Clone BO10868 Report

Search the DGRC for BO10868

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:108
Well:68
Vector:pDNR-Dual
Associated Gene/TranscriptCG2694-RB
Protein status:BO10868.pep:
Sequenced Size:2053

Clone Sequence Records

BO10868.3prime Sequence

919 bp (841 high quality bases) assembled on 2006-04-19

> BO10868.3prime
ATGGTCTAGAAAGCTTGCTTCCGTGGCGGCTGTCATCTTCGCGAACATTT
CGTTGAGTAGCGCCATCTTCGAGGAGTGTGTGACGCCCCCCTCCGCGCCC
AGCTTCAAATACTTGTCACGGATGAAACACTTGAACGGTGTCATCGTCCG
ATCGGAACGGGCGCCCTCGTGCATGTTCGCCTTGCTAACGGGCTTCACGC
TCACCTCGAACTGGCAGTAGTAGCAGCGTATGTTGTACGATTTCAAGTCG
GCCAAGCCGTAGGAGGAACGGCTGCACATGCTGCACGTATACATGAAGCT
AGCTATGCACTCCATGAGGGCGGGCACCTCCGGAAAGGCCATCTTCGCCT
GGTAGGTCCATCTGCGGCAGTTGTCGCCGTGACCCAACTCCCGGTTGAAC
AGGAAAGCCGCCACATGGCACATCTCGTGCAGCAGGAGATAGATAAGCTC
GGCCGCAGTGTCTATGCTGTGCAGAAGCAGGATCTGTGCTGTGCGCCTGC
CGGAGGCGTCGAAGCCAAGCTCGCATTTCCAGCGCTTCTTCATTGCGTGC
TTCCAAACAATGGGCACCTGCAGGCCACAGTGGAAGACCGCGTGATTGAA
CATGTTGAACAGAACCTTGGCCAGTGCCACCTTAGATTGCTGGAAATTGG
TCCGCCGGAAGGTGAGGGCCAGCGGATGGCACATGTTGAGCGAGACTGAC
GGTCTGAGCGACTGGACGAAACCGTAGAAATGTGGGTGCCGCTCCAGGCG
GGCTACACAGCTCTTGTGGCGGCGGCAGTTGGTGGCTAGTTGCTTTTGGC
TGGGAAGCTCGCTTAGATCAATGGGCTCCTTGACAGAGTCTGGTGTTTTC
TTCTGAAAGCAGTCCAAATTCACCTGGATTATAGAGTCATCCATGTGCTT
AGTCTGGAGCTCATTCACG

BO10868.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:12:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG2694-PA 2478 CG2694-RA 1575..2475 919..19 4505 100 Minus
CG2694-PB 2022 CG2694-RB 1119..2019 919..19 4505 100 Minus
CG2694-PC 2022 CG2694-RC 1119..2019 919..19 4505 100 Minus
CG11322-PA 1479 CG11322-RA 859..951 633..541 315 93.5 Minus
CG11322-PA 1479 CG11322-RA 1056..1155 436..337 300 92 Minus
CG11322-PA 1479 CG11322-RA 1270..1302 225..193 165 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:26:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG2694-RD 3066 CG2694-RD 1617..2517 919..19 4505 100 Minus
CG2694-RB 3152 CG2694-RB 1703..2603 919..19 4505 100 Minus
CG2694-RA 3075 CG2694-RA 1626..2526 919..19 4505 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:26:01
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2716145..2716706 919..358 2810 100 Minus
X 23542271 X 2716765..2717105 359..19 1705 100 Minus
2L 23513712 2L 6758086..6758870 50..831 1475 79.5 Plus
Blast to na_te.dros performed on 2015-02-11 11:26:03 has no hits.

BO10868.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:51:42 Download gff for BO10868.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2694-PC 1119..2022 18..919 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:09:37 Download gff for BO10868.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2694-PC 1119..2022 18..919 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 21:55:47 Download gff for BO10868.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2694-RA 1626..2531 12..919 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:40:00 Download gff for BO10868.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2694-RA 1626..2531 12..919 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:40:00 Download gff for BO10868.3prime
Subject Subject Range Query Range Percent Splice Strand
X 2716145..2716705 359..919 100 -> Minus
X 2716766..2717110 12..358 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 21:55:47 Download gff for BO10868.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 2610178..2610738 359..919 100 -> Minus
arm_X 2610799..2611143 12..358 99   Minus

BO10868.5prime Sequence

870 bp (842 high quality bases) assembled on 2006-04-19

> BO10868.5prime
GAAGTTATCAGTCGACATGTCCGCGAAGCCAAGTGCCAATTCGGAGGACA
TCCTTCTGGCCGGCCTGCTCCAGGACTGGAAACTAGAGGACCATGACAAC
GCACAGATTGGCTGCGACCCAGCGCCCATGCCGGCCAGTCAATCCGAATT
GGCACTGGTTCATTTGAAGTTGCCGTGCAAGACGCCCCAATCCCAGCCCC
AGGTGGAAGCCCATCAAAATGCTTCAGTTGCGACCGTCAACAGCGACAGC
GGAAGCATAATACTAGTGTCCGATGATTCCTCAGCTACGGCGTGCAGCTT
CCTTCACTCGTCCGAGCTCTGTAACTCCTCCGACTTCGAAGAACTGCGCA
AGGAGTTCACCGAGGACTCCTCATACATCGATCTCTCACTTGATTCGGGC
AGCAGCAATCCTAGTGCCATTGAAACCGACATGAAGACACACAAACTGGG
CGCGAAGCGCAGATCGCCGCAGACCAAGGGCGATGTGTTGGCCAAAAAGA
TTTCTTACCAGAATCTGAACGAGATGAACATCTCCTCGAATCAACCCGTG
GTGACGCGCAGTGGTCGTGTTGTGGTCTCACGTCCGAACCAGCAGTTTGA
CTACTCCTCCTCCTCCCAGTCGAAGGGCGATGGCGAGGAGGACTCCGACG
AGGTGTCACTGGATGCCGACGACGATGAGTATGAGGGAGAAGATTTCGAT
CAGCTCAAGTGGACGGAGCGCAAACGGCGTAGCTTTAGAAACACCAGCTT
AGCCTTCAGCCCCGATGGCAGCCGCTCGTCGCCGGAGGCAACACCTCCGA
TGGTCTATGTCGAATTGGGCGGCAAAATCGTGATCATTAGGGATAAACCA
CAGCCCAATATCGTTCTGGA

BO10868.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:12:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG2694-PA 2478 CG2694-RA 457..1310 17..870 4270 100 Plus
CG2694-PB 2022 CG2694-RB 1..854 17..870 4270 100 Plus
CG2694-PC 2022 CG2694-RC 1..854 17..870 4270 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:42:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG2694-RD 3066 CG2694-RD 494..1352 12..870 4280 99.9 Plus
CG2694-RB 3152 CG2694-RB 580..1438 12..870 4280 99.9 Plus
CG2694-RA 3075 CG2694-RA 503..1361 12..870 4280 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:42:54
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2714885..2715280 12..407 1965 99.7 Plus
X 23542271 X 2715514..2715880 504..870 1835 100 Plus
X 23542271 X 2715338..2715433 408..503 480 100 Plus
Blast to na_te.dros performed on 2015-02-12 06:42:56 has no hits.

BO10868.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:51:43 Download gff for BO10868.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2694-PC 1..853 17..869 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:09:37 Download gff for BO10868.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2694-PC 1..853 17..869 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 13:41:10 Download gff for BO10868.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2694-RA 496..1360 5..869 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:17:35 Download gff for BO10868.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2694-RA 496..1360 5..869 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:17:35 Download gff for BO10868.5prime
Subject Subject Range Query Range Percent Splice Strand
X 2714878..2715280 5..407 99 -> Plus
X 2715338..2715433 408..503 100 -> Plus
X 2715514..2715879 504..869 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 13:41:10 Download gff for BO10868.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 2608911..2609313 5..407 99 -> Plus
arm_X 2609371..2609466 408..503 100 -> Plus
arm_X 2609547..2609912 504..869 100   Plus

BO10868.complete Sequence

2053 bp assembled on 2008-01-16

GenBank Submission: FJ631905

> BO10868.complete
GAAGTTATCAGTCGACATGTCCGCGAAGCCAAGTGCCAATTCGGAGGACA
TCCTTCTGGCCGGCCTGCTCCAGGACTGGAAACTAGAGGACCATGACAAC
GCACAGATTGGCTGCGACCCAGCGCCCATGCCGGCCAGTCAATCCGAATT
GGCACTGGTTCATTTGAAGTTGCCGTGCAAGACGCCCCAATCCCAGCCCC
AGGTGGAAGCCCATCAAAATGCTTCAGTTGCGACCGTCAACAGCGACAGC
GGAAGCATAATACTAGTGTCCGATGATTCCTCAGCTACGGCGTGCAGCTT
CCTTCACTCGTCCGAGCTCTGTAACTCCTCCGACTTCGAAGAACTGCGCA
AGGAGTTCACCGAGGACTCCTCATACATCGATCTCTCACTTGATTCGGGC
AGCAGCAATCCTAGTGCCATTGAAACCGACATGAAGACACACAAACTGGG
CGCGAAGCGCAGATCGCCGCAGACCAAGGGCGATGTGTTGGCCAAAAAGA
TTTCTTACCAGAATCTGAACGAGATGAACATCTCCTCGAATCAACCCGTG
GTGACGCGCAGTGGTCGTGTTGTGGTCTCACGTCCGAACCAGCAGTTTGA
CTACTCCTCCTCCTCCCAGTCGAAGGGCGATGGCGAGGAGGACTCCGACG
AGGTGTCACTGGATGCCGACGACGATGAGTATGAGGGAGAAGATTTCGAT
CAGCTCAAGTGGACGGAGCGCAAACGGCGTAGCTTTAGAAACACCAGCTT
AGCCTTCAGCCCCGATGGCAGCCGCTCGTCGCCGGAGGCAACACCTCCGA
TGGTCTATGTCGAATTGGGCGGCAAAATCGTGATCATTAGGGATAAACCA
CAGCCCAATATCGTTCTGGAAGACGATAAGGAACTCAAGACGCAGATGCA
CAAGTTTTTGGGTCTGATTCCATCACGTCGCAAGCTCTTCGATCCGTCGG
AATACAATATGGATCGGGGGGATATTGAGATGGATGTGTACGTACCGACC
AGTCTTGTTACCAATCCATCACCTAGGTCCTCACCAAGCCCAGTTACTCC
ATCGGCCAGGTCACGAATATGGCAGGAAACAACGCCGACATCCATTTGCT
CCAACTTGAATTTATCGCATACCTACACACCGACCGTGAATGAGCTCCAG
ACTAAGCACATGGATGACTCTATAATCCAGGTGAATTTGGACTGCTTTCA
GAAGAAAACACCAGACTCTGTCAAGGAGCCCATTGATCTAAGCGAGCTTC
CCAGCCAAAAGCAACTAGCCACCAACTGCCGCCGCCACAAGAGCTGTGTA
GCCCGCCTGGAGCGGCACCCACATTTCTACGGTTTCGTCCAGTCGCTCAG
ACCGTCAGTCTCGCTCAACATGTGCCATCCGCTGGCCCTCACCTTCCGGC
GGACCAATTTCCAGCAATCTAAGGTGGCACTGGCCAAGGTTCTGTTCAAC
ATGTTCAATCACGCGGTCTTCCACTGTGGCCTGCAGGTGCCCATTGTTTG
GAAGCACGCAATGAAGAAGCGCTGGAAATGCGAGCTTGGCTTCGACGCCT
CCGGCAGGCGCACAGCACAGATCCTGCTTCTGCACAGCATAGACACTGCG
GCCGAGCTTATCTATCTCCTGCTGCACGAGATGTGCCATGTGGCGGCTTT
CCTGTTCAACCGGGAGTTGGGTCACGGCGACAACTGCCGCAGATGGACCT
ACCAGGCGAAGATGGCCTTTCCGGAGGTGCCCGCCCTCATGGAGTGCATA
GCTAGCTTCATGTATACGTGCAGCATGTGCAGCCGTTCCTCCTACGGCTT
GGCCGACTTGAAATCGTACAACATACGCTGCTACTACTGCCAGTTCGAGG
TGAGCGTGAAGCCCGTTAGCAAGGCGAACATGCACGAGGGCGCCCGTTCC
GATCGGACGATGACACCGTTCAAGTGTTTCATCCGTGACAAGTATTTGAA
GCTGGGCGCGGAGGGGGGCGTCACACACTCCTCGAAGATGGCGCTACTCA
ACGAAATGTTCGCGAAGATGACAGCCGCCACGGAAGCAAGCTTTCTAGAC
CAT

BO10868.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:45:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG2694-RD 2469 CG2694-PD 443..2466 12..2035 10105 100 Plus
CG2694-RA 2478 CG2694-PA 452..2475 12..2035 10105 100 Plus
CG2694-RB 2022 CG2694-PB 1..2019 17..2035 10095 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:45:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG2694-RD 3066 CG2694-RD 494..2517 12..2035 10105 100 Plus
CG2694-RB 3152 CG2694-RB 580..2603 12..2035 10105 100 Plus
CG2694-RA 3075 CG2694-RA 503..2526 12..2035 10105 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:45:30
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2715514..2716706 504..1696 5965 100 Plus
X 23542271 X 2714885..2715280 12..407 1965 99.7 Plus
X 23542271 X 2716765..2717105 1695..2035 1705 100 Plus
2L 23513712 2L 6758086..6758870 2004..1223 1475 79.5 Minus
X 23542271 X 2715338..2715433 408..503 480 100 Plus
2L 23513712 2L 6759133..6759281 945..797 325 81.2 Minus
Blast to na_te.dros performed on 2014-11-28 00:45:31 has no hits.

BO10868.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:56:55 Download gff for BO10868.complete
Subject Subject Range Query Range Percent Splice Strand
CG2694-RA 445..2478 5..2036 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:36:28 Download gff for BO10868.complete
Subject Subject Range Query Range Percent Splice Strand
CG2694-RC 165..2183 17..2037 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:58:56 Download gff for BO10868.complete
Subject Subject Range Query Range Percent Splice Strand
CG2694-RA 508..2526 17..2037 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:56:55 Download gff for BO10868.complete
Subject Subject Range Query Range Percent Splice Strand
CG2694-RC 153..2188 5..2042 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:06 Download gff for BO10868.complete
Subject Subject Range Query Range Percent Splice Strand
CG2694-RA 508..2526 17..2037 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:06 Download gff for BO10868.complete
Subject Subject Range Query Range Percent Splice Strand
X 2714890..2715280 17..407 100 -> Plus
X 2715338..2715433 408..503 100 -> Plus
X 2715514..2716705 504..1695 100 -> Plus
X 2716766..2717105 1696..2037 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:58:56 Download gff for BO10868.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 2608923..2609313 17..407 100 -> Plus
arm_X 2609371..2609466 408..503 100 -> Plus
arm_X 2609547..2610738 504..1695 100 -> Plus
arm_X 2610799..2611138 1696..2037 99   Plus

BO10868.pep Sequence

Translation from 16 to 2053

> BO10868.pep
MSAKPSANSEDILLAGLLQDWKLEDHDNAQIGCDPAPMPASQSELALVHL
KLPCKTPQSQPQVEAHQNASVATVNSDSGSIILVSDDSSATACSFLHSSE
LCNSSDFEELRKEFTEDSSYIDLSLDSGSSNPSAIETDMKTHKLGAKRRS
PQTKGDVLAKKISYQNLNEMNISSNQPVVTRSGRVVVSRPNQQFDYSSSS
QSKGDGEEDSDEVSLDADDDEYEGEDFDQLKWTERKRRSFRNTSLAFSPD
GSRSSPEATPPMVYVELGGKIVIIRDKPQPNIVLEDDKELKTQMHKFLGL
IPSRRKLFDPSEYNMDRGDIEMDVYVPTSLVTNPSPRSSPSPVTPSARSR
IWQETTPTSICSNLNLSHTYTPTVNELQTKHMDDSIIQVNLDCFQKKTPD
SVKEPIDLSELPSQKQLATNCRRHKSCVARLERHPHFYGFVQSLRPSVSL
NMCHPLALTFRRTNFQQSKVALAKVLFNMFNHAVFHCGLQVPIVWKHAMK
KRWKCELGFDASGRRTAQILLLHSIDTAAELIYLLLHEMCHVAAFLFNRE
LGHGDNCRRWTYQAKMAFPEVPALMECIASFMYTCSMCSRSSYGLADLKS
YNIRCYYCQFEVSVKPVSKANMHEGARSDRTMTPFKCFIRDKYLKLGAEG
GVTHSSKMALLNEMFAKMTAATEASFLDH

BO10868.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:18:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG2694-PD 822 CG2694-PD 150..822 1..673 3529 100 Plus
CG2694-PB 673 CG2694-PB 1..673 1..673 3529 100 Plus
CG2694-PA 825 CG2694-PA 153..825 1..673 3529 100 Plus
CG11322-PB 480 CG11322-PB 1..480 139..673 1415 56.1 Plus
CG14814-PD 1030 CG14814-PD 769..1018 439..675 225 28.4 Plus