Clone BO10858 Report

Search the DGRC for BO10858

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:108
Well:58
Vector:pDNR-Dual
Associated Gene/TranscriptCG1812-RA
Protein status:BO10858.pep: validated full length
Sequenced Size:1882

Clone Sequence Records

BO10858.3prime Sequence

943 bp (766 high quality bases) assembled on 2006-04-19

> BO10858.3prime
ATGGTCTAGAAAGCTTGCGGCATCACAATTGGGCACATAGATGGCCACGC
AGGTTGATTCCCACACATCGTTGGGCGAGTCCCACGAGTCCTTTTCGTGC
CACCATTCCTTGGTATCCAAGTCGTAGGCCATTGTTTCCGCACTGGCCCG
ATCAATCGACTCCGTGGAGTCCAGTCCGCCCACAAAGAATATTGTTCTGC
CCATCGCGGTCACGCCGGTGTAGAACTTGGGGGCCGGTATCTTGGTCTCC
ACGCTCCACGTGTTAGTCTCAATATCATAGGCATATATGTGCTCCACCAG
AACCCGCCATTCCGTCAAACTCTCGTGCCATCCGCCGCAGGCATAGATGC
GATTATCCACCGCCACCAAAACGTGGTCACAACAGGGCGTGGGCATCGAG
GCCAGCTCCTGCCAGACTTCCGTCTTTGTGTCGAATACCCACATGCTTGC
CAGTATGTTGGCCAAGTGGACGCCACCAGAGATGTAAAGCTTATCGCCCA
CAACGACGCCGGCATGCTGACTGCGATTCTCCTGCAGACTAGGCATATAG
GTCCATACATTCTTGGCGATATCGTAGCGCTCCACGTTGGAGATCATGCG
CAGGGCTTCTTCGTTATCATCGTCCAGAATGCCGCCCACCGCATACAGAT
GCTGAGTGCCCACTGCGTTCAACGAGAAACGGCAGCGATCCTGCTGAATG
GGTGCTATGGTCATCCATGTATTCCTTAGCGGACAGTAGCAGAAGCCAAA
GGGATGGATGTACTCCTTCAAAAAGACATCGTACGCTCCGCCCACGATGA
ACAGTTTGTTGTTCAGTACGGCCGTGCCAAAGTTGCACTGATCGATGTGC
GGAATGGCGGTCAACTCATACCAATTCATTTTCTTTGGCGAAAGCACATT
ATTACATTGGGTCAGGCGTTCACTCGAAGCCCCCGATCTTCAG

BO10858.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:11:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG1812-PA 1851 CG1812-RA 974..1848 893..19 4375 100 Minus
CG1812-PB 1626 CG1812-RB 749..1623 893..19 4375 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:48:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG1812-RA 3229 CG1812-RA 1286..2212 943..19 4540 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:48:24
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20514353..20514811 477..19 2295 100 Minus
X 23542271 X 20513831..20514193 836..474 1815 100 Minus
X 23542271 X 20513643..20513752 943..836 375 93.6 Minus
Blast to na_te.dros performed on 2015-02-12 04:48:26 has no hits.

BO10858.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:51:24 Download gff for BO10858.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1812-PB 697..1626 15..943 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:09:13 Download gff for BO10858.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1812-PB 697..1626 15..943 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:28:56 Download gff for BO10858.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1812-RA 1286..2221 8..943 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:12:00 Download gff for BO10858.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1812-RA 1286..2221 8..943 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:12:00 Download gff for BO10858.3prime
Subject Subject Range Query Range Percent Splice Strand
X 20513643..20513751 837..943 96 -> Minus
X 20513831..20514190 477..836 100 -> Minus
X 20514354..20514820 8..476 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:28:56 Download gff for BO10858.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 20384670..20384778 837..943 96 -> Minus
arm_X 20384858..20385217 477..836 100 -> Minus
arm_X 20385381..20385847 8..476 99   Minus

BO10858.5prime Sequence

898 bp (832 high quality bases) assembled on 2006-04-19

> BO10858.5prime
GAAGTTATCAGTCGACATGGCAGCGACGCCAGCGCCAGCAGTGACGCCGG
CAGCGACAGCAACGTCGGCTGCGGCCAAAATTCCTGTGAATCCCGTGTCC
CCCGAGGAGGAGACCCTTCTGCGGGGCCTCAACAAGCTGCGCAACGAGGA
GAAACTCACGGACGTCACTCTGATCGTCGAGGAGCACCGATTCAAGGCTC
ACCGCGTCGTCCTGGCAGCCAGCAGTGACTACTTTTGCGCCATGTTCGCC
GACTGTGCCATGATTGAGTCGCGTAAGGACGAGATAAATCTCTACGGTAT
TAAAGCCAGGGCCATGGGCTCGATCATTGACTACATATACACATCGATGC
TGGAACTGAACTACGATAACATCGAGGAGATCCTGGCGGCAGCCACGCAC
GTCCAGGTGCGCGAGGTGATTGACCGATGCACGATCTTTCTGGGCGCAAA
GATCGAGATGGAAAACTGCCTGGCCATTGCGGGAATGGCCGATATCTATG
GAATTATGGACTTATCCGAACGGGCCTACCGCTATATGTGCGCTCACTTT
GAGGAGTTCGCGACCACATCGGACTTTAAAGAAATGAAGGTGGACCAGCT
GCGCTTCATCCTCAGCAGCAACTATCCCATTGACGTGGCCGAGCAGGATC
TGGTGCGTCTGGTATGCAGCTTTGCGATCGAACAACAGCTGAATGAGAGC
GCTTTGGGGGATCTGCTGAGGCTGATCAAATGGCAACACATTAGCTATAA
GTCCGTGGACGAACTGAGGAACATGAACTGCTCGCTGGATAAGGGAAAAC
AGCTGCCACTGCCTACCAGCTACTACAACCGAATAAAACAGGAGCACATG
GGGCACCTACTCAACGGAGTGGTGTCCCTGAAAGATCAGTCACTGCCA

BO10858.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:11:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG1812-PA 1851 CG1812-RA 1..882 17..898 4385 99.8 Plus
CG1812-PB 1626 CG1812-RB 1..657 242..898 3260 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:33:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG1812-RA 3229 CG1812-RA 364..1246 16..898 4400 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:33:19
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20512900..20513603 195..898 3505 99.9 Plus
X 23542271 X 20511907..20512088 16..197 910 100 Plus
Blast to na_te.dros performed on 2015-02-12 04:33:21 has no hits.

BO10858.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:51:25 Download gff for BO10858.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1812-PA 1..881 17..897 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:09:14 Download gff for BO10858.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1812-PA 1..881 17..897 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:47:07 Download gff for BO10858.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1812-RA 361..1245 9..897 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:59:25 Download gff for BO10858.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1812-RA 361..1245 9..897 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:59:25 Download gff for BO10858.5prime
Subject Subject Range Query Range Percent Splice Strand
X 20511904..20512087 9..196 97 -> Plus
X 20512902..20513602 197..897 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:47:07 Download gff for BO10858.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 20382931..20383114 9..196 97 -> Plus
arm_X 20383929..20384629 197..897 99   Plus

BO10858.complete Sequence

1882 bp (1882 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ631899

> BO10858.complete
GAAGTTATCAGTCGACATGGCAGCGACGCCAGCGCCAGCAGTGACGCCGG
CAGCGACAGCAACGTCGGCTGCGGCCAAAATTCCTGTGAATCCCGTGTCC
CCCGAGGAGGAGACCCTTCTGCGGGGCCTCAACAAGCTGCGCAACGAGGA
GAAACTCACGGACGTCACTCTGATCGTCGAGGAGCACCGATTCAAGGCTC
ACCGCGTCGTCCTGGCAGCCAGCAGTGACTACTTTTGCGCCATGTTCGCC
GACTGTGCCATGATTGAGTCGCGTAAGGACGAGATAAATCTCTACGGTAT
TAAAGCCAGGGCCATGGGCTCGATCATTGACTACATATACACATCGATGC
TGGAACTGAACTACGATAACATCGAGGAGATCCTGGCGGCAGCCACGCAC
GTCCAGGTGCGCGAGGTGATTGACCGATGCACGATCTTTCTGGGCGCAAA
GATCGAGATGGAAAACTGCCTGGCCATTGCGGGAATGGCCGATATCTATG
GAATTATGGACTTATCCGAACGGGCCTACCGCTATATGTGCGCTCACTTT
GAGGAGTTCGCGACCACATCGGACTTTAAAGAAATGAAGGTGGACCAGCT
GCGCTTCATCCTCAGCAGCAACTATCCCATTGACGTGGCCGAGCAGGATC
TGGTGCGTCTGGTATGCAGCTTTGCGATCGAACAACAGCTGAATGAGAGC
GCTTTGGGGGATCTGCTGAGGCTGATCAAATGGCAACACATTAGCTATAA
GTCCGTGGACGAACTGAGGAACATGAACTGCTCGCTGGATAAGGGAAAAC
AGCTGCCACTGCCTACCAGCTACTACAACCGAATAAAACAGGAGCACATG
GGGCACCTACTCAACGGAGTGGTGTCCCTGAAGGATCAGTCACTGCCACA
GGGACCAACAAACATGCGGGGCATGGAGCTGTGTCTGCTGAAGATCGGGG
GCTTCGAGTGGAACGGCCTGACCAATGTAATAATGTGCTTTTCGCCAAAG
AAAATGAATTGGTATGAGTTGACCGCCATTCCGCACATCGATCAGTGCAA
CTTTGGCACGGCCGTACTGAACAACAAACTGTTCATCGTGGGCGGAGCGT
ACGATGTCTTTTTGAAGGAGTACATCCATCCCTTTGGCTTCTGCTACTGT
CCGCTAAGGAATACATGGATGACCATAGCACCCATTCAGCAGGATCGCTG
CCGTTTCTCGTTGAACGCAGTGGGCACTCAGCATCTGTATGCGGTGGGCG
GCATTCTGGACGATGATAACGAAGAAGCCCTGCGCATGATCTCCAACGTG
GAGCGCTACGATATCGCCAAGAATGTATGGACCTATATGCCTAGTCTGCA
GGAGAATCGCAGTCAGCATGCCGGCGTCGTTGTGGGCGATAAGCTTTACA
TCTCTGGTGGCGTCCACTTGGCCAACATACTGGCAAGCATGTGGGTATTC
GACACAAAGACGGAAGTCTGGCAGGAGCTGGCCTCGATGCCCACGCCCTG
TTGTGACCACGTTTTGGTGGCGGTGGATAATCGCATCTATGCCTGCGGCG
GATGGCACGAGAGTTTGACGGAATGGCGGGTTCTGGTGGAGCACATATAT
GCCTATGATATTGAGACTAACACGTGGAGCGTGGAGACCAAGATACCGGC
CCCCAAGTTCTACACCGGCGTGACCGCGATGGGCAGAACAATATTCTTTG
TGGGCGGACTGGACTCCACGGAGTCGATTGATCGGGCCAGTGCGGAAACA
ATGGCCTACGACTTGGATACCAAGGAATGGTGGCACGAAAAGGACTCGTG
GGACTCGCCCAACGATGTGTGGGAATCAACCTGCGTGGCCATCTATGTGC
CCAATTGTGATGCCGCAAGCTTTCTAGACCAT

BO10858.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:34:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG1812-RA 1851 CG1812-PA 1..1848 17..1864 9240 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:34:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG1812-RA 3229 CG1812-RA 364..2212 16..1864 9245 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:34:12
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20512900..20513752 195..1047 4265 100 Plus
X 23542271 X 20514353..20514811 1406..1864 2295 100 Plus
X 23542271 X 20513831..20514193 1047..1409 1815 100 Plus
X 23542271 X 20511907..20512088 16..197 910 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:34:13 has no hits.

BO10858.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:56:34 Download gff for BO10858.complete
Subject Subject Range Query Range Percent Splice Strand
CG1812-RA 1..1851 17..1868 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:13:44 Download gff for BO10858.complete
Subject Subject Range Query Range Percent Splice Strand
CG1812-RA 358..2218 9..1875 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:18:03 Download gff for BO10858.complete
Subject Subject Range Query Range Percent Splice Strand
CG1812-RA 365..2212 17..1866 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:56:34 Download gff for BO10858.complete
Subject Subject Range Query Range Percent Splice Strand
CG1812-RA 358..2218 9..1875 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:13:09 Download gff for BO10858.complete
Subject Subject Range Query Range Percent Splice Strand
CG1812-RA 365..2212 17..1866 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:13:09 Download gff for BO10858.complete
Subject Subject Range Query Range Percent Splice Strand
X 20513831..20514190 1047..1406 100 -> Plus
X 20511908..20512087 17..196 100 -> Plus
X 20512902..20513751 197..1046 100 -> Plus
X 20514354..20514811 1407..1866 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:18:03 Download gff for BO10858.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 20382935..20383114 17..196 100 -> Plus
arm_X 20383929..20384778 197..1046 100 -> Plus
arm_X 20384858..20385217 1047..1406 100 -> Plus
arm_X 20385381..20385838 1407..1866 99   Plus

BO10858.pep Sequence

Translation from 16 to 1882

> BO10858.pep
MAATPAPAVTPAATATSAAAKIPVNPVSPEEETLLRGLNKLRNEEKLTDV
TLIVEEHRFKAHRVVLAASSDYFCAMFADCAMIESRKDEINLYGIKARAM
GSIIDYIYTSMLELNYDNIEEILAAATHVQVREVIDRCTIFLGAKIEMEN
CLAIAGMADIYGIMDLSERAYRYMCAHFEEFATTSDFKEMKVDQLRFILS
SNYPIDVAEQDLVRLVCSFAIEQQLNESALGDLLRLIKWQHISYKSVDEL
RNMNCSLDKGKQLPLPTSYYNRIKQEHMGHLLNGVVSLKDQSLPQGPTNM
RGMELCLLKIGGFEWNGLTNVIMCFSPKKMNWYELTAIPHIDQCNFGTAV
LNNKLFIVGGAYDVFLKEYIHPFGFCYCPLRNTWMTIAPIQQDRCRFSLN
AVGTQHLYAVGGILDDDNEEALRMISNVERYDIAKNVWTYMPSLQENRSQ
HAGVVVGDKLYISGGVHLANILASMWVFDTKTEVWQELASMPTPCCDHVL
VAVDNRIYACGGWHESLTEWRVLVEHIYAYDIETNTWSVETKIPAPKFYT
GVTAMGRTIFFVGGLDSTESIDRASAETMAYDLDTKEWWHEKDSWDSPND
VWESTCVAIYVPNCDAASFLDH

BO10858.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:46:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG1812-PA 616 CG1812-PA 1..616 1..616 3277 100 Plus
kel-PA 689 CG7210-PA 147..665 38..585 468 27.7 Plus
kel-PB 1477 CG7210-PB 147..665 38..585 468 27.7 Plus
dbo-PB 620 CG6224-PB 59..585 35..588 414 26.4 Plus
dbo-PA 623 CG6224-PA 59..585 35..588 414 26.4 Plus