCCAGACGTGCAATGGCAATGCTGTTCTTCAGCTCATCAAATGCAGCTGG
TCCCTGCTCATAGTCGCTGGCGCGTAGCTTGATGGGATCCGTCTTCTGGT
GCAGGGCCTGCAGGCGGCTGGTATAGATGTCACGCTCGCAGTCCTCGCCA
TCCTCGTACAGCCAGTTCTCGAGATCATTTAACTGCGACACGATTTTCTC
GCGCTCAGCCTCAACCACGTATCGCTCGAAGGGTCCACCCTGCAGTTTGT
TGCGCATATCGTAGACGAACTCCTCCAAGGCATTCTTGGCATCAATGCGT
TCCGTTTCCTTCTGATCGTTGCCAATCATTTTTGACTCTTGCTGTGTGTA
GTTGCTCAGGTCGACGGGGCTGAAGCCGTGTGTGGTGCACTCCAGCGGCA
ATTCGGTGGCTTTGGAAGCCTTCTTCTTTTTATCAGCGCCCTCTTGCTGA
CCATCCGCAGGTTCTCCAGTATTGTTGGTCTGATCGCCTGGTTTTTCTTC
ACTGGCAGCCTGCTCAGCAGCTGCGGCAGCCTCTTCGGC

BO10851.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:11:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG6603-PA 2415 Hsc70Cb-RA 1492..2412 939..19 4605 100 Minus
CG6603-PB 2415 Hsc70Cb-RB 1492..2412 939..19 4605 100 Minus
CG6603-PC 2415 Hsc70Cb-RC 1492..2412 939..19 4605 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 10:39:55
Subject Length Description Subject Range Query Range Score Percent Strand
Hsc70Cb-RI 3590 CG6603-RI 2052..2972 939..19 4605 100 Minus
Hsc70Cb-RF 3159 CG6603-RF 1748..2668 939..19 4605 100 Minus
Hsc70Cb-RE 3184 CG6603-RE 1773..2693 939..19 4605 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 10:39:49
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14042443..14043068 644..19 3130 100 Minus
3L 28110227 3L 14042157..14042360 842..639 1020 100 Minus
3L 28110227 3L 14040496..14040595 939..840 500 100 Minus
Blast to na_te.dros performed 2015-02-01 10:39:52
Subject Length Description Subject Range Query Range Score Percent Strand
jockey 5020 jockey DMLINEJA 5020bp Derived from M22874 (g157823) (Rel. 47, Last updated, Version 5). 3707..3796 778..688 110 62.4 Minus

BO10851.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:51:09 Download gff for BO10851.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6603-PC 1492..2415 16..939 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:08:55 Download gff for BO10851.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6603-PC 1492..2415 16..939 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 16:30:03 Download gff for BO10851.3prime
Subject Subject Range Query Range Percent Splice Strand
Hsc70Cb-RE 1773..2698 13..939 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 12:06:20 Download gff for BO10851.3prime
Subject Subject Range Query Range Percent Splice Strand
Hsc70Cb-RE 1773..2698 13..939 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 12:06:20 Download gff for BO10851.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 14040496..14040594 841..939 100 -> Minus
3L 14042159..14042359 640..840 100 -> Minus
3L 14042448..14043073 13..639 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 16:30:03 Download gff for BO10851.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14033596..14033694 841..939 100 -> Minus
arm_3L 14035259..14035459 640..840 100 -> Minus
arm_3L 14035548..14036173 13..639 99   Minus

BO10851.5prime Sequence

957 bp (815 high quality bases) assembled on 2006-04-19

> BO10851.5prime
GAAGTTATCAGTCGACATGTCCGTGATTGGCATCGATTTTGGCAACGAGA
GCTGCTATGTTGCGGCAGCCCGATCCGGAGGAATTGAGACGCTGGCCAAT
GACTACAGTCTCCGGGCCACGCCCTCCTTTGTGGCCTTCGATGGCAAGAA
GCGTATCATCGGCGTGGCCGCTAAGAACCAGCAGGTGACAAACATGAAAA
ACACAGTTGGCGGATTCAAGCGCCTGCTTGGCCGCAAATTCAACGATCCC
CATGTACAACACGAACTCACGAGCATTCCAGCGCGCGTGGAGGCGCGCGG
TGATGGCAGCATTGGCATCAAGGTGAACTACCTCGGGGAGGATCAGCATT
TCGGACCTGAGCAGCTGACGGCGATGCTCTTCACCAAGCTGAAGGAGACA
TCGGCGGCTGCCATGCAGACGCAGGTTAACGACTGCGTCATCGCCTGTCC
CGTGTTCTTTACCAATGCAGAGCGTAAGGCTCTCCTGGATGCCGCCCAGA
TCGCCGGACTGAACGTCCTGCGATTGATGAACGAAACGACGGCCACCGCG
CTGGCCTACGGCTTCTACAAGAACGATCTGTTCGAGGACAAGCCACGTAA
CGTGATCTTTGTTGACTTTGGGCACTCGTCACTGCAGGCCAGTGCCTGTG
CCTTCACCAAGGGCAAACTGAAGATGCTGGCCAGCACCTGGGACCAGATC
GGTGGACGCGACATTGACTTGGCTCTGGGCGATTACTTCGCCAAGGAGTT
CCAGGAGCGTTACAAGATCAACGCCAAGACCAATGCCCGTGCCAATCTGC
GCCTGTTAACCGAAATCGAAAAGCTGAAGAAGCAGATGTCCGCCAACAGC
ACCNAGCTGCCGTTGAACATTGAGTGCTTCTTGGATGATATCGACGTCTC
GTCGTCCATGCAGCGGTCGCAGATGGAGGAGCTGTGCGCCCCCGTCTTGC
AGCGCGT

BO10851.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:11:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG6603-PA 2415 Hsc70Cb-RA 1..941 17..957 4686 99.8 Plus
CG6603-PB 2415 Hsc70Cb-RB 1..941 17..957 4686 99.8 Plus
CG6603-PC 2415 Hsc70Cb-RC 1..941 17..957 4686 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:49:58
Subject Length Description Subject Range Query Range Score Percent Strand
Hsc70Cb-RI 3590 CG6603-RI 561..1501 17..957 4694 99.9 Plus
Hsc70Cb-RH 3258 CG6603-RH 260..1200 17..957 4694 99.9 Plus
Hsc70Cb-RG 3283 CG6603-RG 285..1225 17..957 4694 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:49:57
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14039048..14039881 124..957 4159 99.9 Plus
3L 28110227 3L 14037644..14037750 17..123 535 100 Plus
Blast to na_te.dros performed on 2015-02-11 14:49:58 has no hits.

BO10851.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:51:10 Download gff for BO10851.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6603-PC 1..941 17..957 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:08:56 Download gff for BO10851.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6603-PC 1..941 17..957 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:01:04 Download gff for BO10851.5prime
Subject Subject Range Query Range Percent Splice Strand
Hsc70Cb-RG 277..1225 10..957 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:09:09 Download gff for BO10851.5prime
Subject Subject Range Query Range Percent Splice Strand
Hsc70Cb-RG 277..1225 10..957 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:09:09 Download gff for BO10851.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 14037636..14037750 10..123 96 -> Plus
3L 14039048..14039881 124..957 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:01:04 Download gff for BO10851.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14030736..14030850 10..123 96 -> Plus
arm_3L 14032148..14032981 124..957 99   Plus

BO10851.complete Sequence

2446 bp (2446 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ638679

> BO10851.complete
GAAGTTATCAGTCGACATGTCCGTGATTGGCATCGATTTTGGCAACGAGA
GCTGCTATGTTGCGGCAGCCCGATCCGGAGGAATTGAGACGCTGGCCAAT
GACTACAGTCTCCGGGCCACGCCCTCCTTTGTGGCCTTCGATGGCAAGAA
GCGTATCATCGGCGTGGCCGCTAAGAACCAGCAGGTGACAAACATGAAAA
ACACAGTTGGCGGATTCAAGCGCCTGCTTGGCCGCAAATTCAACGATCCC
CATGTACAACACGAACTCACGAGCATTCCAGCGCGCGTGGAGGCGCGCGG
TGATGGCAGCATTGGCATCAAGGTGAACTACCTCGGGGAGGATCAGCATT
TCGGACCTGAGCAGCTGACGGCGATGCTCTTCACCAAGCTGAAGGAGACA
TCGGCGGCTGCCATGCAGACGCAGGTTAACGACTGCGTCATCGCCTGTCC
CGTGTTCTTTACCAATGCAGAGCGTAAGGCTCTCCTGGATGCCGCCCAGA
TCGCCGGACTGAACGTCCTGCGATTGATGAACGAAACGACGGCCACCGCG
CTGGCCTACGGCTTCTACAAGAACGATCTGTTCGAGGACAAGCCACGTAA
CGTGATCTTTGTTGACTTTGGGCACTCGTCACTGCAGGCCAGTGCCTGTG
CCTTCACCAAGGGCAAACTGAAGATGCTGGCCAGCACCTGGGACCAGATC
GGTGGACGCGACATTGACTTGGCTCTGGGCGATTACTTCGCCAAGGAGTT
CCAGGAGCGTTACAAGATCAACGCCAAGACCAATGCCCGTGCCAATCTGC
GCCTGTTAACCGAAATCGAAAAGCTGAAGAAGCAGATGTCCGCCAACAGC
ACCAAGCTGCCGTTGAACATTGAGTGCTTCTTGGATGATATCGACGTCTC
GTCGTCCATGCAGCGGTCGCAGATGGAGGAGCTGTGCGCCCCCGTCTTGC
AGCGCGTCGAGCAGACTTTCAAGCGTTTGCTAGCCGAGTCTAAGCTGCAG
CTGGACGACATTCACTCCGTGGAGATCGTTGGCGGAAGCTCACGCATTCC
GTCCGTAAAGCAGCTTATTGAGCAGGTCTTTAACAAGCCGGCTAGCACCA
CTCTTAACCAGGACGAAGCTGTGTCTCGCGGAGCAGCCCTTCAGTGCGCC
ATCATGTCGCCAGCTGTACGCGTCCGAGAGTTTGGCGTCACTGATATACA
GAACTACGCCGTTAAGGTGCTGTGGGACAGTGAGGGCTCCGCTGCTCCGG
GAGAGATCGAGATCTTCCCGCAATACCATGCTTCTCCGTTCAGTCGCCTG
CTGACAATCAACCGCAAGGGACCGTTCAACGTTTCGATTGTGTATGGCCA
ACAGGTGCCCTATCCAGATCAAACGATTGGCGTGTGGAAGGTCAAGGATG
TAAAGCCGACGGAACGCGGCGAGGGTCAGGATGTAAAGCTGAAAGTGCGC
ATCAACAACAATGGCATTGTGCTAATCTCGTCCGCCACTTTGGTGGAAAA
GAAGGAGGCCGAAGAGGCTGCCGCAGCTGCTGAGCAGGCTGCCAGTGAAG
AAAAACCAGGCGATCAGACCAACAATACTGGAGAACCTGCGGATGGTCAG
CAAGAGGGCGCTGATAAAAAGAAGAAGGCTTCCAAAGCCACCGAATTGCC
GCTGGAGTGCACCACACACGGCTTCAGCCCCGTCGACCTGAGCAACTACA
CACAGCAAGAGTCAAAAATGATTGGCAACGATCAGAAGGAAACGGAACGC
ATTGATGCCAAGAATGCCTTGGAGGAGTTCGTCTACGATATGCGCAACAA
ACTGCAGGGTGGACCCTTCGAGCGATACGTGGTTGAGGCTGAGCGCGAGA
AAATCGTGTCGCAGTTAAATGATCTCGAGAACTGGCTGTACGAGGATGGC
GAGGACTGCGAGCGTGACATCTATACCAGCCGCCTGCAGGCCCTGCACCA
GAAGACGGATCCCATCAAGCTACGCGCCAGCGACTATGAGCAGGGACCAG
CTGCATTTGATGAGCTGAAGAACAGCATTGCCATTGCACGTCTGGCAGTG
GCCGAGTTCCGCAAGGGTGTGCCCAAGTACGATCATCTAACGGAAACCGA
GTTCATCAACATCTCGGAGACGGCGGACAAAGCGCAATCGTGGCTGGATG
CAAATCTGCCCAAGTTCACACAGTCGCCGCGCACCGCTGACAGTCCCGTC
CAGATTTCCGCCGTGCGCCAAGAGGTGCAAACTCTAAATTCGTGCGTCAG
TTCGGTGATCAACAGGGCGAAACCGAAGCCAACTCCGGCCAAGACAGCAA
CACCGCCCAAGGACGAGGCGAATGCGGAACAGAATGGCGGCGAGCCAGCG
GCCAATTCTGGCGACAAAATGGATGTGGATAACAATGGCCAGAGCGCGGC
CGGAAACGATCCCTCCATGGAAGTGGAGGCAAGCTTTCTAGACCAT

BO10851.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:18:34
Subject Length Description Subject Range Query Range Score Percent Strand
Hsc70Cb-RI 2415 CG6603-PI 1..2412 17..2428 12060 100 Plus
Hsc70Cb-RF 2415 CG6603-PF 1..2412 17..2428 12060 100 Plus
Hsc70Cb-RE 2415 CG6603-PE 1..2412 17..2428 12060 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:18:35
Subject Length Description Subject Range Query Range Score Percent Strand
Hsc70Cb-RI 3590 CG6603-RI 561..2972 17..2428 12060 100 Plus
Hsc70Cb-RF 3159 CG6603-RF 257..2668 17..2428 12060 100 Plus
Hsc70Cb-RE 3184 CG6603-RE 282..2693 17..2428 12060 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:18:31
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14039048..14040001 124..1077 4770 100 Plus
3L 28110227 3L 14042443..14043068 1803..2428 3130 100 Plus
3L 28110227 3L 14040062..14040595 1074..1607 2670 100 Plus
3L 28110227 3L 14042157..14042360 1605..1808 1020 100 Plus
3L 28110227 3L 14037644..14037750 17..123 535 100 Plus
Blast to na_te.dros performed on 2014-11-27 08:18:33 has no hits.

BO10851.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:56:33 Download gff for BO10851.complete
Subject Subject Range Query Range Percent Splice Strand
Hsc70Cb-RC 1..2415 17..2431 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:13:42 Download gff for BO10851.complete
Subject Subject Range Query Range Percent Splice Strand
Hsc70Cb-RC 382..2806 10..2434 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:30:24 Download gff for BO10851.complete
Subject Subject Range Query Range Percent Splice Strand
Hsc70Cb-RE 282..2693 17..2430 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:56:33 Download gff for BO10851.complete
Subject Subject Range Query Range Percent Splice Strand
Hsc70Cb-RC 382..2806 10..2434 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:15:29 Download gff for BO10851.complete
Subject Subject Range Query Range Percent Splice Strand
Hsc70Cb-RE 282..2693 17..2430 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:15:29 Download gff for BO10851.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14037644..14037750 17..123 100 -> Plus
3L 14039048..14039999 124..1075 100 -> Plus
3L 14040064..14040594 1076..1606 100 -> Plus
3L 14042159..14042359 1607..1807 100 -> Plus
3L 14042448..14043068 1808..2430 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:30:24 Download gff for BO10851.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14030744..14030850 17..123 100 -> Plus
arm_3L 14032148..14033099 124..1075 100 -> Plus
arm_3L 14033164..14033694 1076..1606 100 -> Plus
arm_3L 14035259..14035459 1607..1807 100 -> Plus
arm_3L 14035548..14036168 1808..2430 99   Plus

BO10851.pep Sequence

Translation from 16 to 2446

> BO10851.pep
MSVIGIDFGNESCYVAAARSGGIETLANDYSLRATPSFVAFDGKKRIIGV
AAKNQQVTNMKNTVGGFKRLLGRKFNDPHVQHELTSIPARVEARGDGSIG
IKVNYLGEDQHFGPEQLTAMLFTKLKETSAAAMQTQVNDCVIACPVFFTN
AERKALLDAAQIAGLNVLRLMNETTATALAYGFYKNDLFEDKPRNVIFVD
FGHSSLQASACAFTKGKLKMLASTWDQIGGRDIDLALGDYFAKEFQERYK
INAKTNARANLRLLTEIEKLKKQMSANSTKLPLNIECFLDDIDVSSSMQR
SQMEELCAPVLQRVEQTFKRLLAESKLQLDDIHSVEIVGGSSRIPSVKQL
IEQVFNKPASTTLNQDEAVSRGAALQCAIMSPAVRVREFGVTDIQNYAVK
VLWDSEGSAAPGEIEIFPQYHASPFSRLLTINRKGPFNVSIVYGQQVPYP
DQTIGVWKVKDVKPTERGEGQDVKLKVRINNNGIVLISSATLVEKKEAEE
AAAAAEQAASEEKPGDQTNNTGEPADGQQEGADKKKKASKATELPLECTT
HGFSPVDLSNYTQQESKMIGNDQKETERIDAKNALEEFVYDMRNKLQGGP
FERYVVEAEREKIVSQLNDLENWLYEDGEDCERDIYTSRLQALHQKTDPI
KLRASDYEQGPAAFDELKNSIAIARLAVAEFRKGVPKYDHLTETEFINIS
ETADKAQSWLDANLPKFTQSPRTADSPVQISAVRQEVQTLNSCVSSVINR
AKPKPTPAKTATPPKDEANAEQNGGEPAANSGDKMDVDNNGQSAAGNDPS
MEVEASFLDH

BO10851.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:46:59
Subject Length Description Subject Range Query Range Score Percent Strand
Hsc70Cb-PI 804 CG6603-PI 1..804 1..804 4108 100 Plus
Hsc70Cb-PF 804 CG6603-PF 1..804 1..804 4108 100 Plus
Hsc70Cb-PE 804 CG6603-PE 1..804 1..804 4108 100 Plus
Hsc70Cb-PC 804 CG6603-PC 1..804 1..804 4108 100 Plus
Hsc70Cb-PB 804 CG6603-PB 1..804 1..804 4108 100 Plus