Clone Sequence Records
BO10868.3prime Sequence
919 bp (841 high quality bases) assembled on 2006-04-19
> BO10868.3prime
ATGGTCTAGAAAGCTTGCTTCCGTGGCGGCTGTCATCTTCGCGAACATTT
CGTTGAGTAGCGCCATCTTCGAGGAGTGTGTGACGCCCCCCTCCGCGCCC
AGCTTCAAATACTTGTCACGGATGAAACACTTGAACGGTGTCATCGTCCG
ATCGGAACGGGCGCCCTCGTGCATGTTCGCCTTGCTAACGGGCTTCACGC
TCACCTCGAACTGGCAGTAGTAGCAGCGTATGTTGTACGATTTCAAGTCG
GCCAAGCCGTAGGAGGAACGGCTGCACATGCTGCACGTATACATGAAGCT
AGCTATGCACTCCATGAGGGCGGGCACCTCCGGAAAGGCCATCTTCGCCT
GGTAGGTCCATCTGCGGCAGTTGTCGCCGTGACCCAACTCCCGGTTGAAC
AGGAAAGCCGCCACATGGCACATCTCGTGCAGCAGGAGATAGATAAGCTC
GGCCGCAGTGTCTATGCTGTGCAGAAGCAGGATCTGTGCTGTGCGCCTGC
CGGAGGCGTCGAAGCCAAGCTCGCATTTCCAGCGCTTCTTCATTGCGTGC
TTCCAAACAATGGGCACCTGCAGGCCACAGTGGAAGACCGCGTGATTGAA
CATGTTGAACAGAACCTTGGCCAGTGCCACCTTAGATTGCTGGAAATTGG
TCCGCCGGAAGGTGAGGGCCAGCGGATGGCACATGTTGAGCGAGACTGAC
GGTCTGAGCGACTGGACGAAACCGTAGAAATGTGGGTGCCGCTCCAGGCG
GGCTACACAGCTCTTGTGGCGGCGGCAGTTGGTGGCTAGTTGCTTTTGGC
TGGGAAGCTCGCTTAGATCAATGGGCTCCTTGACAGAGTCTGGTGTTTTC
TTCTGAAAGCAGTCCAAATTCACCTGGATTATAGAGTCATCCATGTGCTT
AGTCTGGAGCTCATTCACG
BO10868.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:12:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2694-PA | 2478 | CG2694-RA | 1575..2475 | 919..19 | 4505 | 100 | Minus |
CG2694-PB | 2022 | CG2694-RB | 1119..2019 | 919..19 | 4505 | 100 | Minus |
CG2694-PC | 2022 | CG2694-RC | 1119..2019 | 919..19 | 4505 | 100 | Minus |
CG11322-PA | 1479 | CG11322-RA | 859..951 | 633..541 | 315 | 93.5 | Minus |
CG11322-PA | 1479 | CG11322-RA | 1056..1155 | 436..337 | 300 | 92 | Minus |
CG11322-PA | 1479 | CG11322-RA | 1270..1302 | 225..193 | 165 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:26:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2694-RD | 3066 | CG2694-RD | 1617..2517 | 919..19 | 4505 | 100 | Minus |
CG2694-RB | 3152 | CG2694-RB | 1703..2603 | 919..19 | 4505 | 100 | Minus |
CG2694-RA | 3075 | CG2694-RA | 1626..2526 | 919..19 | 4505 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:26:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2716145..2716706 | 919..358 | 2810 | 100 | Minus |
X | 23542271 | X | 2716765..2717105 | 359..19 | 1705 | 100 | Minus |
2L | 23513712 | 2L | 6758086..6758870 | 50..831 | 1475 | 79.5 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:26:03 has no hits.
BO10868.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:51:42 Download gff for
BO10868.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2694-PC | 1119..2022 | 18..919 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:09:37 Download gff for
BO10868.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2694-PC | 1119..2022 | 18..919 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 21:55:47 Download gff for
BO10868.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2694-RA | 1626..2531 | 12..919 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:40:00 Download gff for
BO10868.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2694-RA | 1626..2531 | 12..919 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:40:00 Download gff for
BO10868.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2716145..2716705 | 359..919 | 100 | -> | Minus |
X | 2716766..2717110 | 12..358 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 21:55:47 Download gff for
BO10868.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2610178..2610738 | 359..919 | 100 | -> | Minus |
arm_X | 2610799..2611143 | 12..358 | 99 | | Minus |
BO10868.5prime Sequence
870 bp (842 high quality bases) assembled on 2006-04-19
> BO10868.5prime
GAAGTTATCAGTCGACATGTCCGCGAAGCCAAGTGCCAATTCGGAGGACA
TCCTTCTGGCCGGCCTGCTCCAGGACTGGAAACTAGAGGACCATGACAAC
GCACAGATTGGCTGCGACCCAGCGCCCATGCCGGCCAGTCAATCCGAATT
GGCACTGGTTCATTTGAAGTTGCCGTGCAAGACGCCCCAATCCCAGCCCC
AGGTGGAAGCCCATCAAAATGCTTCAGTTGCGACCGTCAACAGCGACAGC
GGAAGCATAATACTAGTGTCCGATGATTCCTCAGCTACGGCGTGCAGCTT
CCTTCACTCGTCCGAGCTCTGTAACTCCTCCGACTTCGAAGAACTGCGCA
AGGAGTTCACCGAGGACTCCTCATACATCGATCTCTCACTTGATTCGGGC
AGCAGCAATCCTAGTGCCATTGAAACCGACATGAAGACACACAAACTGGG
CGCGAAGCGCAGATCGCCGCAGACCAAGGGCGATGTGTTGGCCAAAAAGA
TTTCTTACCAGAATCTGAACGAGATGAACATCTCCTCGAATCAACCCGTG
GTGACGCGCAGTGGTCGTGTTGTGGTCTCACGTCCGAACCAGCAGTTTGA
CTACTCCTCCTCCTCCCAGTCGAAGGGCGATGGCGAGGAGGACTCCGACG
AGGTGTCACTGGATGCCGACGACGATGAGTATGAGGGAGAAGATTTCGAT
CAGCTCAAGTGGACGGAGCGCAAACGGCGTAGCTTTAGAAACACCAGCTT
AGCCTTCAGCCCCGATGGCAGCCGCTCGTCGCCGGAGGCAACACCTCCGA
TGGTCTATGTCGAATTGGGCGGCAAAATCGTGATCATTAGGGATAAACCA
CAGCCCAATATCGTTCTGGA
BO10868.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:12:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2694-PA | 2478 | CG2694-RA | 457..1310 | 17..870 | 4270 | 100 | Plus |
CG2694-PB | 2022 | CG2694-RB | 1..854 | 17..870 | 4270 | 100 | Plus |
CG2694-PC | 2022 | CG2694-RC | 1..854 | 17..870 | 4270 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:42:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2694-RD | 3066 | CG2694-RD | 494..1352 | 12..870 | 4280 | 99.9 | Plus |
CG2694-RB | 3152 | CG2694-RB | 580..1438 | 12..870 | 4280 | 99.9 | Plus |
CG2694-RA | 3075 | CG2694-RA | 503..1361 | 12..870 | 4280 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:42:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2714885..2715280 | 12..407 | 1965 | 99.7 | Plus |
X | 23542271 | X | 2715514..2715880 | 504..870 | 1835 | 100 | Plus |
X | 23542271 | X | 2715338..2715433 | 408..503 | 480 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 06:42:56 has no hits.
BO10868.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:51:43 Download gff for
BO10868.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2694-PC | 1..853 | 17..869 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:09:37 Download gff for
BO10868.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2694-PC | 1..853 | 17..869 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 13:41:10 Download gff for
BO10868.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2694-RA | 496..1360 | 5..869 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:17:35 Download gff for
BO10868.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2694-RA | 496..1360 | 5..869 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:17:35 Download gff for
BO10868.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2714878..2715280 | 5..407 | 99 | -> | Plus |
X | 2715338..2715433 | 408..503 | 100 | -> | Plus |
X | 2715514..2715879 | 504..869 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 13:41:10 Download gff for
BO10868.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2608911..2609313 | 5..407 | 99 | -> | Plus |
arm_X | 2609371..2609466 | 408..503 | 100 | -> | Plus |
arm_X | 2609547..2609912 | 504..869 | 100 | | Plus |
BO10868.complete Sequence
2053 bp assembled on 2008-01-16
GenBank Submission: FJ631905
> BO10868.complete
GAAGTTATCAGTCGACATGTCCGCGAAGCCAAGTGCCAATTCGGAGGACA
TCCTTCTGGCCGGCCTGCTCCAGGACTGGAAACTAGAGGACCATGACAAC
GCACAGATTGGCTGCGACCCAGCGCCCATGCCGGCCAGTCAATCCGAATT
GGCACTGGTTCATTTGAAGTTGCCGTGCAAGACGCCCCAATCCCAGCCCC
AGGTGGAAGCCCATCAAAATGCTTCAGTTGCGACCGTCAACAGCGACAGC
GGAAGCATAATACTAGTGTCCGATGATTCCTCAGCTACGGCGTGCAGCTT
CCTTCACTCGTCCGAGCTCTGTAACTCCTCCGACTTCGAAGAACTGCGCA
AGGAGTTCACCGAGGACTCCTCATACATCGATCTCTCACTTGATTCGGGC
AGCAGCAATCCTAGTGCCATTGAAACCGACATGAAGACACACAAACTGGG
CGCGAAGCGCAGATCGCCGCAGACCAAGGGCGATGTGTTGGCCAAAAAGA
TTTCTTACCAGAATCTGAACGAGATGAACATCTCCTCGAATCAACCCGTG
GTGACGCGCAGTGGTCGTGTTGTGGTCTCACGTCCGAACCAGCAGTTTGA
CTACTCCTCCTCCTCCCAGTCGAAGGGCGATGGCGAGGAGGACTCCGACG
AGGTGTCACTGGATGCCGACGACGATGAGTATGAGGGAGAAGATTTCGAT
CAGCTCAAGTGGACGGAGCGCAAACGGCGTAGCTTTAGAAACACCAGCTT
AGCCTTCAGCCCCGATGGCAGCCGCTCGTCGCCGGAGGCAACACCTCCGA
TGGTCTATGTCGAATTGGGCGGCAAAATCGTGATCATTAGGGATAAACCA
CAGCCCAATATCGTTCTGGAAGACGATAAGGAACTCAAGACGCAGATGCA
CAAGTTTTTGGGTCTGATTCCATCACGTCGCAAGCTCTTCGATCCGTCGG
AATACAATATGGATCGGGGGGATATTGAGATGGATGTGTACGTACCGACC
AGTCTTGTTACCAATCCATCACCTAGGTCCTCACCAAGCCCAGTTACTCC
ATCGGCCAGGTCACGAATATGGCAGGAAACAACGCCGACATCCATTTGCT
CCAACTTGAATTTATCGCATACCTACACACCGACCGTGAATGAGCTCCAG
ACTAAGCACATGGATGACTCTATAATCCAGGTGAATTTGGACTGCTTTCA
GAAGAAAACACCAGACTCTGTCAAGGAGCCCATTGATCTAAGCGAGCTTC
CCAGCCAAAAGCAACTAGCCACCAACTGCCGCCGCCACAAGAGCTGTGTA
GCCCGCCTGGAGCGGCACCCACATTTCTACGGTTTCGTCCAGTCGCTCAG
ACCGTCAGTCTCGCTCAACATGTGCCATCCGCTGGCCCTCACCTTCCGGC
GGACCAATTTCCAGCAATCTAAGGTGGCACTGGCCAAGGTTCTGTTCAAC
ATGTTCAATCACGCGGTCTTCCACTGTGGCCTGCAGGTGCCCATTGTTTG
GAAGCACGCAATGAAGAAGCGCTGGAAATGCGAGCTTGGCTTCGACGCCT
CCGGCAGGCGCACAGCACAGATCCTGCTTCTGCACAGCATAGACACTGCG
GCCGAGCTTATCTATCTCCTGCTGCACGAGATGTGCCATGTGGCGGCTTT
CCTGTTCAACCGGGAGTTGGGTCACGGCGACAACTGCCGCAGATGGACCT
ACCAGGCGAAGATGGCCTTTCCGGAGGTGCCCGCCCTCATGGAGTGCATA
GCTAGCTTCATGTATACGTGCAGCATGTGCAGCCGTTCCTCCTACGGCTT
GGCCGACTTGAAATCGTACAACATACGCTGCTACTACTGCCAGTTCGAGG
TGAGCGTGAAGCCCGTTAGCAAGGCGAACATGCACGAGGGCGCCCGTTCC
GATCGGACGATGACACCGTTCAAGTGTTTCATCCGTGACAAGTATTTGAA
GCTGGGCGCGGAGGGGGGCGTCACACACTCCTCGAAGATGGCGCTACTCA
ACGAAATGTTCGCGAAGATGACAGCCGCCACGGAAGCAAGCTTTCTAGAC
CAT
BO10868.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:45:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2694-RD | 2469 | CG2694-PD | 443..2466 | 12..2035 | 10105 | 100 | Plus |
CG2694-RA | 2478 | CG2694-PA | 452..2475 | 12..2035 | 10105 | 100 | Plus |
CG2694-RB | 2022 | CG2694-PB | 1..2019 | 17..2035 | 10095 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:45:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2694-RD | 3066 | CG2694-RD | 494..2517 | 12..2035 | 10105 | 100 | Plus |
CG2694-RB | 3152 | CG2694-RB | 580..2603 | 12..2035 | 10105 | 100 | Plus |
CG2694-RA | 3075 | CG2694-RA | 503..2526 | 12..2035 | 10105 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:45:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2715514..2716706 | 504..1696 | 5965 | 100 | Plus |
X | 23542271 | X | 2714885..2715280 | 12..407 | 1965 | 99.7 | Plus |
X | 23542271 | X | 2716765..2717105 | 1695..2035 | 1705 | 100 | Plus |
2L | 23513712 | 2L | 6758086..6758870 | 2004..1223 | 1475 | 79.5 | Minus |
X | 23542271 | X | 2715338..2715433 | 408..503 | 480 | 100 | Plus |
2L | 23513712 | 2L | 6759133..6759281 | 945..797 | 325 | 81.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:45:31 has no hits.
BO10868.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:56:55 Download gff for
BO10868.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2694-RA | 445..2478 | 5..2036 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:36:28 Download gff for
BO10868.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2694-RC | 165..2183 | 17..2037 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:58:56 Download gff for
BO10868.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2694-RA | 508..2526 | 17..2037 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:56:55 Download gff for
BO10868.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2694-RC | 153..2188 | 5..2042 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:06 Download gff for
BO10868.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2694-RA | 508..2526 | 17..2037 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:06 Download gff for
BO10868.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2714890..2715280 | 17..407 | 100 | -> | Plus |
X | 2715338..2715433 | 408..503 | 100 | -> | Plus |
X | 2715514..2716705 | 504..1695 | 100 | -> | Plus |
X | 2716766..2717105 | 1696..2037 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:58:56 Download gff for
BO10868.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2608923..2609313 | 17..407 | 100 | -> | Plus |
arm_X | 2609371..2609466 | 408..503 | 100 | -> | Plus |
arm_X | 2609547..2610738 | 504..1695 | 100 | -> | Plus |
arm_X | 2610799..2611138 | 1696..2037 | 99 | | Plus |
BO10868.pep Sequence
Translation from 16 to 2053
> BO10868.pep
MSAKPSANSEDILLAGLLQDWKLEDHDNAQIGCDPAPMPASQSELALVHL
KLPCKTPQSQPQVEAHQNASVATVNSDSGSIILVSDDSSATACSFLHSSE
LCNSSDFEELRKEFTEDSSYIDLSLDSGSSNPSAIETDMKTHKLGAKRRS
PQTKGDVLAKKISYQNLNEMNISSNQPVVTRSGRVVVSRPNQQFDYSSSS
QSKGDGEEDSDEVSLDADDDEYEGEDFDQLKWTERKRRSFRNTSLAFSPD
GSRSSPEATPPMVYVELGGKIVIIRDKPQPNIVLEDDKELKTQMHKFLGL
IPSRRKLFDPSEYNMDRGDIEMDVYVPTSLVTNPSPRSSPSPVTPSARSR
IWQETTPTSICSNLNLSHTYTPTVNELQTKHMDDSIIQVNLDCFQKKTPD
SVKEPIDLSELPSQKQLATNCRRHKSCVARLERHPHFYGFVQSLRPSVSL
NMCHPLALTFRRTNFQQSKVALAKVLFNMFNHAVFHCGLQVPIVWKHAMK
KRWKCELGFDASGRRTAQILLLHSIDTAAELIYLLLHEMCHVAAFLFNRE
LGHGDNCRRWTYQAKMAFPEVPALMECIASFMYTCSMCSRSSYGLADLKS
YNIRCYYCQFEVSVKPVSKANMHEGARSDRTMTPFKCFIRDKYLKLGAEG
GVTHSSKMALLNEMFAKMTAATEASFLDH
BO10868.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:18:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2694-PD | 822 | CG2694-PD | 150..822 | 1..673 | 3529 | 100 | Plus |
CG2694-PB | 673 | CG2694-PB | 1..673 | 1..673 | 3529 | 100 | Plus |
CG2694-PA | 825 | CG2694-PA | 153..825 | 1..673 | 3529 | 100 | Plus |
CG11322-PB | 480 | CG11322-PB | 1..480 | 139..673 | 1415 | 56.1 | Plus |
CG14814-PD | 1030 | CG14814-PD | 769..1018 | 439..675 | 225 | 28.4 | Plus |