Clone BO10870 Report

Search the DGRC for BO10870

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:108
Well:70
Vector:pDNR-Dual
Associated Gene/TranscriptCG16940-RA
Protein status:BO10870.pep: validated full length
Sequenced Size:3130

Clone Sequence Records

BO10870.3prime Sequence

924 bp (823 high quality bases) assembled on 2006-04-19

> BO10870.3prime
ATGGTCTAGAAAGCTTGCAATTTGTTCTTCCATCTTTAAAAATCCAGTTA
GTTTTTGGTCCCAAATGATCAGACATATGGGGACCACGGAAAGCAGCTGC
AACTTCCTAGGTGACTGCTTTAAGTTGCGCTCGGCAATAAGAATGTAATT
GGGTACGCCGTGTGTGTCTACGAGGACCTTTTGCATTTTGTAGTTAATGC
TTATAACGTGGCCCGACTCCAGAGTAACTACGTTCATCATATGCTGAAAT
ATTTCAATGACCACAGCTCGCATGTATATGCCCTGCTTGTTGTGAACATA
TCGTTTGAAGTACAAGTTACCAGAGTCCTCTCCGGCCTTTTTCGCATTGT
ACTTGCGCTCATTCGCTAATTTCGTTAAGGTGTGCAAATCATCTGGGGTA
CGTTTAGGCGGTGTACAATATTTAAGTGCGGCCGCCAAAAGTCGGTGCAC
CAAAATATCAGGATACCGACGGATTGGGCTAGTAAAGTGAGTGTATATGG
GTATGGACAAGGCGTAGTGCCACAGGTCAGCCGGTTCCGATTTACCCTCG
CTACAAAAATATGTTGCACGGGCCATTGGTTTCATCAAAAGCTGACTTAG
GCAGGCATTCATTGCGACAGGATTGGGCGCCTCATTGCACAACCGCACCA
TGCTCTCCTGGAGCGCCTTAGACGAGCTATAGTCCAATTCGAATCCCAGA
GCAAGCAGCTTTTCCCTTAAAGCCTTAAGGGACTTAATAAGTGGCGGAGG
GTGGTTACGCAGTACAGCGATATCCGGAAAGGAGTCGTGTATAAAGCGGG
CGACTGCCTGGTTGGCCAGGAGCATAAACTCTTCAATCAGCCGGTTAGCC
TCTCGCTGTTTCTCCACTTCAAAAGACAACGGCTCGCCAGTAATTGGATC
GAGCAGGAAGCGTAGCTTGGCATT

BO10870.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:12:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG16940-PB 3099 CG16940-RB 2191..3096 924..19 4530 100 Minus
CG16940-PC 3135 CG16940-RC 2227..3132 924..19 4530 100 Minus
CG16940-PA 3099 CG16940-RA 2191..3096 924..19 4530 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:30:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG16940-RA 3605 CG16940-RA 2327..3232 924..19 4530 100 Minus
CG16940-RC 3546 CG16940-RC 2268..3173 924..19 4530 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:30:50
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 215682..216106 443..19 2125 100 Minus
3L 28110227 3L 215090..215451 924..563 1810 100 Minus
3L 28110227 3L 215505..215624 562..443 600 100 Minus
Blast to na_te.dros performed on 2015-02-12 13:30:56 has no hits.

BO10870.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:51:46 Download gff for BO10870.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16940-PB 2191..3099 18..924 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:09:42 Download gff for BO10870.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16940-PA 2191..3099 18..924 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:34:50 Download gff for BO10870.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16940-RC 2268..3173 19..924 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:35:13 Download gff for BO10870.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16940-RC 2268..3173 19..924 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 17:35:13 Download gff for BO10870.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 215090..215451 563..924 100 -> Minus
3L 215505..215624 443..562 100 -> Minus
3L 215683..216106 19..442 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:34:50 Download gff for BO10870.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 215090..215451 563..924 100 -> Minus
arm_3L 215505..215624 443..562 100 -> Minus
arm_3L 215683..216106 19..442 100   Minus

BO10870.5prime Sequence

912 bp (804 high quality bases) assembled on 2006-04-19

> BO10870.5prime
GAAGTTATCAGTCGACATGTCGGAAACGTCAAGCGTCAACGTGGATGCGG
ACCGAGATTGCAGAAGGATTGAGGGCCTCCGACAGCGCTCACAACGCCTT
GCTGCCCGCCTCCAGCAGATGCAGAGGGAAATGGAGTCTAATGCATCCAG
CAAAGACCTATCGGCCAACAATGCCGTTATTCCGCTGCAGCCACTAATGC
GCTGGGCGGAACCACGGCCACATCCCAACCAATCCCAACCATCTGCTCGG
AGCAACAGCAGGCAGGCCATTCCTTACGGTGTGCCAGTATCCACGCCAGC
GCCGGTAGCTATGCAATTGCCCTACCACGTAGCATTCGCCTCCTACCAGG
CGACCATGCAGATTCCCTGCCTTCAGCCACTTTCGCATTTGCACGTCGTG
TCTAGTCCCAGCCATCGGTTAATAGCGAAAAAGAAGTCGAAGCGGGCTCT
TCGAAATGAGGTGGAAGCTCTTCAGGATATGGTCAAACATCTTTCACACC
TCTCCCCAGATGTTAACGCGTATGCCTGCCAGCTGATACGTAAAAACGAG
ATCCTTTCTCAGCTCGAGTGGAGTCAGACCAGGTCAGAAGCACATCCGCA
ACAGGTTGGTTACCAGGGGCGGCATCGCCACGATTCTGAGGTCTCTGCTA
CAAACAATGGAAGTCATGTACAGCAGCAACCGAAACTAGGACGAAGGCAA
CGCAATAGCAAGAAAAACGATGGATCCGGTAGCAATGGGACCCAATCGCA
AAAAACCGAACTAGAGGCCATGCGGTCGTACATAAACAAGATTGTCCAAC
GTCACGTGGGTATGGATCACCAGTTGTCGGAAGACTTGATTTTCAAAGGG
TACTTCTCCGACCTGGAAGCGCATGCGCAGAGACTAGTTGCGGCGGGTTA
TGGGCGCATTGT

BO10870.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:12:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG16940-PB 3099 CG16940-RB 1..896 17..912 4430 99.7 Plus
CG16940-PC 3135 CG16940-RC 37..932 17..912 4430 99.7 Plus
CG16940-PA 3099 CG16940-RA 1..896 17..912 4430 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:29:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG16940-RA 3605 CG16940-RA 137..1032 17..912 4450 99.8 Plus
CG16940-RC 3546 CG16940-RC 78..973 17..912 4450 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:29:53
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 212845..213740 17..912 4450 99.8 Plus
Blast to na_te.dros performed on 2015-02-12 01:29:55 has no hits.

BO10870.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:51:47 Download gff for BO10870.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16940-PB 1..896 17..912 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:09:44 Download gff for BO10870.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16940-PA 1..896 17..912 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:20:50 Download gff for BO10870.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16940-RC 74..973 10..912 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:52:59 Download gff for BO10870.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16940-RC 74..973 10..912 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:52:59 Download gff for BO10870.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 212843..213740 14..912 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:20:50 Download gff for BO10870.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 212843..213740 14..912 99   Plus

BO10870.complete Sequence

3130 bp (3130 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ631906

> BO10870.complete
GAAGTTATCAGTCGACATGTCGGAAACGTCAAGCGTCAACGTGGATGCGG
ACCGAGATTGCAGAAGGATTGAGGGCCTCCGACAGCGCTCACAACGCCTT
GCTGCCCGCCTCCAGCAGATGCAGAGGGAAATGGAGTCTAATGCATCCAG
CAAAGACCTATCGGCCAACAATGCCGTTATTCCGCTGCAGCCACTAATGC
GCTGGGCGGAACCACGGCCACATCCCAACCAATCCCAACCATCTGCTCGG
AGCAACAGCAGGCAGGCCATTCCTTACGGTGTGCCAGTATCCACGCCAGC
GCCGGTAGCTATGCAATTGCCCTACCACGTAGCATTCGCCTCCTACCAGG
CGACCATGCAGATTCCCTGCCTTCAGCCACTTTCGCATTTGCACGTCGTG
TCTAGTCCCAGCCATCGGTTAATAGCGAAAAAGAAGTCGAAGCGGGCTCT
TCGAAATGAGGTGGAAGCTCTTCAGGATATGGTCAAACATCTTTCACACC
TCTCCCCAGATGTTAACGCGTATGCCTGCCAGCTGATACGTAAAAACGAG
ATCCTTTCTCAGCTCGAGTGGAGTCAGACCAGGTCAGAAGCACATCCGCA
ACAGGTTGGTTACCAGGGGCGGCATCGCCACGATTCTGAGGTCTCTGCTA
CAAACAATGGAAGTCATGTACAGCAGCAACCGAAACTAGGACGAAGGCAA
CGCAATAGCAAGAAAAACGATGGATCCGGTAGCAATGGGACCCAATCGCA
AAAAACCGAACTAGAGGCCATGCGGTCGTACATAAACAAGATTGTCCAAC
GTCACGTGGGTATGGATCACCAGTTGTCGGAAGACTTGATTTTCAAAGGT
AACTTCTCCGACCTGGAAGCGCATGCGCAGAGACTAGTTGCGGCGGGTTA
TGGGCGCATTGTAGAAGAGGAAATCCGGGTTAACCGCAAGAACAACAGAC
AGGCCTTTATAATCATGTCCACTGATCGAGAAGCACTCGAACGAGATGGC
ATCGTGCTCTTGCCAGTGGCTAGGCGCTATGCCTTCGATGGTGACAAAGT
ACGTGCATTCGTGCTAAACCCTGGTGCTCAGGGTAGTTCAAAGACAGCTG
AGCCCTCGTCTGGTGAAATCTCTGGTGGGAAGCCCTCATTATCTCTTGCG
GATGGTGAGGAGCTTTCGGACGATACCGAGTCCCAGGGCTCTGAGTCCGA
TACCGACAACGTGGTCGTGATATCGTCGGACAACTGCCCTAAAGCGTTCG
TCATAGCAATAACTAAACGAACTGAGCTCCGCCAGATCGTGGGAACCATA
TCGTTTACGAACCCAACCAAACTCTGTGACGACCAGCTATTCTACAAATT
CCGACCGTACGATTTGCGTGTCCCCATGGTCTACGTTCCGAAGGATGCCT
GTGCCGCCCACATCGGAAACAAGCAGCAAATAGACGTGTCCGGCCTCTTA
TACCTTGCCCATATACTCGAGACAGATTGCAATGGGCACTGCATCGCTGA
ACTAATCCAGCCGGTTGGCCGCGTGGGTAATTTGGATGACGAACTTAAGG
CAATTCTGTTTCATAACGGTCTCCGGGATATAAAGCCATTTGAGCAACGA
TTTATCGACATTTACTCCCAGCCGCCACCTCCGATAAGCCAAGAGGATCT
GCGTCAACGAAAAGACTTAAGAAAGATGTGCATATTTACTATAGATCCGA
TGACTGCTCGCGATTTGGATGACGCCGTTTCTATAGAGAAGCTAGGCGAC
AACGAATATGAGATTGGCGTCCATATATCCGATGTTTCGCACTTCCTGAT
AGAGGACAATGAACTGGATAACATAGTGAAGGAACGCTCTACGTCTATTT
ATTTAGCCAACGAGGTAATCCACATGCTGCCTCAGTCTCTATGCATGCGA
TGTTCCCTGCTCCCTGGGCAAGACAAGTTTGCTTTTTCCGTCTTCTGGCG
GATGAACGGGAAGGGAGTCATGCTGCAAAAGAAGCCAGAATTTTGCCGCA
CAGTCATTAACTCTTGCTCGCAATTTGCTTATGAACACGCTCAAAAGATC
ATCGACAACCCTAATGAACGGTTTACCGAGAACGACTTTCCGACCATCCT
GAATGGATTTAATCCCGATGATATCAGAAATAGGGTGCTATGGCTGCACG
ACATTGCAAGCTCCATCCGTAAGACACGTTTAGACAATGGCGCACTCACA
ATTAACAATGCCAAGCTACGCTTCCTGCTCGATCCAATTACTGGCGAGCC
GTTGTCTTTTGAAGTGGAGAAACAGCGAGAGGCTAACCGGCTGATTGAAG
AGTTTATGCTCCTGGCCAACCAGGCAGTCGCCCGCTTTATACACGACTCC
TTTCCGGATATCGCTGTACTGCGTAACCACCCTCCGCCACTTATTAAGTC
CCTTAAGGCTTTAAGGGAAAAGCTGCTTGCTCTGGGATTCGAATTGGACT
ATAGCTCGTCTAAGGCGCTCCAGGAGAGCATGGTGCGGTTGTGCAATGAG
GCGCCCAATCCTGTCGCAATGAATGCCTGCCTAAGTCAGCTTTTGATGAA
ACCAATGGCCCGTGCAACATATTTTTGTAGCGAGGGTAAATCGGAACCGG
CTGACCTGTGGCACTACGCCTTGTCCATACCCATATACACTCACTTTACT
AGCCCAATCCGTCGGTATCCTGATATTTTGGTGCACCGACTTTTGGCGGC
CGCACTTAAATATTGTACACCGCCTAAACGTACCCCAGATGATTTGCACA
CCTTAACGAAATTAGCGAATGAGCGCAAGTACAATGCGAAAAAGGCCGGA
GAGGACTCTGGTAACTTGTACTTCAAACGATATGTTCACAACAAGCAGGG
CATATACATGCGAGCTGTGGTCATTGAAATATTTCAGCATATGATGAACG
TAGTTACTCTGGAGTCGGGCCACGTTATAAGCATTAACTACAAAATGCAA
AAGGTCCTCGTAGACACACACGGCGTACCCAATTACATTCTTATTGCCGA
GCGCAACTTAAAGCAGTCACCTAGGAAGTTGCAGCTGCTTTCCGTGGTCC
CCATATGTCTGATCATTTGGGACCAAAAACTAACTGGATTTTTAAAGATG
GAAGAACAAATTGCAAGCTTTCTAGACCAT

BO10870.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:57:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG16940-RA 3099 CG16940-PA 1..3096 17..3112 15480 100 Plus
CG16940-RC 3135 CG16940-PC 37..3132 17..3112 15480 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:57:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG16940-RA 3605 CG16940-RA 137..3232 17..3112 15480 100 Plus
CG16940-RC 3546 CG16940-RC 78..3173 17..3112 15480 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:57:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 214031..215451 1148..2568 7105 100 Plus
3L 28110227 3L 212845..213976 17..1148 5660 100 Plus
3L 28110227 3L 215682..216106 2688..3112 2125 100 Plus
3L 28110227 3L 215505..215624 2569..2688 600 100 Plus
Blast to na_te.dros performed on 2014-11-27 23:57:53 has no hits.

BO10870.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:56:23 Download gff for BO10870.complete
Subject Subject Range Query Range Percent Splice Strand
CG16940-RA 1..3099 17..3113 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:13:28 Download gff for BO10870.complete
Subject Subject Range Query Range Percent Splice Strand
CG16940-RA 107..3204 14..3112 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:42:30 Download gff for BO10870.complete
Subject Subject Range Query Range Percent Splice Strand
CG16940-RC 78..3173 17..3114 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:56:23 Download gff for BO10870.complete
Subject Subject Range Query Range Percent Splice Strand
CG16940-RA 107..3204 14..3112 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:11:48 Download gff for BO10870.complete
Subject Subject Range Query Range Percent Splice Strand
CG16940-RC 78..3173 17..3114 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:11:48 Download gff for BO10870.complete
Subject Subject Range Query Range Percent Splice Strand
3L 212845..213976 17..1148 100 -> Plus
3L 214032..215451 1149..2568 100 -> Plus
3L 215505..215624 2569..2688 100 -> Plus
3L 215683..216106 2689..3114 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:42:30 Download gff for BO10870.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 212845..213976 17..1148 100 -> Plus
arm_3L 214032..215451 1149..2568 100 -> Plus
arm_3L 215505..215624 2569..2688 100 -> Plus
arm_3L 215683..216106 2689..3114 99   Plus

BO10870.pep Sequence

Translation from 16 to 3130

> BO10870.pep
MSETSSVNVDADRDCRRIEGLRQRSQRLAARLQQMQREMESNASSKDLSA
NNAVIPLQPLMRWAEPRPHPNQSQPSARSNSRQAIPYGVPVSTPAPVAMQ
LPYHVAFASYQATMQIPCLQPLSHLHVVSSPSHRLIAKKKSKRALRNEVE
ALQDMVKHLSHLSPDVNAYACQLIRKNEILSQLEWSQTRSEAHPQQVGYQ
GRHRHDSEVSATNNGSHVQQQPKLGRRQRNSKKNDGSGSNGTQSQKTELE
AMRSYINKIVQRHVGMDHQLSEDLIFKGNFSDLEAHAQRLVAAGYGRIVE
EEIRVNRKNNRQAFIIMSTDREALERDGIVLLPVARRYAFDGDKVRAFVL
NPGAQGSSKTAEPSSGEISGGKPSLSLADGEELSDDTESQGSESDTDNVV
VISSDNCPKAFVIAITKRTELRQIVGTISFTNPTKLCDDQLFYKFRPYDL
RVPMVYVPKDACAAHIGNKQQIDVSGLLYLAHILETDCNGHCIAELIQPV
GRVGNLDDELKAILFHNGLRDIKPFEQRFIDIYSQPPPPISQEDLRQRKD
LRKMCIFTIDPMTARDLDDAVSIEKLGDNEYEIGVHISDVSHFLIEDNEL
DNIVKERSTSIYLANEVIHMLPQSLCMRCSLLPGQDKFAFSVFWRMNGKG
VMLQKKPEFCRTVINSCSQFAYEHAQKIIDNPNERFTENDFPTILNGFNP
DDIRNRVLWLHDIASSIRKTRLDNGALTINNAKLRFLLDPITGEPLSFEV
EKQREANRLIEEFMLLANQAVARFIHDSFPDIAVLRNHPPPLIKSLKALR
EKLLALGFELDYSSSKALQESMVRLCNEAPNPVAMNACLSQLLMKPMARA
TYFCSEGKSEPADLWHYALSIPIYTHFTSPIRRYPDILVHRLLAAALKYC
TPPKRTPDDLHTLTKLANERKYNAKKAGEDSGNLYFKRYVHNKQGIYMRA
VVIEIFQHMMNVVTLESGHVISINYKMQKVLVDTHGVPNYILIAERNLKQ
SPRKLQLLSVVPICLIIWDQKLTGFLKMEEQIASFLDH

BO10870.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:52:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG16940-PA 1032 CG16940-PA 1..1032 1..1032 5348 100 Plus
CG16940-PC 1044 CG16940-PC 13..1044 1..1032 5348 100 Plus
Dis3-PB 982 CG6413-PB 258..804 310..897 660 31.6 Plus
Dis3-PA 982 CG6413-PA 258..804 310..897 660 31.6 Plus