Clone Sequence Records
BO10875.3prime Sequence
938 bp (822 high quality bases) assembled on 2006-04-19
> BO10875.3prime
ATGGTCTAGAAAGCTTGCACAGAATCCCGGATTTGTGTGTTCGATGATGC
AGCGCTTGCAGTACTTCTTGACCGCCCGGTAGCCCTCGATGGAAACCGGA
CAGTCCTGGATATTCAGTTGCTGGAGACCGCGACAATAATATGCGATACA
CTGCACCCCGCGGTCCGTGATCATGTCGCAGCTGCGCAGGCTGAGCTTCT
TCAGGTTCGGACAGCTCTCGGCCAGAGCTCGAAGCCCCGCGTCGCTCACA
TCGCACTTCCCGATGTCCAAGGCTCGCAGACGTGGACAGGATCTCGCCAG
GACCGTAATGGAGTCATCGCTCACGGCCTCACATCCTCGAGCGTTCAGAT
AGCGCAGCTTATAGCACCGCCTGGCAATCACCTTTAGCCCCGCATCCGAG
ACCCGCTCGCATTTGGCCACGGAAAGGTAGCGCAGTGCGGCTCCCAGCTT
GGCCAACTCATACAATCCGAAATCTGTGATGTTCAGGCAGTCGGACACAC
TGAGCTCCTTCAGCGAGACGCAAAAACTGGGCACAAACTTCAGACCCGCA
TCTGTGACTTGTATGCAGCGGCGCAGATAAAGGTAAACCAGCTGGGGGCA
GTTCTTGACCACGATCTTCAGACCCATGTCATCGATGGCCATGCAGTCCG
TGAGGTCCAGATATTGAAGCAGCAGGCGACGCGGTGGCTCCATGTGGGGA
TTAGGACTGATGCTGCTCACCTGGCTGCAGCCCGTCACATCCAGATGCTG
CAGGTTGCTGCACTTGGTCAGCGCCTCGACCAGCGCCTGATTGGTGATAT
CCACGCANGTCTGTAGCTGAAGGTGGGTCAACTCGGGGCAGCGGCGCGTG
AGGAGCTGAAGGCCCTTGTCCGAGATGCNGCAGCCATCGGCGAGCATGAC
GCGCTCCACTTCCGGACAAGCGCCATTGCAGCTCTGGC
BO10875.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:12:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4221-PA | 2319 | CG4221-RA | 1397..2316 | 938..19 | 4562 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 17:31:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4221-RA | 3176 | CG4221-RA | 1870..2789 | 938..19 | 4578 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 17:30:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15931966..15932500 | 553..19 | 2675 | 100 | Minus |
| 3R | 32079331 | 3R | 15931429..15931636 | 938..731 | 1018 | 99 | Minus |
| 3R | 32079331 | 3R | 15931715..15931895 | 732..552 | 905 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 17:30:58 has no hits.
BO10875.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:51:56 Download gff for
BO10875.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4221-PA | 1397..2319 | 16..938 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:09:55 Download gff for
BO10875.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4221-PA | 1397..2319 | 16..938 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:32:54 Download gff for
BO10875.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4221-RA | 1870..2789 | 19..938 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:32:24 Download gff for
BO10875.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4221-RA | 1870..2789 | 19..938 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:32:24 Download gff for
BO10875.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15931429..15931635 | 732..938 | 99 | -> | Minus |
| 3R | 15931716..15931895 | 552..731 | 100 | -> | Minus |
| 3R | 15931968..15932500 | 19..551 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:32:54 Download gff for
BO10875.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11757438..11757617 | 552..731 | 100 | -> | Minus |
| arm_3R | 11757151..11757357 | 732..938 | 99 | -> | Minus |
| arm_3R | 11757690..11758222 | 19..551 | 100 | | Minus |
BO10875.5prime Sequence
928 bp (766 high quality bases) assembled on 2006-04-19
> BO10875.5prime
GAAGTTATCAGTCGACATGTCGCACAAGACTAGCAACCGTCGCAGCAGCG
ACCTGGAGTGTCCACTTGCTTCATTGGGCCGCAACAGCAATGCGGTACGC
GACCACTACCACCACCCGCATCCGCTGAGCTCCAGTCCACTGGATCCACA
GGCCTACAAAATGATGTCCCGCAAGTCACCCAATCCCGGCCTGGAGGTGG
CCGAAGCGCTGGCCTCGCGCAGCTCCACGCCGCCCAGCGACCAGGCTGGG
GCATCCTCGACGGCGGCGGCGGCAGCAGTGCTCCATATGGTGCAGCAAAA
AGCGGCGACCTTTGAGTTGAGAGGCCGCCACTCGCGACCAACCGAGCAGC
AGACCAGCTATGGAGCCCATTCCACGGCTTCGGTGGGTAGGCATGCGAAG
AAGTCCCCAGAACTACCAGCTCCAGCGTCGAGGAACGTGGCTCCCGTACC
ACAGCCGCGGAACTTCCTAACACTAGAACATGTCCTGCAATTTGGAACCC
AGCGACCCAGTTGGATGCACGGCAACAGTGCGGACACGGAGGATTCGAGT
GACAACAACGCGGGTGGCGGTGGAGCTGGAAGTGGCAGTGGTGGAGCTGG
AGGACGGAGACGTGCCCAAGGTGGCCGCTGCAGTGTGCCCACTGTACTCA
GCAGCAATGGCAGCGGCGGCAATGGAGCCCAGTACCTGCTGGACAAGAAA
ATGGAGTCACTGTATCTGGGTAACGCCCTGAGAACCCTTCCCTTAGGCGC
CGAAGCGAGTCAGTTCCAAAACGAACGCTACTACCTGGAGGATTACAGCA
GCGGCAGCGGGAACGAGCGACTGCCAGAACGCCTGCATCATCCGCGCACC
TCCCAGTCCAGCGAAACAAGTGGATCGGATCGCTACCTCCTAACCGCAGC
TCCCACTCCACCACCTGCACTCCAAGGC
BO10875.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:12:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4221-PA | 2319 | CG4221-RA | 1..837 | 17..853 | 4185 | 100 | Plus |
| CG4221-PA | 2319 | CG4221-RA | 842..877 | 858..893 | 180 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:52:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4221-RA | 3176 | CG4221-RA | 473..1386 | 16..927 | 4460 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:52:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15929975..15930786 | 16..827 | 4060 | 100 | Plus |
| 3R | 32079331 | 3R | 15930840..15930945 | 824..927 | 355 | 93.4 | Plus |
Blast to na_te.dros performed on 2015-02-11 14:52:45 has no hits.
BO10875.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:51:57 Download gff for
BO10875.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4221-PA | 1..913 | 17..928 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:09:57 Download gff for
BO10875.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4221-PA | 1..913 | 17..928 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:02:14 Download gff for
BO10875.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4221-RA | 469..1386 | 9..928 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:10:20 Download gff for
BO10875.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4221-RA | 469..1386 | 9..928 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:10:20 Download gff for
BO10875.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15929971..15930786 | 9..827 | 99 | -> | Plus |
| 3R | 15930844..15930945 | 828..928 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:02:14 Download gff for
BO10875.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11755693..11756508 | 9..827 | 99 | -> | Plus |
| arm_3R | 11756566..11756667 | 828..928 | 94 | | Plus |
BO10875.complete Sequence
2350 bp (2350 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631908
> BO10875.complete
GAAGTTATCAGTCGACATGTCGCACAAGACTAGCAACCGTCGCAGCAGCG
ACCTGGAGTGTCCACTTGCTTCATTGGGCCGCAACAGCAATGCGGTACGC
GACCACTACCACCACCCGCATCCGCTGAGCTCCAGTCCACTGGATCCACA
GGCCTACAAAATGATGTCCCGCAAGTCACCCAATCCCGGCCTGGAGGTGG
CCGAAGCGCTGGCCTCGCGCAGCTCCACGCCGCCCAGCGACCAGGCTGGG
GCATCCTCGACGGCGGCGGCGGCAGCAGTGCTCCATATGGTGCAGCAAAA
AGCGGCGACCTTTGAGTTGAGAGGCCGCCACTCGCGACCAACCGAGCAGC
AGACCAGCTATGGAGCCCATTCCACGGCTTCGGTGGGTAGGCATGCGAAG
AAGTCCCCAGAACTACCAGCTCCAGCGTCGAGGAACGTGGCTCCCGTACC
ACAGCCGCGGAACTTCCTAACACTAGAACATGTCCTGCAATTTGGAACCC
AGCGACCCAGTTGGATGCACGGCAACAGTGCGGACACGGAGGATTCGAGT
GACAACAACGCGGGTGGCGGTGGAGCTGGAAGTGGCAGTGGTGGAGCTGG
AGGACGGAGACGTGCCCAAGGTGGCCGCTGCAGTGTGCCCACTGTACTCA
GCAGCAATGGCAGCGGCGGCAATGGAGCCCAGTACCTGCTGGACAAGAAA
ATGGAGTCACTGTATCTGGGTAACGCCCTGAGAACCCTTCCCTTAGGCGC
CGAAGCGAGTCAGTTCCAAAACGAACGCTACTACCTGGAGGATTACAGCA
GCGGCAGCGGGAACGAGCGACTGCCAGAACGCCTGCATCATCCGCGCACC
TCCAGTCCCAGCGAAACAAGTGGATCGGATCGCTACCTCCTAAACCGCAG
CTCCAACTCCAACCACCTGCACTCCAAGGGCCAGAGCCTCTCGGACGGGC
TGTGCAACCTGGGACGCTTCTCGCCCAGCTTGGATCAAGGCTACGCCACA
CTGGTCTCACCCTCTCCCACGGGTCACCATTCAAGTGGCGGAGCGGGCAA
TGTGACCAATTCTACCACAGCCAGTGGAGCGGGAATCATGGCAAGCAGTA
CGCCAACTACAACGCCGCGAAGAGGAGCCTCTAGCAATGGATTGGGAGGA
GGAGCAGCGTCCGCCATTGGACCGCCGCCCTGGAACCGCAAAGGTCCCTT
CCGCTGCGGTCCGCTCTTTGATCGTCTGCCCGACGAGGCCGTTGTACGGA
TCTTCTCATGGCTGGACAGCTGCGAGTTGTGCAACGTGGCGCGAGTCTGC
CGGAGATTCGAGCACCTCGCCTGGCGGCCCATCCTGTGGAAGGTGATCTC
GCTGCGGGGCGAGCACTTGAATGGCGACAAGACGCTGAAGATGATCTTCC
GCCAGCTTTGCGGCCAGAGCTGCAATGGCGCTTGTCCGGAAGTGGAGCGC
GTCATGCTCGCCGATGGCTGCCGCATCTCGGACAAGGGCCTTCAGCTCCT
CACGCGCCGCTGCCCCGAGTTGACCCACCTTCAGCTACAGACCTGCGTGG
ATATCACCAATCAGGCGCTGGTCGAGGCGCTGACCAAGTGCAGCAACCTG
CAGCATCTGGATGTGACGGGCTGCAGCCAGGTGAGCAGCATCAGTCCTAA
TCCCCACATGGAGCCACCGCGTCGCCTGCTGCTTCAATATCTGGACCTCA
CGGACTGCATGGCCATCGATGACATGGGTCTGAAGATCGTGGTCAAGAAC
TGCCCCCAGCTGGTTTACCTTTATCTGCGCCGCTGCATACAAGTCACAGA
TGCGGGTCTGAAGTTTGTGCCCAGTTTTTGCGTCTCGCTGAAGGAGCTCA
GTGTGTCCGACTGCCTGAACATCACAGATTTCGGATTGTATGAGTTGGCC
AAGCTGGGAGCCGCACTGCGCTACCTTTCCGTGGCCAAATGCGAGCGGGT
CTCGGATGCGGGGCTAAAGGTGATTGCCAGGCGGTGCTATAAGCTGCGCT
ATCTGAACGCTCGAGGATGTGAGGCCGTGAGCGATGACTCCATTACGGTC
CTGGCGAGATCCTGTCCACGTCTGCGAGCCTTGGACATCGGGAAGTGCGA
TGTGAGCGACGCGGGGCTTCGAGCTCTGGCCGAGAGCTGTCCGAACCTGA
AGAAGCTCAGCCTGCGCAGCTGCGACATGATCACGGACCGCGGGGTGCAG
TGTATCGCATATTATTGTCGCGGTCTCCAGCAACTGAATATCCAGGACTG
TCCGGTTTCCATCGAGGGCTACCGGGCGGTCAAGAAGTACTGCAAGCGCT
GCATCATCGAACACACAAATCCGGGATTCTGTGCAAGCTTTCTAGACCAT
BO10875.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:24:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4221-RA | 2319 | CG4221-PA | 1..2316 | 17..2332 | 11580 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:24:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4221-RA | 3176 | CG4221-RA | 473..2789 | 16..2332 | 11585 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:24:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15929975..15930786 | 16..827 | 4060 | 100 | Plus |
| 3R | 32079331 | 3R | 15930840..15931636 | 824..1620 | 3985 | 100 | Plus |
| 3R | 32079331 | 3R | 15931966..15932500 | 1798..2332 | 2675 | 100 | Plus |
| 3R | 32079331 | 3R | 15931715..15931895 | 1619..1799 | 905 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:24:22 has no hits.
BO10875.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:56:24 Download gff for
BO10875.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4221-RA | 1..2319 | 17..2335 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:13:30 Download gff for
BO10875.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4221-RA | 454..2774 | 9..2332 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:50:26 Download gff for
BO10875.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4221-RA | 474..2789 | 17..2334 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:56:25 Download gff for
BO10875.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4221-RA | 454..2774 | 9..2332 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:17:44 Download gff for
BO10875.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4221-RA | 474..2789 | 17..2334 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:17:44 Download gff for
BO10875.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15929976..15930786 | 17..827 | 100 | -> | Plus |
| 3R | 15930844..15931635 | 828..1619 | 100 | -> | Plus |
| 3R | 15931716..15931895 | 1620..1799 | 100 | -> | Plus |
| 3R | 15931968..15932500 | 1800..2334 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:50:26 Download gff for
BO10875.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11755698..11756508 | 17..827 | 100 | -> | Plus |
| arm_3R | 11756566..11757357 | 828..1619 | 100 | -> | Plus |
| arm_3R | 11757438..11757617 | 1620..1799 | 100 | -> | Plus |
| arm_3R | 11757690..11758222 | 1800..2334 | 99 | | Plus |
BO10875.pep Sequence
Translation from 16 to 2350
> BO10875.pep
MSHKTSNRRSSDLECPLASLGRNSNAVRDHYHHPHPLSSSPLDPQAYKMM
SRKSPNPGLEVAEALASRSSTPPSDQAGASSTAAAAAVLHMVQQKAATFE
LRGRHSRPTEQQTSYGAHSTASVGRHAKKSPELPAPASRNVAPVPQPRNF
LTLEHVLQFGTQRPSWMHGNSADTEDSSDNNAGGGGAGSGSGGAGGRRRA
QGGRCSVPTVLSSNGSGGNGAQYLLDKKMESLYLGNALRTLPLGAEASQF
QNERYYLEDYSSGSGNERLPERLHHPRTSSPSETSGSDRYLLNRSSNSNH
LHSKGQSLSDGLCNLGRFSPSLDQGYATLVSPSPTGHHSSGGAGNVTNST
TASGAGIMASSTPTTTPRRGASSNGLGGGAASAIGPPPWNRKGPFRCGPL
FDRLPDEAVVRIFSWLDSCELCNVARVCRRFEHLAWRPILWKVISLRGEH
LNGDKTLKMIFRQLCGQSCNGACPEVERVMLADGCRISDKGLQLLTRRCP
ELTHLQLQTCVDITNQALVEALTKCSNLQHLDVTGCSQVSSISPNPHMEP
PRRLLLQYLDLTDCMAIDDMGLKIVVKNCPQLVYLYLRRCIQVTDAGLKF
VPSFCVSLKELSVSDCLNITDFGLYELAKLGAALRYLSVAKCERVSDAGL
KVIARRCYKLRYLNARGCEAVSDDSITVLARSCPRLRALDIGKCDVSDAG
LRALAESCPNLKKLSLRSCDMITDRGVQCIAYYCRGLQQLNIQDCPVSIE
GYRAVKKYCKRCIIEHTNPGFCASFLDH
BO10875.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:46:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4221-PA | 772 | CG4221-PA | 1..772 | 1..772 | 4080 | 100 | Plus |
| CG9003-PB | 651 | CG9003-PB | 14..604 | 169..745 | 443 | 26.9 | Plus |
| CG9003-PC | 426 | CG9003-PC | 14..379 | 400..745 | 402 | 28.7 | Plus |
| CG9003-PG | 437 | CG9003-PG | 25..390 | 400..745 | 402 | 28.7 | Plus |
| CG9003-PD | 437 | CG9003-PD | 25..390 | 400..745 | 402 | 28.7 | Plus |
