Clone BO10865 Report

Search the DGRC for BO10865

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:108
Well:65
Vector:pDNR-Dual
Associated Gene/Transcriptnmo-RA
Protein status:BO10865.pep: validated full length
Sequenced Size:1276

Clone Sequence Records

BO10865.3prime Sequence

942 bp (857 high quality bases) assembled on 2006-04-19

> BO10865.3prime
ATGGTCTAGAAAGCTTGCTTGGCTGGCGAAACTCTTGAAGGCTGCACTCT
GTGGATTGATGCACAGCGGCACACGACCCGTTTGCAGCTGCTCGGCAATG
AACTTGTGCATCTCCTCTTTGACCTGCTGCACGGATGTCAGCTTACGTTC
CCACAGATCATCGAAGGGCTGGCCGGCGGAGGGCTCAAAATCAGCCGTAT
ACTGACGCATTCCGGCTGAGGTAGTGAAGCAGCATTTGCACATGCACGAG
TGATAGCGCAGACGCCCCTCATCCAGATACGGATGCGCCAGGGCATCTGT
CACGGAGATGCGCTTATCCGGATCGAAGACGAGCATCTGGCAGAGCAAGT
GCACCGCCTCGTGCGTGGCATGCGAGCTGAGTGTGTAGAGCACCGAGAAG
GATGGCGGCTTGGGCGCCCGGCGCAACATGTGGGTGCGGGCGCCCTCGCA
GGCGTGACGCATATCCTCCATGGTGGGCGTGCCAAGCAGCTCGGTAATCA
GCTCCAGCTGCTGCACAGGATTCTGTGCCTGGAAGAGGATGCGACGGCCC
AGCAGCTCGCCAAAAATGCAGCCCACCGACCATACATCCACCGCCGACGA
GTAGTGGCGAGCGCCCATCAGAATCTCCGGTGCGCGATAGTACTGGGTGA
CCACCTCTTGGGTCATGTGCTTGGCCTGATCCGGCTCCTCGACGCGGGCC
AATCCAAAGTCACAGATCTTGAGCACGCAATTCGAGTTGACCAGCAGATT
GCCCGGCTTGATGTCGCGATGCAGGATGCGGGCCGAGTGCAGATATTTGA
GGCCGCGCAGGATCTGGTACAGGAACACCTTGATGTGGTCGGCGGACAGG
TGCTGTGGCGACACGATTATCTTGTGCAGATCCGATTGCAGCAGCTCCGT
TATCACATAGATTTCTTGAAAGAAATCCAAATGCGGGGGGCT

BO10865.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:12:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG7892-PA 1245 nmo-RA 325..1242 936..19 4590 100 Minus
CG7892-PB 1245 nmo-RB 325..1242 936..19 4590 100 Minus
CG7892-PC 1245 nmo-RC 325..1242 936..19 4590 100 Minus
CG7892-PE 1293 nmo-RE 325..1238 936..23 4570 100 Minus
CG7892-PF 1293 nmo-RF 325..1238 936..23 4570 100 Minus
CG7892-PG 1293 nmo-RG 325..1238 936..23 4570 100 Minus
CG7892-PD 603 nmo-RD 1..600 618..19 3000 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:19:51
Subject Length Description Subject Range Query Range Score Percent Strand
nmo-RC 2624 CG7892-RC 872..1789 936..19 4590 100 Minus
nmo-RB 3131 CG7892-RB 1379..2296 936..19 4590 100 Minus
nmo-RA 5131 CG7892-RA 1043..1960 936..19 4590 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:19:43
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8046570..8047162 910..318 2965 100 Minus
3L 28110227 3L 8047245..8047447 319..117 1015 100 Minus
3L 28110227 3L 8047505..8047600 118..23 480 100 Minus
Blast to na_te.dros performed on 2015-02-10 22:19:47 has no hits.

BO10865.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:51:36 Download gff for BO10865.3prime
Subject Subject Range Query Range Percent Splice Strand
nmo-PB 320..1245 16..942 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:09:28 Download gff for BO10865.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7892-PB 320..1245 16..942 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:55:49 Download gff for BO10865.3prime
Subject Subject Range Query Range Percent Splice Strand
nmo-RA 1038..1960 19..942 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:00:46 Download gff for BO10865.3prime
Subject Subject Range Query Range Percent Splice Strand
nmo-RA 1038..1960 19..942 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:00:46 Download gff for BO10865.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 8047246..8047447 117..318 100 -> Minus
3L 8047507..8047605 18..116 96   Minus
3L 8045916..8045946 911..942 93 -> Minus
3L 8046570..8047161 319..910 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:55:49 Download gff for BO10865.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8039016..8039046 911..942 93 -> Minus
arm_3L 8040346..8040547 117..318 100 -> Minus
arm_3L 8040607..8040705 18..116 96   Minus
arm_3L 8039670..8040261 319..910 100 -> Minus

BO10865.5prime Sequence

946 bp (808 high quality bases) assembled on 2006-04-19

> BO10865.5prime
GAAGTTATCAGTCGACATGAGCGTTTCGATGTCACTGGTACAGGGTGGTG
CTGCCGGTGGTGCGCCACAGGGCGCCAGCGCAATCTTGGCCGCAGCGGCT
CCCTACTATCAACCGCCGGCTGTTCCCCAGGATGTTCAGCCGGATCGTCC
TATCGGCTATGGAGCATTCGGAGTTGTCTGGGCCGTCACAGATCCTCGCG
ATGGACGACGAGTGGCATTGAAGAAGCTGCCAAATGTGTTCCAATCGTTG
GTCTCATCGAAGCGCGTTTTTCGCGAGCTGAAAATGCTGTGCTTCTTCAA
GCATGAAAATGTTCTTTCAGCTCTGGACATTCTACAGCCACCGCATTTGG
ATTTCTTTCAAGAAATCTATGTGATAACGGAGCTGCTGCAATCGGATCTG
CACAAGATAATCGTGTCGCCACAGCACCTGTCCGCCGACCACATCAAGGT
GTTCCTGTACCAGATCCTGCGCGGCCTCAAATATCTGCACTCGGCCCGCA
TCCTGCATCGCGACATCAAGCCGGGCAATCTGCTGGTCAACTCGAATTGC
GTGCTCAAGATCTGTGACTTTGGATTGGCCCGCGTCGAGGAGCCGGATCA
GGCCAAGCACATGACCCAAGAGGTGGTCACCCAGTACTATCGCGCACCGG
AGATTCTGATGGGCGCTCGCCACTACTCGTCGGCGGTGGATGTATGGTCG
GTGGGCTGCATTTTTGGCGAGCTGCTGGGCCGTCGCATCCTCTTCCAGGC
ACAGAATCCTGTGCAGCAGCTGGAGCTGATTACCGAGCTGCTTGGCACGC
CCACCATGGAGGATATGCGTCACGCCTGCGAGGGCGCCCGCACCCACATG
TTGCGCCGGGCGCCCAAGCCGCCATCTTTCTCGGTGCTCTACACACTCAG
CTCGCATGCCACGCACGAGGCCGGTGCACTTGCTCTGCCAGATGCT

BO10865.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:12:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG7892-PA 1245 nmo-RA 1..905 17..921 4500 99.8 Plus
CG7892-PB 1245 nmo-RB 1..905 17..921 4500 99.8 Plus
CG7892-PE 1293 nmo-RE 1..905 17..921 4500 99.8 Plus
CG7892-PC 1245 nmo-RC 1..905 17..921 4500 99.8 Plus
CG7892-PF 1293 nmo-RF 1..905 17..921 4500 99.8 Plus
CG7892-PG 1293 nmo-RG 1..905 17..921 4500 99.8 Plus
CG7892-PD 603 nmo-RD 1..263 659..921 1290 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:54:13
Subject Length Description Subject Range Query Range Score Percent Strand
nmo-RH 6235 CG7892-RH 719..1647 17..946 4610 99.8 Plus
nmo-RG 2250 CG7892-RG 548..1476 17..946 4610 99.8 Plus
nmo-RF 2757 CG7892-RF 1055..1983 17..946 4610 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:54:06
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8046570..8047148 367..946 2835 99.7 Plus
3L 28110227 3L 7980819..7980983 17..181 825 100 Plus
3L 28110227 3L 8039874..8040006 180..312 665 100 Plus
3L 28110227 3L 8045891..8045950 311..370 285 98.3 Plus
Blast to na_te.dros performed on 2015-02-13 00:54:09 has no hits.

BO10865.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:51:37 Download gff for BO10865.5prime
Subject Subject Range Query Range Percent Splice Strand
nmo-PF 1..929 17..946 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:09:29 Download gff for BO10865.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7892-PA 1..929 17..946 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 11:03:52 Download gff for BO10865.5prime
Subject Subject Range Query Range Percent Splice Strand
nmo-RF 1050..1983 9..946 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:49:47 Download gff for BO10865.5prime
Subject Subject Range Query Range Percent Splice Strand
nmo-RF 1050..1983 9..946 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:49:47 Download gff for BO10865.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 7980814..7980982 9..180 98 -> Plus
3L 8039875..8040004 181..310 100 -> Plus
3L 8045891..8045946 311..366 100 -> Plus
3L 8046570..8047148 367..946 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 11:03:52 Download gff for BO10865.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7973914..7974082 9..180 98 -> Plus
arm_3L 8032975..8033104 181..310 100 -> Plus
arm_3L 8038991..8039046 311..366 100 -> Plus
arm_3L 8039670..8040248 367..946 99   Plus

BO10865.complete Sequence

1276 bp (1276 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ631903

> BO10865.complete
GAAGTTATCAGTCGACATGAGCGTTTCGATGTCACTGGTACAGGGTGGTG
CTGCCGGTGGTGCGCCACAGGGCGCCAGCGCAATCTTGGCCGCAGCGGCT
CCCTACTATCAACCGCCGGCTGTTCCCCAGGATGTTCAGCCGGATCGTCC
TATCGGCTATGGAGCATTCGGAGTTGTCTGGGCCGTCACAGATCCTCGCG
ATGGACGACGAGTGGCATTGAAGAAGCTGCCAAATGTGTTCCAATCGTTG
GTCTCATCGAAGCGCGTTTTTCGCGAGCTGAAAATGCTGTGCTTCTTCAA
GCATGAAAATGTTCTTTCAGCTCTGGACATTCTACAGCCACCGCATTTGG
ATTTCTTTCAAGAAATCTATGTGATAACGGAGCTGCTGCAATCGGATCTG
CACAAGATAATCGTGTCGCCACAGCACCTGTCCGCCGACCACATCAAGGT
GTTCCTGTACCAGATCCTGCGCGGCCTCAAATATCTGCACTCGGCCCGCA
TCCTGCATCGCGACATCAAGCCGGGCAATCTGCTGGTCAACTCGAATTGC
GTGCTCAAGATCTGTGACTTTGGATTGGCCCGCGTCGAGGAGCCGGATCA
GGCCAAGCACATGACCCAAGAGGTGGTCACCCAGTACTATCGCGCACCGG
AGATTCTGATGGGCGCTCGCCACTACTCGTCGGCGGTGGATGTATGGTCG
GTGGGCTGCATTTTTGGCGAGCTGCTGGGCCGTCGCATCCTCTTCCAGGC
ACAGAATCCTGTGCAGCAGCTGGAGCTGATTACCGAGCTGCTTGGCACGC
CCACCATGGAGGATATGCGTCACGCCTGCGAGGGCGCCCGCACCCACATG
TTGCGCCGGGCGCCCAAGCCGCCATCCTTCTCGGTGCTCTACACACTCAG
CTCGCATGCCACGCACGAGGCGGTGCACTTGCTCTGCCAGATGCTCGTCT
TCGATCCGGATAAGCGCATCTCCGTGACAGATGCCCTGGCGCATCCGTAT
CTGGATGAGGGGCGTCTGCGCTATCACTCGTGCATGTGCAAATGCTGCTT
CACTACCTCAGCCGGAATGCGTCAGTATACGGCTGATTTTGAGCCCTCCG
CCGGCCAGCCCTTCGATGATCTGTGGGAACGTAAGCTGACATCCGTGCAG
CAGGTCAAAGAGGAGATGCACAAGTTCATTGCCGAGCAGCTGCAAACGGG
TCGTGTGCCGCTGTGCATCAATCCACAGAGTGCAGCCTTCAAGAGTTTCG
CCAGCCAAGCAAGCTTTCTAGACCAT

BO10865.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:37:56
Subject Length Description Subject Range Query Range Score Percent Strand
nmo-RC 1245 CG7892-PC 1..1242 17..1258 6210 100 Plus
nmo-RB 1245 CG7892-PB 1..1242 17..1258 6210 100 Plus
nmo-RA 1245 CG7892-PA 1..1242 17..1258 6210 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:37:59
Subject Length Description Subject Range Query Range Score Percent Strand
nmo-RC 2624 CG7892-RC 548..1789 17..1258 6210 100 Plus
nmo-RB 3131 CG7892-RB 1055..2296 17..1258 6210 100 Plus
nmo-RA 5131 CG7892-RA 719..1960 17..1258 6210 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:37:54
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8046570..8047162 367..959 2965 100 Plus
3L 28110227 3L 8047245..8047447 958..1160 1015 100 Plus
3L 28110227 3L 7980819..7980983 17..181 825 100 Plus
3L 28110227 3L 8039874..8040006 180..312 665 100 Plus
3L 28110227 3L 8047505..8047600 1159..1254 480 100 Plus
3L 28110227 3L 8045891..8045950 311..370 285 98.3 Plus
Blast to na_te.dros performed on 2014-11-28 08:37:55 has no hits.

BO10865.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:48:52 Download gff for BO10865.complete
Subject Subject Range Query Range Percent Splice Strand
nmo-RC 1..1245 17..1261 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:01:06 Download gff for BO10865.complete
Subject Subject Range Query Range Percent Splice Strand
nmo-RC 545..1786 17..1260 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:34 Download gff for BO10865.complete
Subject Subject Range Query Range Percent Splice Strand
nmo-RA 719..1960 17..1260 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:48:53 Download gff for BO10865.complete
Subject Subject Range Query Range Percent Splice Strand
nmo-RC 540..1786 9..1258 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:21:55 Download gff for BO10865.complete
Subject Subject Range Query Range Percent Splice Strand
nmo-RA 719..1960 17..1260 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:21:55 Download gff for BO10865.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7980819..7980982 17..180 100 -> Plus
3L 8039875..8040004 181..310 100 -> Plus
3L 8045891..8045946 311..366 100 -> Plus
3L 8046570..8047161 367..958 100 -> Plus
3L 8047246..8047447 959..1160 100 -> Plus
3L 8047507..8047605 1161..1260 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:34 Download gff for BO10865.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8040346..8040547 959..1160 100 -> Plus
arm_3L 7973919..7974082 17..180 100 -> Plus
arm_3L 8032975..8033104 181..310 100 -> Plus
arm_3L 8038991..8039046 311..366 100 -> Plus
arm_3L 8039670..8040261 367..958 100 -> Plus
arm_3L 8040607..8040705 1161..1260 96   Plus

BO10865.pep Sequence

Translation from 16 to 1276

> BO10865.pep
MSVSMSLVQGGAAGGAPQGASAILAAAAPYYQPPAVPQDVQPDRPIGYGA
FGVVWAVTDPRDGRRVALKKLPNVFQSLVSSKRVFRELKMLCFFKHENVL
SALDILQPPHLDFFQEIYVITELLQSDLHKIIVSPQHLSADHIKVFLYQI
LRGLKYLHSARILHRDIKPGNLLVNSNCVLKICDFGLARVEEPDQAKHMT
QEVVTQYYRAPEILMGARHYSSAVDVWSVGCIFGELLGRRILFQAQNPVQ
QLELITELLGTPTMEDMRHACEGARTHMLRRAPKPPSFSVLYTLSSHATH
EAVHLLCQMLVFDPDKRISVTDALAHPYLDEGRLRYHSCMCKCCFTTSAG
MRQYTADFEPSAGQPFDDLWERKLTSVQQVKEEMHKFIAEQLQTGRVPLC
INPQSAAFKSFASQASFLDH

BO10865.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:31:22
Subject Length Description Subject Range Query Range Score Percent Strand
nmo-PC 414 CG7892-PC 1..414 1..414 2170 100 Plus
nmo-PB 414 CG7892-PB 1..414 1..414 2170 100 Plus
nmo-PA 414 CG7892-PA 1..414 1..414 2170 100 Plus
nmo-PH 430 CG7892-PH 1..413 1..413 2165 100 Plus
nmo-PG 430 CG7892-PG 1..413 1..413 2165 100 Plus