Clone Sequence Records
BO10858.3prime Sequence
943 bp (766 high quality bases) assembled on 2006-04-19
> BO10858.3prime
ATGGTCTAGAAAGCTTGCGGCATCACAATTGGGCACATAGATGGCCACGC
AGGTTGATTCCCACACATCGTTGGGCGAGTCCCACGAGTCCTTTTCGTGC
CACCATTCCTTGGTATCCAAGTCGTAGGCCATTGTTTCCGCACTGGCCCG
ATCAATCGACTCCGTGGAGTCCAGTCCGCCCACAAAGAATATTGTTCTGC
CCATCGCGGTCACGCCGGTGTAGAACTTGGGGGCCGGTATCTTGGTCTCC
ACGCTCCACGTGTTAGTCTCAATATCATAGGCATATATGTGCTCCACCAG
AACCCGCCATTCCGTCAAACTCTCGTGCCATCCGCCGCAGGCATAGATGC
GATTATCCACCGCCACCAAAACGTGGTCACAACAGGGCGTGGGCATCGAG
GCCAGCTCCTGCCAGACTTCCGTCTTTGTGTCGAATACCCACATGCTTGC
CAGTATGTTGGCCAAGTGGACGCCACCAGAGATGTAAAGCTTATCGCCCA
CAACGACGCCGGCATGCTGACTGCGATTCTCCTGCAGACTAGGCATATAG
GTCCATACATTCTTGGCGATATCGTAGCGCTCCACGTTGGAGATCATGCG
CAGGGCTTCTTCGTTATCATCGTCCAGAATGCCGCCCACCGCATACAGAT
GCTGAGTGCCCACTGCGTTCAACGAGAAACGGCAGCGATCCTGCTGAATG
GGTGCTATGGTCATCCATGTATTCCTTAGCGGACAGTAGCAGAAGCCAAA
GGGATGGATGTACTCCTTCAAAAAGACATCGTACGCTCCGCCCACGATGA
ACAGTTTGTTGTTCAGTACGGCCGTGCCAAAGTTGCACTGATCGATGTGC
GGAATGGCGGTCAACTCATACCAATTCATTTTCTTTGGCGAAAGCACATT
ATTACATTGGGTCAGGCGTTCACTCGAAGCCCCCGATCTTCAG
BO10858.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:11:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1812-PA | 1851 | CG1812-RA | 974..1848 | 893..19 | 4375 | 100 | Minus |
CG1812-PB | 1626 | CG1812-RB | 749..1623 | 893..19 | 4375 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:48:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1812-RA | 3229 | CG1812-RA | 1286..2212 | 943..19 | 4540 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:48:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 20514353..20514811 | 477..19 | 2295 | 100 | Minus |
X | 23542271 | X | 20513831..20514193 | 836..474 | 1815 | 100 | Minus |
X | 23542271 | X | 20513643..20513752 | 943..836 | 375 | 93.6 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:48:26 has no hits.
BO10858.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:51:24 Download gff for
BO10858.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1812-PB | 697..1626 | 15..943 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:09:13 Download gff for
BO10858.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1812-PB | 697..1626 | 15..943 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:28:56 Download gff for
BO10858.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1812-RA | 1286..2221 | 8..943 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:12:00 Download gff for
BO10858.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1812-RA | 1286..2221 | 8..943 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:12:00 Download gff for
BO10858.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 20513643..20513751 | 837..943 | 96 | -> | Minus |
X | 20513831..20514190 | 477..836 | 100 | -> | Minus |
X | 20514354..20514820 | 8..476 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:28:56 Download gff for
BO10858.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20384670..20384778 | 837..943 | 96 | -> | Minus |
arm_X | 20384858..20385217 | 477..836 | 100 | -> | Minus |
arm_X | 20385381..20385847 | 8..476 | 99 | | Minus |
BO10858.5prime Sequence
898 bp (832 high quality bases) assembled on 2006-04-19
> BO10858.5prime
GAAGTTATCAGTCGACATGGCAGCGACGCCAGCGCCAGCAGTGACGCCGG
CAGCGACAGCAACGTCGGCTGCGGCCAAAATTCCTGTGAATCCCGTGTCC
CCCGAGGAGGAGACCCTTCTGCGGGGCCTCAACAAGCTGCGCAACGAGGA
GAAACTCACGGACGTCACTCTGATCGTCGAGGAGCACCGATTCAAGGCTC
ACCGCGTCGTCCTGGCAGCCAGCAGTGACTACTTTTGCGCCATGTTCGCC
GACTGTGCCATGATTGAGTCGCGTAAGGACGAGATAAATCTCTACGGTAT
TAAAGCCAGGGCCATGGGCTCGATCATTGACTACATATACACATCGATGC
TGGAACTGAACTACGATAACATCGAGGAGATCCTGGCGGCAGCCACGCAC
GTCCAGGTGCGCGAGGTGATTGACCGATGCACGATCTTTCTGGGCGCAAA
GATCGAGATGGAAAACTGCCTGGCCATTGCGGGAATGGCCGATATCTATG
GAATTATGGACTTATCCGAACGGGCCTACCGCTATATGTGCGCTCACTTT
GAGGAGTTCGCGACCACATCGGACTTTAAAGAAATGAAGGTGGACCAGCT
GCGCTTCATCCTCAGCAGCAACTATCCCATTGACGTGGCCGAGCAGGATC
TGGTGCGTCTGGTATGCAGCTTTGCGATCGAACAACAGCTGAATGAGAGC
GCTTTGGGGGATCTGCTGAGGCTGATCAAATGGCAACACATTAGCTATAA
GTCCGTGGACGAACTGAGGAACATGAACTGCTCGCTGGATAAGGGAAAAC
AGCTGCCACTGCCTACCAGCTACTACAACCGAATAAAACAGGAGCACATG
GGGCACCTACTCAACGGAGTGGTGTCCCTGAAAGATCAGTCACTGCCA
BO10858.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:11:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1812-PA | 1851 | CG1812-RA | 1..882 | 17..898 | 4385 | 99.8 | Plus |
CG1812-PB | 1626 | CG1812-RB | 1..657 | 242..898 | 3260 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:33:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1812-RA | 3229 | CG1812-RA | 364..1246 | 16..898 | 4400 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:33:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 20512900..20513603 | 195..898 | 3505 | 99.9 | Plus |
X | 23542271 | X | 20511907..20512088 | 16..197 | 910 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:33:21 has no hits.
BO10858.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:51:25 Download gff for
BO10858.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1812-PA | 1..881 | 17..897 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:09:14 Download gff for
BO10858.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1812-PA | 1..881 | 17..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:47:07 Download gff for
BO10858.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1812-RA | 361..1245 | 9..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:59:25 Download gff for
BO10858.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1812-RA | 361..1245 | 9..897 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:59:25 Download gff for
BO10858.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 20511904..20512087 | 9..196 | 97 | -> | Plus |
X | 20512902..20513602 | 197..897 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:47:07 Download gff for
BO10858.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20382931..20383114 | 9..196 | 97 | -> | Plus |
arm_X | 20383929..20384629 | 197..897 | 99 | | Plus |
BO10858.complete Sequence
1882 bp (1882 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631899
> BO10858.complete
GAAGTTATCAGTCGACATGGCAGCGACGCCAGCGCCAGCAGTGACGCCGG
CAGCGACAGCAACGTCGGCTGCGGCCAAAATTCCTGTGAATCCCGTGTCC
CCCGAGGAGGAGACCCTTCTGCGGGGCCTCAACAAGCTGCGCAACGAGGA
GAAACTCACGGACGTCACTCTGATCGTCGAGGAGCACCGATTCAAGGCTC
ACCGCGTCGTCCTGGCAGCCAGCAGTGACTACTTTTGCGCCATGTTCGCC
GACTGTGCCATGATTGAGTCGCGTAAGGACGAGATAAATCTCTACGGTAT
TAAAGCCAGGGCCATGGGCTCGATCATTGACTACATATACACATCGATGC
TGGAACTGAACTACGATAACATCGAGGAGATCCTGGCGGCAGCCACGCAC
GTCCAGGTGCGCGAGGTGATTGACCGATGCACGATCTTTCTGGGCGCAAA
GATCGAGATGGAAAACTGCCTGGCCATTGCGGGAATGGCCGATATCTATG
GAATTATGGACTTATCCGAACGGGCCTACCGCTATATGTGCGCTCACTTT
GAGGAGTTCGCGACCACATCGGACTTTAAAGAAATGAAGGTGGACCAGCT
GCGCTTCATCCTCAGCAGCAACTATCCCATTGACGTGGCCGAGCAGGATC
TGGTGCGTCTGGTATGCAGCTTTGCGATCGAACAACAGCTGAATGAGAGC
GCTTTGGGGGATCTGCTGAGGCTGATCAAATGGCAACACATTAGCTATAA
GTCCGTGGACGAACTGAGGAACATGAACTGCTCGCTGGATAAGGGAAAAC
AGCTGCCACTGCCTACCAGCTACTACAACCGAATAAAACAGGAGCACATG
GGGCACCTACTCAACGGAGTGGTGTCCCTGAAGGATCAGTCACTGCCACA
GGGACCAACAAACATGCGGGGCATGGAGCTGTGTCTGCTGAAGATCGGGG
GCTTCGAGTGGAACGGCCTGACCAATGTAATAATGTGCTTTTCGCCAAAG
AAAATGAATTGGTATGAGTTGACCGCCATTCCGCACATCGATCAGTGCAA
CTTTGGCACGGCCGTACTGAACAACAAACTGTTCATCGTGGGCGGAGCGT
ACGATGTCTTTTTGAAGGAGTACATCCATCCCTTTGGCTTCTGCTACTGT
CCGCTAAGGAATACATGGATGACCATAGCACCCATTCAGCAGGATCGCTG
CCGTTTCTCGTTGAACGCAGTGGGCACTCAGCATCTGTATGCGGTGGGCG
GCATTCTGGACGATGATAACGAAGAAGCCCTGCGCATGATCTCCAACGTG
GAGCGCTACGATATCGCCAAGAATGTATGGACCTATATGCCTAGTCTGCA
GGAGAATCGCAGTCAGCATGCCGGCGTCGTTGTGGGCGATAAGCTTTACA
TCTCTGGTGGCGTCCACTTGGCCAACATACTGGCAAGCATGTGGGTATTC
GACACAAAGACGGAAGTCTGGCAGGAGCTGGCCTCGATGCCCACGCCCTG
TTGTGACCACGTTTTGGTGGCGGTGGATAATCGCATCTATGCCTGCGGCG
GATGGCACGAGAGTTTGACGGAATGGCGGGTTCTGGTGGAGCACATATAT
GCCTATGATATTGAGACTAACACGTGGAGCGTGGAGACCAAGATACCGGC
CCCCAAGTTCTACACCGGCGTGACCGCGATGGGCAGAACAATATTCTTTG
TGGGCGGACTGGACTCCACGGAGTCGATTGATCGGGCCAGTGCGGAAACA
ATGGCCTACGACTTGGATACCAAGGAATGGTGGCACGAAAAGGACTCGTG
GGACTCGCCCAACGATGTGTGGGAATCAACCTGCGTGGCCATCTATGTGC
CCAATTGTGATGCCGCAAGCTTTCTAGACCAT
BO10858.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:34:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1812-RA | 1851 | CG1812-PA | 1..1848 | 17..1864 | 9240 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:34:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1812-RA | 3229 | CG1812-RA | 364..2212 | 16..1864 | 9245 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:34:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 20512900..20513752 | 195..1047 | 4265 | 100 | Plus |
X | 23542271 | X | 20514353..20514811 | 1406..1864 | 2295 | 100 | Plus |
X | 23542271 | X | 20513831..20514193 | 1047..1409 | 1815 | 100 | Plus |
X | 23542271 | X | 20511907..20512088 | 16..197 | 910 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:34:13 has no hits.
BO10858.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:56:34 Download gff for
BO10858.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1812-RA | 1..1851 | 17..1868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:13:44 Download gff for
BO10858.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1812-RA | 358..2218 | 9..1875 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:18:03 Download gff for
BO10858.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1812-RA | 365..2212 | 17..1866 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:56:34 Download gff for
BO10858.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1812-RA | 358..2218 | 9..1875 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:13:09 Download gff for
BO10858.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1812-RA | 365..2212 | 17..1866 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:13:09 Download gff for
BO10858.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 20513831..20514190 | 1047..1406 | 100 | -> | Plus |
X | 20511908..20512087 | 17..196 | 100 | -> | Plus |
X | 20512902..20513751 | 197..1046 | 100 | -> | Plus |
X | 20514354..20514811 | 1407..1866 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:18:03 Download gff for
BO10858.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20382935..20383114 | 17..196 | 100 | -> | Plus |
arm_X | 20383929..20384778 | 197..1046 | 100 | -> | Plus |
arm_X | 20384858..20385217 | 1047..1406 | 100 | -> | Plus |
arm_X | 20385381..20385838 | 1407..1866 | 99 | | Plus |
BO10858.pep Sequence
Translation from 16 to 1882
> BO10858.pep
MAATPAPAVTPAATATSAAAKIPVNPVSPEEETLLRGLNKLRNEEKLTDV
TLIVEEHRFKAHRVVLAASSDYFCAMFADCAMIESRKDEINLYGIKARAM
GSIIDYIYTSMLELNYDNIEEILAAATHVQVREVIDRCTIFLGAKIEMEN
CLAIAGMADIYGIMDLSERAYRYMCAHFEEFATTSDFKEMKVDQLRFILS
SNYPIDVAEQDLVRLVCSFAIEQQLNESALGDLLRLIKWQHISYKSVDEL
RNMNCSLDKGKQLPLPTSYYNRIKQEHMGHLLNGVVSLKDQSLPQGPTNM
RGMELCLLKIGGFEWNGLTNVIMCFSPKKMNWYELTAIPHIDQCNFGTAV
LNNKLFIVGGAYDVFLKEYIHPFGFCYCPLRNTWMTIAPIQQDRCRFSLN
AVGTQHLYAVGGILDDDNEEALRMISNVERYDIAKNVWTYMPSLQENRSQ
HAGVVVGDKLYISGGVHLANILASMWVFDTKTEVWQELASMPTPCCDHVL
VAVDNRIYACGGWHESLTEWRVLVEHIYAYDIETNTWSVETKIPAPKFYT
GVTAMGRTIFFVGGLDSTESIDRASAETMAYDLDTKEWWHEKDSWDSPND
VWESTCVAIYVPNCDAASFLDH
BO10858.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:46:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1812-PA | 616 | CG1812-PA | 1..616 | 1..616 | 3277 | 100 | Plus |
kel-PA | 689 | CG7210-PA | 147..665 | 38..585 | 468 | 27.7 | Plus |
kel-PB | 1477 | CG7210-PB | 147..665 | 38..585 | 468 | 27.7 | Plus |
dbo-PB | 620 | CG6224-PB | 59..585 | 35..588 | 414 | 26.4 | Plus |
dbo-PA | 623 | CG6224-PA | 59..585 | 35..588 | 414 | 26.4 | Plus |