Clone BO10855 Report

Search the DGRC for BO10855

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:108
Well:55
Vector:pDNR-Dual
Associated Gene/Transcriptsimj-RC
Protein status:BO10855.pep: Imported from assembly
Sequenced Size:2770

Clone Sequence Records

BO10855.complete Sequence

2770 bp assembled on 2009-09-17

GenBank Submission: FJ631898

> BO10855.complete
GAAGTTATCAGTCGACATGGCCAAAATGGAGGTCGACGATGTGGTCGACT
TGAGTTTGGGGTCCGGTCGTGACCCGGCGTTGACCATAACGCCGGCTCCG
CCGCCGGCGGCGCTCAGTAATCGGGATCTGCGTGCGCTGACAGCCAACAA
TGCTGGCCTGACCATCACTCCGTCAGCATCGCCGGCGACCAATAATGGCA
CCACCTCCAATAGCAGTAACACAAACTCCAACAGCAGCAGCACCACCACC
ACCACCAACAACAACAACAACAGTAGCAGTAACACCAATAGCTCCAGCGC
AAACAACAATAACAACAACAACAGCATTAACGCCAGTGATGGTGTCACAG
GTGCGACAAGTGGATCCATAGGCGGCGGTCAGGATGAGAACAAGGTTCAG
CGGAGAGTACTGCGACCACGAACCGAACCCAAATCCTATGCCGAGGCCCC
AGACATTGTGTTACTACCCGCTCGCACAAATGGCCGTCAGCAGAATGGAA
ACATCGATTCGGAGACGGATGACGAGGAGATGCCCCCGTATGTGCCCATC
AAGGAGCTGAGCCATGCAGAGCTCAAGGAGCGCGAGAAGAGTCTGAGGAA
GCTGCGGCAGGATCTGCGCAATGAGGAGACCAAACTGATGCTGCTCAAGA
AACTCAAGCAGTCGCAGCAGGTGATGAAGGAGAATCTGGTGGTGACGCCG
ACCAGCGTATCGCCCAACAATCCGCTATCGGCGATACCCGCCGCTCTCAC
CTCGAAGGGATCGCTGAGTGTGACGCCCACGTCGGCGGTACCCCTGCCCG
CCCACAGCAAGGGCAGCAGGAGCAGTTTGAGCGGCAGCGGCGGACCGGCA
GTGAGCATAAGCGCCACCAACAGTCGAACGGGCAGCTCGAGTTCAGCGGC
GGCGGCTGCTTCGGCAATTGCAGCGGCCGCCATGAGCGGCCAACATCGCA
GCGGTAGCAACTCCATACTGCCGCCGCCACGATCATCGCTGCCCGCTGGT
GCCACCTTGGCCGCCGGCACTACCATCACGCCCGCCACCTCCTCATCGCA
CCGCTCGAGCAATTTGCCGCCGCGCACCAACCTGCCGAATCTCACCATCA
CGCCATCGGTGACCATCACGCCCACATCGGCACCGCCCTCCAGTCTGAAA
CCACGCAATGTACCTGGGACCATAAGCAATTCTGTTTCCATCACGCCGGC
GCTACCACTGTCCCAATCGCATCAGAATCAGCACAACGATCAGAAGAATG
ATCGCTCCACGCCAAGAGAAGATGCCCAGACACCAGCTCAAAGACAGGCG
GCGGCTAAAATGGCGCTACGCAAGCAGCTGGAAAAGACGCTGCTTCAGAT
TCCGCCACCAAAGCCACCACCGCCAGAGATGCACTTCATTCCCAATCCCA
GCAACACGGATTTTGTGTATCTTCTTGGTTTGGAAACCGTTGTGGATTAT
CTGACCGTCAACAAGAAGGCCAATGCTGTGGCAGCACCATTCCGTTGTGC
CCAGTGCAAGATTGATTTTACACCCGTGTGGAAGTGGGAGAAACAGACCA
ACAAAGATCCCAAAGTGATTTGCGAGCAGTGCGTCACCTCGAATGTGAAG
AAGGCACTCAAGGCGGAGCACACCAACCGACTGAAACAGGCATTCGTTAA
GGCGCTGCAGCAGGAGCAGGAGATCGAACAGCGTTTGGCCAGCCAGAGCA
GTCCATCGCCGGTGGACAACCATGGATCGAGTGGCGGCGGCAATTCGCTG
TCTGTCTCCGCGGTGTCTAGCAATTCCTCATCGTCGCATATGCAGCGGGA
ACGGGAACAGCTGCAGGCGTCGCATGCATCGGCGGCTGCTGCACTTGTCA
ATCTGCCGCCGTCGGTGACAGTGATACCCACCAAATGCCAGACGCCGACG
CCAGCGACACCGCGTCCAACGCCACCGCCACCACAAAGTCAAGCCACACC
ACCGCCGTCATCTGGAGGATCGCGATCCTCGCGAGCGGCGGCCACCGCCG
CTGCAGCAGCTATTGCCGCTCAGCAGGCGGGTATCCTTAGTCCTGGGCCG
TCGCCAGCGCATCACCATGAGCCGACTACATCCTCGAGATCCTCCCGCAA
CGATCGACTCGATCATCACCATCAGTCGCAGCAGCAACAGCAGCGCGATC
AGCGGGAAAGAGATCAGCAGCAGCGGGATCAGCAGTCGCAACAGCAGGCC
CAAAACTACGACAAATACTCGGCGGCCACCCTGGCGGCGGCTGCTCATCT
GAGTGCTCTTGGCGGCATGGGCGGATTGAATATCAATAGCTTGGCCAGTC
TAGGCAACCTTGGCAATTTGGGCAACCTCAGCCAGCTGGGCAATCTGGCT
GCGCTGGGAGGATTGGGTAATTTTGGCGGAGCATCGACGGGTTCGGCTAA
TCCGGCGGCAGGACTGAGCGGTTCCTCGCCAGCTGCTACGGCGGCAGCCA
TGCAGGCGTTCCAGCAGCAGCTCTTTAGAGGACTTGGTGGCAATCCGCAG
CATATGATGCAGTTCGCACCGCTTTTGTACTCTTACCAAATGGCCATGGC
GCAGGCGGCACAAGTGGCAGCCTTCAACAATAACAACAAGAAGAGCAGCT
CGTCCTCCGGATCGGCGAAGAATTCCAGCAGCTCGAACAGCATGGCGGAA
GTTCAGCGGGCGGCGGAGCTGCAGCGCCAATATCTACTGGAGATGATACC
GCCCCAGCAGCAAAGTGGGGCCAGTGGCAGTCGGCAGAACAACTGGAAGG
CCGCAAGCTTTCTAGACCAT

BO10855.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:41:41
Subject Length Description Subject Range Query Range Score Percent Strand
simj-RC 2739 CG32067-PC 1..2736 17..2752 13680 100 Plus
simj-RA 2751 CG32067-PA 1..2748 17..2752 13525 99.6 Plus
simj-RB 2751 CG32067-PB 1..2748 17..2752 13525 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:41:43
Subject Length Description Subject Range Query Range Score Percent Strand
simj-RC 3604 CG32067-RC 673..3408 17..2752 13680 100 Plus
simj-RA 3616 CG32067-RA 673..3420 17..2752 13525 99.6 Plus
simj-RB 3375 CG32067-RB 432..3179 17..2752 13525 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:41:38
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10687665..10688598 1548..2481 4670 100 Plus
3L 28110227 3L 10685050..10685894 17..861 4225 100 Plus
3L 28110227 3L 10685962..10686263 860..1161 1510 100 Plus
3L 28110227 3L 10687402..10687603 1346..1547 1010 100 Plus
3L 28110227 3L 10688924..10689107 2569..2752 920 100 Plus
3L 28110227 3L 10687236..10687339 1245..1348 520 100 Plus
3L 28110227 3L 10688689..10688780 2479..2570 460 100 Plus
3L 28110227 3L 10687076..10687162 1160..1246 435 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:41:40 has no hits.

BO10855.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-09-17 15:20:19 Download gff for BO10855.complete
Subject Subject Range Query Range Percent Splice Strand
simj-RC 669..3404 17..2754 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:54:56 Download gff for BO10855.complete
Subject Subject Range Query Range Percent Splice Strand
simj-RC 673..3408 17..2754 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:56:45 Download gff for BO10855.complete
Subject Subject Range Query Range Percent Splice Strand
simj-RC 669..3404 17..2754 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:54:40 Download gff for BO10855.complete
Subject Subject Range Query Range Percent Splice Strand
simj-RC 673..3408 17..2754 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:54:40 Download gff for BO10855.complete
Subject Subject Range Query Range Percent Splice Strand
3L 10687405..10687603 1349..1547 100 -> Plus
3L 10685050..10685894 17..861 100 -> Plus
3L 10685964..10686261 862..1159 100 -> Plus
3L 10687076..10687162 1160..1246 100 -> Plus
3L 10687238..10687339 1247..1348 100 -> Plus
3L 10687665..10688597 1548..2480 100 -> Plus
3L 10688691..10688780 2481..2570 100 -> Plus
3L 10688926..10689107 2571..2754 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:54:56 Download gff for BO10855.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10680176..10680262 1160..1246 100 -> Plus
arm_3L 10680338..10680439 1247..1348 100 -> Plus
arm_3L 10678150..10678994 17..861 100 -> Plus
arm_3L 10679064..10679361 862..1159 100 -> Plus
arm_3L 10680505..10680703 1349..1547 100 -> Plus
arm_3L 10680765..10681697 1548..2480 100 -> Plus
arm_3L 10681791..10681880 2481..2570 100 -> Plus
arm_3L 10682026..10682207 2571..2754 98   Plus

BO10855.3prime Sequence

977 bp (863 high quality bases) assembled on 2006-04-19

> BO10855.3prime
ATGGTCTAGAAAGCTTGCGGCCTTCCAGTTGTTCTGCCGACTGCCACTGG
CCCCACTTTGCTGCTGGGGCGGTATCATCTCCAGTAGATATTGGCGCTGC
AGCTCCGCCGCCCGCTGAACTTCCGCCATGCTGTTCGAGCTGCTGGAATT
CTTCGCCGATCCGGAGGACGAGCTGCTCTTCTTGTTGTTATTGTTGAAGG
CTGCCACTTGTGCCGCCTGCGCCATGGCCATTTGGTAAGAGTACAAAAGC
GGTGCGAACTGCATCATATGCTGCGGATTGCCACCAAGTCCTCTAAAGAG
CTGCTGCTGGAACGCCTGCATGGCTGCCGCCGTAGCAGCTGGCGAGGAAC
CGCTCAGTCCTGCCGCCGGATTAGCCGAACCCGTCGATGCTCCGCCAAAA
TTACCCAATCCTCCCAGCGCAGCCAGATTGCCCAGCTGGCTGAGGTTGCC
CAAATTGCCAAGGTTGCCTAGACTGGCCAAGCTATTGATATTCAATCCGC
CCATGCCGCCAAGAGCACTCAGATGAGCAGCCGCCGCCAGGGTGGCCGCC
GAGTATTTGTCGTAGTTTTGGGCCTGCTGTTGCGACTGCTGATCCCGCTG
CTGCTGATCTCTTTCCCGCTGATCGCGCTGCTGTTGCTGCTGCGACTGAT
GGTGATGATCGAGTCGATCGTTGCGGGAGGATCTCGAGGATGTAGTCGGC
TCATGGTGATGCGCTGGCGACGGCCCAGGACTAAGGATACCCGCCTGCTG
AGCGGCAATAGCTGCTGCAGCGGCGGTGGCCGCCGCTCGCGAGGATCGCG
ATCCTCCAGATGACGGCGGTGGTGTGGCTTGACTTTGTGGTGGCGGTGGC
GTTGGACGCGGTGTCGCTGGCGTCGGCGTCTGGCATTTGGTGGGTATCAC
TGTCACCGACGGCGGCAGATTGACAAGTGCAGCAGCCGCCGATGCATGCG
ACGCCTGCAGCTGTTCCCGTTCCCGCT

BO10855.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:11:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG32067-PC 2739 simj-RC 1778..2736 977..19 4795 100 Minus
CG32067-PB 2751 simj-RB 1778..2464 977..291 3435 100 Minus
CG32067-PA 2751 simj-RA 1778..2464 977..291 3435 100 Minus
CG32067-PB 2751 simj-RB 2475..2748 292..19 1370 100 Minus
CG32067-PA 2751 simj-RA 2475..2748 292..19 1370 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 16:53:19
Subject Length Description Subject Range Query Range Score Percent Strand
simj-RC 3604 CG32067-RC 2450..3408 977..19 4795 100 Minus
simj-RD 3640 CG32067-RD 2474..3444 977..19 4665 98.8 Minus
simj-RA 3616 CG32067-RA 2450..3420 977..19 4665 98.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 16:53:12
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10687911..10688598 977..290 3440 100 Minus
3L 28110227 3L 10688924..10689107 202..19 920 100 Minus
3L 28110227 3L 10688689..10688780 292..201 460 100 Minus
Blast to na_te.dros performed on 2015-01-31 16:53:16 has no hits.

BO10855.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:51:18 Download gff for BO10855.3prime
Subject Subject Range Query Range Percent Splice Strand
simj-PC 1778..2739 15..977 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:09:05 Download gff for BO10855.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32067-PC 1778..2739 15..977 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:40:25 Download gff for BO10855.3prime
Subject Subject Range Query Range Percent Splice Strand
simj-RC 2450..3411 15..977 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:52:33 Download gff for BO10855.3prime
Subject Subject Range Query Range Percent Splice Strand
simj-RC 2450..3411 15..977 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:52:33 Download gff for BO10855.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 10687911..10688597 291..977 100 -> Minus
3L 10688691..10688780 201..290 100 -> Minus
3L 10688926..10689110 15..200 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:40:25 Download gff for BO10855.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10681011..10681697 291..977 100 -> Minus
arm_3L 10681791..10681880 201..290 100 -> Minus
arm_3L 10682026..10682210 15..200 98   Minus

BO10855.5prime Sequence

933 bp (860 high quality bases) assembled on 2006-04-19

> BO10855.5prime
GAAGTTATCAGTCGACATGGCCAAAATGGAGGTCGACGATGTGGTCGACT
TGAGTTTGGGGTCCGGTCGTGACCCGGCGTTGACCATAACGCCGGCTCCG
CCGCCGGCGGCGCTCAGTAATCGGGATCTGCGTGCGCTGACAGCCAACAA
TGCTGGCCTGACCATCACTCCGTCAGCATCGCCGGCGACCAATAATGGCA
CCACCTCCAATAGCAGTAACACAAACTCCAACAGCAGCAGCACCACCACC
ACCACCAACAACAACAACAACAGTAGCAGTAACACCAATAGCTCCAGCGC
AAACAACAATAACAACAACAACAGCATTAACGCCAGTGATGGTGTCACAG
GTGCGACAAGTGGATCCATAGGCGGCGGTCAGGATGAGAACAAGGTTCAG
CGGAGAGTACTGCGACCACGAACCGAACCCAAATCCTATGCCGAGGCCCC
AGACATTGTGTTACTACCCGCTCGCACAAATGGCCGTCAGCAGAATGGAA
ACATCGATTCGGAGACGGATGACGAGGAGATGCCCCCGTATGTGCCCATC
AAGGAGCTGAGCCATGCAGAGCTCAAGGAGCGCGAGAAGAGTCTGAGGAA
GCTGCGGCAGGATCTGCGCAATGAGGAGACCAAACTGATGCTGCTCAAGA
AACTCAAGCAGTCGCAGCAGGTGATGAAGGAGAATCTGGTGGTGACGCCG
ACCAGCGTATCGCCCAACAATCCGCTATCGGCGATACCCGCCGCTCTCAC
CTCGAAGGGATCGCTGAGTGTGACGCCCACGTCGGCGGTACCCCTGCCCG
CCCACAGCAAGGGCAGCAGGAGCAGTTTGAGCGGCAGCGGCGGACCGGCA
GTGAGCATAAGCGCCACCNACAGTCGAACGGGCAGCTCGAGTTCAGCGGC
GGCGGCTGCTTCGGCATTGCAGCGGCCGCCATG

BO10855.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:11:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG32067-PB 2751 simj-RB 1..900 17..916 4481 99.8 Plus
CG32067-PA 2751 simj-RA 1..900 17..916 4481 99.8 Plus
CG32067-PC 2739 simj-RC 1..900 17..916 4481 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:19:09
Subject Length Description Subject Range Query Range Score Percent Strand
simj-RE 5110 CG32067-RE 673..1590 17..933 4554 99.8 Plus
simj-RD 3640 CG32067-RD 673..1590 17..933 4554 99.8 Plus
simj-RC 3604 CG32067-RC 673..1590 17..933 4554 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:19:06
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10685050..10685894 17..861 4225 100 Plus
3L 28110227 3L 10685962..10686036 860..933 314 97.3 Plus
Blast to na_te.dros performed on 2015-02-11 10:19:07 has no hits.

BO10855.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:51:19 Download gff for BO10855.5prime
Subject Subject Range Query Range Percent Splice Strand
simj-PB 1..918 17..933 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:09:06 Download gff for BO10855.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32067-PC 1..918 17..933 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:30:07 Download gff for BO10855.5prime
Subject Subject Range Query Range Percent Splice Strand
simj-RC 666..1590 10..933 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:19:16 Download gff for BO10855.5prime
Subject Subject Range Query Range Percent Splice Strand
simj-RC 666..1590 10..933 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:19:16 Download gff for BO10855.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 10685043..10685894 10..861 99 -> Plus
3L 10685964..10686036 862..933 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:30:07 Download gff for BO10855.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10678143..10678994 10..861 99 -> Plus
arm_3L 10679064..10679136 862..933 97   Plus

BO10855.pep Sequence

Translation from 16 to 2770

> BO10855.pep
MAKMEVDDVVDLSLGSGRDPALTITPAPPPAALSNRDLRALTANNAGLTI
TPSASPATNNGTTSNSSNTNSNSSSTTTTTNNNNNSSSNTNSSSANNNNN
NNSINASDGVTGATSGSIGGGQDENKVQRRVLRPRTEPKSYAEAPDIVLL
PARTNGRQQNGNIDSETDDEEMPPYVPIKELSHAELKEREKSLRKLRQDL
RNEETKLMLLKKLKQSQQVMKENLVVTPTSVSPNNPLSAIPAALTSKGSL
SVTPTSAVPLPAHSKGSRSSLSGSGGPAVSISATNSRTGSSSSAAAAASA
IAAAAMSGQHRSGSNSILPPPRSSLPAGATLAAGTTITPATSSSHRSSNL
PPRTNLPNLTITPSVTITPTSAPPSSLKPRNVPGTISNSVSITPALPLSQ
SHQNQHNDQKNDRSTPREDAQTPAQRQAAAKMALRKQLEKTLLQIPPPKP
PPPEMHFIPNPSNTDFVYLLGLETVVDYLTVNKKANAVAAPFRCAQCKID
FTPVWKWEKQTNKDPKVICEQCVTSNVKKALKAEHTNRLKQAFVKALQQE
QEIEQRLASQSSPSPVDNHGSSGGGNSLSVSAVSSNSSSSHMQREREQLQ
ASHASAAAALVNLPPSVTVIPTKCQTPTPATPRPTPPPPQSQATPPPSSG
GSRSSRAAATAAAAAIAAQQAGILSPGPSPAHHHEPTTSSRSSRNDRLDH
HHQSQQQQQRDQRERDQQQRDQQSQQQAQNYDKYSAATLAAAAHLSALGG
MGGLNINSLASLGNLGNLGNLSQLGNLAALGGLGNFGGASTGSANPAAGL
SGSSPAATAAAMQAFQQQLFRGLGGNPQHMMQFAPLLYSYQMAMAQAAQV
AAFNNNNKKSSSSSGSAKNSSSSNSMAEVQRAAELQRQYLLEMIPPQQQS
GASGSRQNNWKAASFLDH

BO10855.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:59:57
Subject Length Description Subject Range Query Range Score Percent Strand
simj-PC 912 CG32067-PC 1..912 1..912 4616 100 Plus
simj-PA 916 CG32067-PA 1..916 1..912 4601 99.6 Plus
simj-PB 916 CG32067-PB 1..916 1..912 4601 99.6 Plus
simj-PD 924 CG32067-PD 1..924 1..912 4582 98.7 Plus
simj-PE 937 CG32067-PE 1..937 1..912 4565 97.2 Plus