Clone BO10880 Report

Search the DGRC for BO10880

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:108
Well:80
Vector:pDNR-Dual
Associated Gene/TranscriptAlh-RB
Protein status:BO10880.pep:
Sequenced Size:2506

Clone Sequence Records

BO10880.3prime Sequence

861 bp (839 high quality bases) assembled on 2006-04-19

> BO10880.3prime
ATGGTCTAGAAAGCTTGCCTTACCATGCGCCTCGGCCTTGGTGTTGCTTG
CGATGGTACTCAGCGGGATCTGCAGGCGCGCATTGACCGCCAGCAGGTGA
TCACGTCGCGCTATCAGGCTGGTCACATGCTCCTCCAGCCGGAGGTTTTC
GCTCTGCAGCTGGTGCAAGCAATTAAGCAGCGAGGCAATGTCAAAGTGCT
GCGCTTGCTCCATGAGAAACTGCGAGCCCTGCTCCCACTGGCGCTCCAGC
AGCTGCTCCAGACTTTGCGGAATGGGCATGTTGCCGTTCATGCCGCCACC
GCTGAACATCGATTGCAGCGGATTTTGAGCTGGCGTGGCGTTGCTAGGAA
CGGCAGTGGAGTTACGCTGCTTGCCGGGGAACGGAACTCCGGCGTATTGC
GAGTTCATTGAATCGGGAGTGTAGATCGAGTGATCCTGGACCTCCATGTG
CAGCTGCTCGGACAGCTTCTGGGCCACGCTGCTGTTTGGGTTGATCTGGT
TGCCCAGCATATGCGCGGCCGTGTGTGTAATGATCGAACTGGCTGAGCTG
ACAGCATTAGACGAAGCGGGAGTAGCAGGAGGCGTTGGTGTGCTGCCAGC
TGGATTGCCCGGTGTATTGCTCGCCCCATTCTGGAGTATGCGCACATCCT
TGAGATCCTGTTGAGAATTGCTGAGAGCAGCTGCTGCTGCCGCTGCCGCC
GCTGCAGCAGCTATCGTCGCATCTTTGGCCTTGCGTCCACGCTTCCGTAC
ATTTCCAGGTTGAGCAGTCGCCGCTGTCGAAGCTCCAGTCAGGGAACCGG
GTGCAGTAGTTGCGGAGTGCATGGCCGATCCTATCTCTGAGCCGGGCGAA
CTGGGCGGGGA

BO10880.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:12:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG1070-PA 4131 Alh-RA 3286..4128 861..19 4215 100 Minus
CG1070-PD 3972 Alh-RD 3127..3969 861..19 4215 100 Minus
CG1070-PB 2475 Alh-RB 1630..2472 861..19 4215 100 Minus
CG1070-PC 2931 Alh-RC 1630..2467 861..24 4190 100 Minus
CG8246-PA 1278 Poxn-RA 441..467 712..686 135 100 Minus
CG32180-PA 2490 Eip74EF-RA 1921..1947 708..682 135 100 Minus
CG32180-PC 2607 Eip74EF-RC 2038..2064 708..682 135 100 Minus
CG32180-PB 2652 Eip74EF-RB 2083..2109 708..682 135 100 Minus
CG32180-PD 2652 Eip74EF-RD 2083..2109 708..682 135 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 16:32:23
Subject Length Description Subject Range Query Range Score Percent Strand
Alh-RP 6029 CG1070-RP 4556..5398 861..19 4215 100 Minus
Alh-RL 4850 CG1070-RL 3377..4219 861..19 4215 100 Minus
Alh-RK 5033 CG1070-RK 3560..4402 861..19 4215 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 16:32:16
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7098826..7099320 367..861 2475 100 Plus
3R 32079331 3R 7098555..7098735 189..369 905 100 Plus
3R 32079331 3R 7098314..7098483 19..188 850 100 Plus
Blast to na_te.dros performed on 2015-02-03 16:32:19 has no hits.

BO10880.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:52:03 Download gff for BO10880.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1070-PA 3287..4131 15..860 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:10:03 Download gff for BO10880.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1070-PB 1631..2475 15..860 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:27:55 Download gff for BO10880.3prime
Subject Subject Range Query Range Percent Splice Strand
Alh-RK 3561..4406 14..860 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 18:55:09 Download gff for BO10880.3prime
Subject Subject Range Query Range Percent Splice Strand
Alh-RK 3561..4406 14..860 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 18:55:09 Download gff for BO10880.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 7098310..7098483 14..188 98 <- Plus
3R 7098555..7098732 189..366 100 <- Plus
3R 7098826..7099319 367..860 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:27:55 Download gff for BO10880.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2924032..2924205 14..188 98 <- Plus
arm_3R 2924277..2924454 189..366 100 <- Plus
arm_3R 2924548..2925041 367..860 100   Plus

BO10880.5prime Sequence

912 bp (816 high quality bases) assembled on 2006-04-19

> BO10880.5prime
GAAGTTATCAGTCGACATGATGATGATGGACACCATGGACACCTCGCAAT
CGCAGCCGATGGACGTGGCTCCGGCCGTAGCAGTGGCAGCCACTTCGGGC
GCAGCTCTGGTGGACTTTACCGCTGCCATGGTGAGCATGGCGGCCACCGC
CGAGGCTGAGTCCGCCGAGAGCAACAACAACCACATCGACATGGCCGAGT
ACAAGGAGCACCGCAAGAACAAAAAAAAGAAACGCGAGAAGCGGGAGCGC
GAGGGCAAGGAGCACCGGCATCACAAACACCGTGACCGGGAGCATCGCGA
GCATCGACGACATCGCGACCGGGATCGGGACAAGGAGCGGGATCGGGAGG
GACATCACCACCATCCAACGCACCACCACCCCAACAACAGCCAGCACTCG
ACCTCCGCCTCGTCGTCGCCTTCGTCTGCCTCTACCACGCCCTCGGCGAC
CATCGAATACGTGGGCGGATCGGCTTCCGCCTCGCCCTCTTATCTGGGTG
GTGGAGCGACAGGGACGGGTGCAGCCGTAGGAGCCACCACCACATATCCG
CACAACTTAAAAATACGCTTCCTGCTTTCCGGGCAACGTACCGAACTCAG
CCCGCCGACCCACCAAACATCCGCAACCGCCGAAGTAAATGCACCGCTGG
CCAGCTCGACGAGTGCATCCATTGCGGTAACTGCGAGTGCGACGGCGGCA
TCAGCCCCTCCAGCAACGGGCACCACTACCTTAGGCAGCAGCATTAGCGG
CAATGCTGGCTCAACCTCCAGCGGTAACAGTTCCGGAGTATCGGCGACTG
GAGGAGCACAATCCGCCGTGGGGTCTGGCGGCTATCCAAAGACAGAATCG
AGCAAGTCGAGTGGCACCGCAAGCGCAGGCAGTGGCAGTGGCAGCAGCAG
CAATACAAGTAG

BO10880.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:12:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG1070-PB 2475 Alh-RB 1..896 17..912 4480 100 Plus
CG1070-PC 2931 Alh-RC 1..896 17..912 4480 100 Plus
CG1070-PA 4131 Alh-RA 2222..2552 582..912 1655 100 Plus
CG1070-PD 3972 Alh-RD 2063..2393 582..912 1655 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:52:51
Subject Length Description Subject Range Query Range Score Percent Strand
Alh-RO 5324 CG1070-RO 781..1676 17..912 4480 100 Plus
Alh-RN 5100 CG1070-RN 781..1676 17..912 4480 100 Plus
Alh-RM 5196 CG1070-RM 781..1676 17..912 4480 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:52:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7107078..7107644 583..17 2835 100 Minus
3R 32079331 3R 7101769..7102098 912..583 1650 100 Minus
Blast to na_te.dros performed on 2015-02-11 14:52:50 has no hits.

BO10880.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:52:04 Download gff for BO10880.5prime
Subject Subject Range Query Range Percent Splice Strand
Alh-PB 1..896 17..912 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:10:04 Download gff for BO10880.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1070-PC 1..896 17..912 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:02:19 Download gff for BO10880.5prime
Subject Subject Range Query Range Percent Splice Strand
Alh-RM 781..1676 17..912 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:10:23 Download gff for BO10880.5prime
Subject Subject Range Query Range Percent Splice Strand
Alh-RM 781..1676 17..912 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:10:23 Download gff for BO10880.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 7101769..7102097 584..912 100 <- Minus
3R 7107078..7107644 17..583 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:02:19 Download gff for BO10880.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2927491..2927819 584..912 100 <- Minus
arm_3R 2932800..2933366 17..583 100   Minus

BO10880.complete Sequence

2506 bp assembled on 2008-01-16

GenBank Submission: FJ631909

> BO10880.complete
GAAGTTATCAGTCGACATGATGATGATGGACACCATGGACACCTCGCAAT
CGCAGCCGATGGACGTGGCTCCGGCCGTAGCAGTGGCAGCCACTTCGGGC
GCAGCTCTGGTGGACTTTACCGCTGCCATGGTGAGCATGGCGGCCACCGC
CGAGGCTGAGTCCGCCGAGAGCAACAACAACCACATCGACATGGCCGAGT
ACAAGGAGCACCGCAAGAACAAAAAAAAGAAACGCGAGAAGCGGGAGCGC
GAGGGCAAGGAGCACCGGCATCACAAACACCGTGACCGGGAGCATCGCGA
GCATCGACGACATCGCGACCGGGATCGGGACAAGGAGCGGGATCGGGAGG
GACATCACCACCATCCAACGCACCACCACCCCAACAACAGCCAGCACTCG
ACCTCCGCCTCGTCGTCGCCTTCGTCTGCCTCTACCACGCCCTCGGCGAC
CATCGAATACGTGGGCGGATCGGCTTCCGCCTCGCCCTCTTATCTGGGTG
GTGGAGCGACAGGGACGGGTGCAGCCGTAGGAGCCACCACCACATATCCG
CACAACTTAAAAATACGCTTCCTGCTTTCCGGGCAACGTACCGAACTCAG
CCCGCCGACCCACCAAACATCCGCAACCGCCGAAGTAAATGCACCGCTGG
CCAGCTCGACGAGTGCATCCATTGCGGTAACTGCGAGTGCGACGGCGGCA
TCAGCCCCTCCAGCAACGGGCACCACTACCTTAGGCAGCAGCATTAGCGG
CAATGCTGGCTCAACCTCCAGCGGTAACAGTTCCGGAGTATCGGCGACTG
GAGGAGCACAATCCGCCGTGGGGTCTGGCGGCTATCCAAAGACAGAATCG
AGCAAGTCGAGTGGCACCGCAAGCGCAGGCAGTGGCAGTGGCAGCAGCAG
CAATACAAGTAGCACCAAGCACGGCAGCAACATCAAGGATATTAGCAGCA
GTAGCAATCAGCAGGCATCGACTGCGAGCAGCAGTAGTGCACCCAGCCTT
TATGTCTCCGTGCCACTGTCCACGGCCAACGTACCTGGAATCAATCTGCC
CACCAGCAGCACTAGCAGTAGTACCACCAGCGAATCCCATTCGGCATCGT
CGCGCAGCAGTGGTGCACAATCTCAGCATCAGCAGCAGCTAAGCAATGCT
TTGGTTGGTCCGCCCATGGGAGGATCCGCTGGGGCTTTTCATGGCGGAAC
AACCAGCGCTGGGTCCTCGTCGGTCATCCAGCAGCAGAGCGGCAAGTCAT
CGCCGGCTCTGGGCACGCTAGTCAGTGGCAACAGTGGTGGTAGCATAATC
TCCGCCAGTGGCTTTCCACTACCGAGTGGTAATCTCACTGCCACGACCAC
TGAGAGCGGCAACTTGAAGATCAGCTATGAGAAACAGACGACACGAGTGC
AACAATTGCAGGAGCAGGAGGCGCCACCGGCCAGACGCAGCAGAACGCTT
GATCTGAGCACGGCAAGCGCTTCATCGTCATCGCCATCTGCAGTGCCCGC
GACAACATCTCCCTTGGTCGTACTGAGTAACCAATTGCCACTTAACTCGG
TGGCAGCAAGTAGTTCCACCGGTGGTCTGAAGTTTACCTACGAGAGTCAG
ACCCAGATGGACGTGCCCATGATGCCTGTGAGCGCCATAAAGGATTCCCC
GCCCAGTTCGCCCGGCTCAGAGATAGGATCGGCCATGCACTCCGCAACTA
CTGCACCCGGTTCCCTGACTGGAGCTTCGACAGCGGCGACTGCTCAACCT
GGAAATGTACGGAAGCGTGGACGCAAGGCCAAAGATGCGACGATAGCTGC
TGCAGCGGCGGCAGCGGCAGCAGCAGCTGCTCTCAGCAATTCTCAACAGG
ATCTCAAGGATGTGCGCATACTCCAGAATGGGGCGAGCAATACACCGGGC
AATCCAGCTGGCAGCACACCAACGCCTCCTGCTACTCCCGCTTCGTCTAA
TGCTGTCAGCTCAGCCAGTTCGATCATTACACACACGGCCGCGCATATGC
TGGGCAACCAGATCAACCCAAACAGCAGCGTGGCCCAGAAGCTGTCCGAG
CAGCTGCACATGGAGGTCCAGGATCACTCGATCTACACTCCCGATTCAAT
GAACTCGCAATACGCCGGAGTTCCGTTCCCCGGCAAGCAGCGTAACTCCA
CTGCCGTTCCTAGCAACGCCACGCCAGCTCAAAATCCGCTGCAATCGATG
TTCAGCGGTGGCGGCATGAACGGCAACATGCCCATTCCGCAAAGTCTGGA
GCAGCTGCTGGAGCGCCAGTGGGAGCAGGGCTCGCAGTTTCTCATGGAGC
AAGCGCAGCACTTTGACATTGCCTCGCTGCTTAATTGCTTGCACCAGCTG
CAGAGCGAAAACCTCCGGCTGGAGGAGCATGTGACCAGCCTGATAGCGCG
ACGTGATCACCTGCTGGCGGTCAATGCGCGCCTGCAGATCCCGCTGAGTA
CCATCGCAAGCAACACCAAGGCCGAGGCGCATGGTAAGGCAAGCTTTCTA
GACCAT

BO10880.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:12:47
Subject Length Description Subject Range Query Range Score Percent Strand
Alh-RB 2475 CG1070-PB 1..2472 17..2488 12360 100 Plus
Alh-RO 3402 CG1070-PO 1..2467 17..2483 12335 100 Plus
Alh-RN 3159 CG1070-PN 1..2467 17..2483 12335 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:12:48
Subject Length Description Subject Range Query Range Score Percent Strand
Alh-RB 3883 CG1070-RB 781..3252 17..2488 12360 100 Plus
Alh-RO 5324 CG1070-RO 781..3247 17..2483 12335 100 Plus
Alh-RN 5100 CG1070-RN 781..3247 17..2483 12335 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:12:43
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7098826..7099525 2140..1441 3500 100 Minus
3R 32079331 3R 7107078..7107644 583..17 2835 100 Minus
3R 32079331 3R 7101599..7102098 1082..583 2500 100 Minus
3R 32079331 3R 7101137..7101498 1443..1082 1810 100 Minus
3R 32079331 3R 7098555..7098735 2318..2138 905 100 Minus
3R 32079331 3R 7098314..7098483 2488..2319 850 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:12:45 has no hits.

BO10880.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:56:57 Download gff for BO10880.complete
Subject Subject Range Query Range Percent Splice Strand
Alh-RB 1..2475 17..2492 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:32:45 Download gff for BO10880.complete
Subject Subject Range Query Range Percent Splice Strand
Alh-RB 774..3245 17..2490 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:47:38 Download gff for BO10880.complete
Subject Subject Range Query Range Percent Splice Strand
Alh-RB 781..3252 17..2490 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:56:57 Download gff for BO10880.complete
Subject Subject Range Query Range Percent Splice Strand
Alh-RB 774..3249 17..2493 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:16:21 Download gff for BO10880.complete
Subject Subject Range Query Range Percent Splice Strand
Alh-RB 781..3252 17..2490 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:16:21 Download gff for BO10880.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7101137..7101497 1083..1443 100 <- Minus
3R 7098312..7098483 2319..2490 98 <- Minus
3R 7098555..7098732 2141..2318 100 <- Minus
3R 7098826..7099522 1444..2140 100 <- Minus
3R 7101599..7102097 584..1082 100 <- Minus
3R 7107078..7107644 17..583 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:47:38 Download gff for BO10880.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2926859..2927219 1083..1443 100 <- Minus
arm_3R 2924034..2924205 2319..2490 98 <- Minus
arm_3R 2924277..2924454 2141..2318 100 <- Minus
arm_3R 2924548..2925244 1444..2140 100 <- Minus
arm_3R 2927321..2927819 584..1082 100 <- Minus
arm_3R 2932800..2933366 17..583 100   Minus

BO10880.pep Sequence

Translation from 16 to 2506

> BO10880.pep
MMMMDTMDTSQSQPMDVAPAVAVAATSGAALVDFTAAMVSMAATAEAESA
ESNNNHIDMAEYKEHRKNKKKKREKREREGKEHRHHKHRDREHREHRRHR
DRDRDKERDREGHHHHPTHHHPNNSQHSTSASSSPSSASTTPSATIEYVG
GSASASPSYLGGGATGTGAAVGATTTYPHNLKIRFLLSGQRTELSPPTHQ
TSATAEVNAPLASSTSASIAVTASATAASAPPATGTTTLGSSISGNAGST
SSGNSSGVSATGGAQSAVGSGGYPKTESSKSSGTASAGSGSGSSSNTSST
KHGSNIKDISSSSNQQASTASSSSAPSLYVSVPLSTANVPGINLPTSSTS
SSTTSESHSASSRSSGAQSQHQQQLSNALVGPPMGGSAGAFHGGTTSAGS
SSVIQQQSGKSSPALGTLVSGNSGGSIISASGFPLPSGNLTATTTESGNL
KISYEKQTTRVQQLQEQEAPPARRSRTLDLSTASASSSSPSAVPATTSPL
VVLSNQLPLNSVAASSSTGGLKFTYESQTQMDVPMMPVSAIKDSPPSSPG
SEIGSAMHSATTAPGSLTGASTAATAQPGNVRKRGRKAKDATIAAAAAAA
AAAAALSNSQQDLKDVRILQNGASNTPGNPAGSTPTPPATPASSNAVSSA
SSIITHTAAHMLGNQINPNSSVAQKLSEQLHMEVQDHSIYTPDSMNSQYA
GVPFPGKQRNSTAVPSNATPAQNPLQSMFSGGGMNGNMPIPQSLEQLLER
QWEQGSQFLMEQAQHFDIASLLNCLHQLQSENLRLEEHVTSLIARRDHLL
AVNARLQIPLSTIASNTKAEAHGKASFLDH

BO10880.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:18:33
Subject Length Description Subject Range Query Range Score Percent Strand
Alh-PB 824 CG1070-PB 1..824 1..824 4129 100 Plus
Alh-PM 1084 CG1070-PM 1..826 1..826 4120 99.6 Plus
Alh-PI 1134 CG1070-PI 1..826 1..826 4120 99.6 Plus
Alh-PH 1165 CG1070-PH 1..826 1..826 4120 99.6 Plus
Alh-PJ 1448 CG1070-PJ 1..826 1..826 4120 99.6 Plus
Alh-PM 1084 CG1070-PM 392..1075 120..738 180 23.7 Plus
Alh-PI 1134 CG1070-PI 392..1075 120..738 180 23.7 Plus
Alh-PH 1165 CG1070-PH 392..1075 120..738 180 23.7 Plus