Clone BO10882 Report

Search the DGRC for BO10882

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:108
Well:82
Vector:pDNR-Dual
Associated Gene/TranscriptCG9866-RA
Protein status:BO10882.pep: validated full length
Sequenced Size:2947

Clone Sequence Records

BO10882.3prime Sequence

909 bp (776 high quality bases) assembled on 2006-04-19

> BO10882.3prime
ATGGTCTAGAAAGCTTGCGACGAAGACGCGCATCAAGTCGCTGCTGGTTG
GAGTGGAGTTGCCTCCCGGATTGGAACTGTTCCCCTTCCAGGGAGGATTG
CTGTTGGCGCTGGGAGTGTTGCTGCTGTTCAAATTGCTGATGTTGTTCAT
GTTGCTGATGTTCATGTTGCTGCTGCTGTCGGACAAGGTGCGCAGCAGCT
GCTTTTTGAGGAGCTGCTGTGGCGAGTGGCTCTGACTTTGGCTGGCGTTG
TGGTTGCTCTGGAGCGGCAGGGTGAAGCTGGGGCGGCCGAGGGGCTGCAG
CTGCTCCAGCTTGCCGGCCAACAGTCGGCGGCGTTTCTCGTAGAAACTGA
AGGTCAGCTTGTTGTCCTCCTCCTTGTCGCGTTCCTTGTCCTTCGTCGGC
TGCTCGCCGCCATCCTCGCTATCCGGTGGTGGCTTCTCCTCCTTCTTCGC
CTTTCCCATTAGCAGTTCATTCAAACGCTTGGCTGTCATGACTCCCGGCG
ATCCGCTTGATCCACCACCAGCTTTTCCTCCTACCAGCGCCCTCTTATTG
CACCTCAGGCGATCTTGTGCAATGACATTCGATCGCTGAGCGTAAATGGT
TCTGCCCGAGGCGGGATTCTTACCCGGCAGACCGTTGCTTAACGCTGGCG
AGGGCGGCGGCGGTGTGCGGGCCAGCTGACCGACCACGCCCAGGTGATTA
CCTCCCGACAGGGATAGCAAATTGTTGTTCGCCTTCCGCGTGGTCAACAG
ATTCTTGCGGAAGGTGACGCCCAGGCCCTGGGGCAACTTCACCATGCCAA
ACGTGTTCATGGCCAAGGGACGAGGCGCTCCGGAGTACAGCATCACGTTA
AAGTAGCTGTCCTCGTGGTATTTGGCATTTGGCAGCGATGGATGGTGATT
GATTGAGGA

BO10882.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:12:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG9866-PA 2916 CG9866-RA 2028..2913 904..19 4380 99.7 Minus
CG9866-PB 2916 CG9866-RB 2028..2913 904..19 4380 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:39:13
Subject Length Description Subject Range Query Range Score Percent Strand
Atxn7-RD 3380 CG9866-RD 2395..3286 909..19 4405 99.7 Minus
Atxn7-RC 3655 CG9866-RC 2432..3323 909..19 4405 99.7 Minus
Atxn7-RB 3232 CG9866-RB 2247..3138 909..19 4405 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:39:06
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2379289..2380174 904..19 4400 99.8 Minus
Blast to na_te.dros performed on 2015-02-10 22:39:10 has no hits.

BO10882.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:52:04 Download gff for BO10882.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9866-PB 2023..2916 16..908 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:10:05 Download gff for BO10882.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9866-PB 2023..2916 16..908 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:49:18 Download gff for BO10882.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9866-RB 2248..3144 12..908 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:06:52 Download gff for BO10882.3prime
Subject Subject Range Query Range Percent Splice Strand
Atxn7-RB 2248..3144 12..908 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:06:52 Download gff for BO10882.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 2379284..2380180 12..908 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:49:18 Download gff for BO10882.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2379284..2380180 12..908 99   Minus

BO10882.5prime Sequence

932 bp (832 high quality bases) assembled on 2006-04-19

> BO10882.5prime
GAAGTTATCAGTCGACATGCCCCTGAACGATGTGGCCCCCGCCGGTGGTG
GAGCTTATCCGGAAAATGGAACCAAGCACAAGGTGTCGGGAATGTGGAAG
CCGGACTCGTCGGCCGGCTCCAATTCCGGCTCGGGATCGGCGGGACTATC
CCTGTTTAGCCTGCAGGGCCAAAAGTGGCAGCAGGTCTTCGACATGGAAA
AGGTCATCAAGCAACTGCGAACGGCTGAGAAGACGTATCTGCGTGGTGGA
AAGAACTCCTCCGCCGGCGCAGATCAACAGGCGAAGGTGCAGGTCCAGCG
TCTGCAATCGGCGGACATGGCCTACTACGATCTGGCGCCGAAGCTGGCCA
GTCGCGATATAGTACTCTGTAGTTCCTGCTCGGGATGTTACACGAAGGCA
GGTTTCCAGCACCACATTGCGCTGCAGCATCCTAGCGTCTGGGAGGCCAC
ATCCAGCAAAGTGAATCCCAATCCAAATGGGACAGCCATATCCAGCGACT
CTCGTCTCACTGCCACGGAAATCAGTCAGGAGGGCGGGGCTATCGTGCCA
AGTTCGCCCACGGATACGCTTTCGGCCTCGACGCTCTCCAGTTGCTCGAA
CGGGTCCAGCAGCTCGGCTTCACTGCAGCATCCGGCTGCTGCGGGTTCAT
CCAGCACCACGTCGTCTTCGTCTTCGTCGCGTCACAAGAGCAGCAGCAGT
AAAAGTAGCAGTTCCTCCTCGTCTAAGGGCAGCAGCAGCACTTCCGCCGG
AAGTAGGTCGCGTTCGAAGTCGTCAAAGAACCGCCACCACTCCTCGCCAG
CTCCGGCCCTGCTGGAGTCCAATCACAAGGAGTCAAGGGGATCGAAGAAG
AGTTCGGCCATAGCCGCTCCTCCCGTCGTCGCTGCTGTTGTTAAGGAGGA
GCCACCATCTGTGGGTGCTGCTCCGGCTGCCA

BO10882.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:12:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG9866-PA 2916 CG9866-RA 1..916 17..932 4555 99.8 Plus
CG9866-PB 2916 CG9866-RB 1..916 17..932 4555 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:20:15
Subject Length Description Subject Range Query Range Score Percent Strand
Atxn7-RD 3380 CG9866-RD 374..1289 17..932 4565 99.9 Plus
Atxn7-RC 3655 CG9866-RC 411..1326 17..932 4565 99.9 Plus
Atxn7-RB 3232 CG9866-RB 226..1141 17..932 4565 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:20:08
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2377202..2378117 17..932 4565 99.9 Plus
Blast to na_te.dros performed 2015-02-13 08:20:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6826..6882 684..740 123 68.4 Plus
roo 9092 roo DM_ROO 9092bp 1084..1148 930..866 109 63.1 Minus

BO10882.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:52:05 Download gff for BO10882.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9866-PB 1..915 17..931 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:10:07 Download gff for BO10882.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9866-PB 1..915 17..931 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:36:00 Download gff for BO10882.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9866-RB 218..1140 6..931 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:11:46 Download gff for BO10882.5prime
Subject Subject Range Query Range Percent Splice Strand
Atxn7-RB 218..1140 6..931 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:11:46 Download gff for BO10882.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 2377194..2378116 6..931 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:36:00 Download gff for BO10882.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2377194..2378116 6..931 99   Plus

BO10882.complete Sequence

2947 bp (2947 high quality bases) assembled on 2006-08-21

GenBank Submission: FJ631910

> BO10882.complete
GAAGTTATCAGTCGACATGCCCCTGAACGATGTGGCCCCCGCCGGTGGTG
GAGCTTATCCGGAAAATGGAACCAAGCACAAGGTGTCGGGAATGTGGAAG
CCGGACTCGTCGGCCGGCTCCAATTCCGGCTCGGGATCGGCGGGACTATC
CCTGTTTAGCCTGCAGGGCCAAAAGTGGCAGCAGGTCTTCGACATGGAAA
AGGTCATCAAGCAACTGCGAACGGCTGAGAAGACGTATCTGCGTGGTGGA
AAGAACTCCTCCGCCGGCGCAGATCAACAGGCGAAGGTGCAGGTCCAGCG
TCTGCAATCGGCGGACATGGCCTACTACGATCTGGCGCCGAAGCTGGCCA
GTCGCGATATAGTACTCTGTAGTTCCTGCTCGGGATGTTACACGAAGGCA
GGTTTCCAGCACCACATTGCGCTGCAGCATCCTAGCGTCTGGGAGGCCAC
ATCCAGCAAAGTGAATCCCAATCCAAATGGGACAGCCATATCCAGCGACT
CTCGTCTCACTGCCACGGAAATCAGTCAGGAGGGCGGGGCTATCGTGCCA
AGTTCGCCCACGGATACGCTTTCGGCCTCGACGCTCTCCAGTTGCTCGAA
CGGGTCCAGCAGCTCGGCTTCACTGCAGCATCCGGCTGCTGCGGGTTCAT
CCAGCACCACGTCGTCTTCGTCTTCGTCGCGTCACAAGAGCAGCAGCAGT
AAAAGTAGCAGTTCCTCCTCGTCTAAGGGCAGCAGCAGCACTTCCGCCGG
AAGTAGGTCGCGTTCGAAGTCGTCAAAGAACCGCCACCACTCCTCGCCAG
CTCCGGCCCTGCTGGAGTCCAATCACAAGGAGTCAAAGGGATCGAAGAAG
AGTTCGGCCATAGCCGCTCCTCCCGTCGTCGCTGCTGTTGTTAAGGAGGA
GCCACCATCTGTGGGTGCTGCTCCGGCTGCCATAACCATGTTCTCCTCCT
CCAGCAACTCATCCTGCAGCTTACCGCCCACTCCCACGTTGGGAGCGGCC
TCCAGCGAGGTGGCGATGGGGGTCAACTATTCACCTGCCCAGCTTCAGAC
GGATGCGGAAAAGCTGCCCGAGCTGCAGCCAAAGAAAAAGTTGAAGGGCT
CCAGCGATCATCGAATAAAAGCGGAAAAGGAGAAGAACAAAGATAAGTCT
CTGGTGAATTCCTACGAGCAGCAGCAAGTGCTCAGCGAACTGGACCAGGC
AGTGTCTTCCATCACGGGAGCGGTTTCCGCCGAGCAGGTGGCGCCCGATG
AGGAGGAACTGCCCTTGCCCAACACCTCCGACGAGAACTCCATTTCGCAG
ACGCTCGACGAAATGCTGGACAGCAAGCTGATCAACGAGATTCTGAATAA
CTTCGATGAGAGCGCTCTGGACACATCGCAACAGCAGTCACAACAGCAAG
CGCAGAATGGATCGCTATCGCATCCCGCACAGGCCACTAAAAGGCTGCGC
TTTGAGGACGGAACCATTGGCGAGGATTACGCCGTGTACCAGCAGCAGGC
GGTTCAGCAGGTTTATGGCGAGGAAGAGCATCAGCAGGAGCTGACCACCA
TCGATGCCATGCAGTTGCAGCAACTGATTTACCAGCAGCAGCAGATGCTC
GAGCAGCAGCAACTGCAAGAGCAGCAGCAACAGCAGCAGCAGGATCAGAA
GCTTCAGGATCACGAGCAGCAGCGCCAGTTCAGCGTCTACAACGTGCCGT
CTCTGACGGATGAGGCAATGGTCAATCCACAGCAACAGCAGCTGGAGGAG
CACATGATCCTGCCCAGTATTATATACGAGATCACCGAGTCGAATCCCGT
TTCCATGCTGGAGCAGAAGGTCTTAGCCGAATTCCTAACCAACGCGGGCT
ACGAAAATGTGGACGTGAATGTCGTGCAATCGGGCGGCATACAAACCAAC
TTGAGTTCTGGAACGGAGGCAAACCAACTGGCGGATGAACTGGCCGACTT
TGAGTTCAGTAAACTGGAGACTGTTAGCGACACCGTAAAGACTGTTAAGC
TGGAGGCCAAGGCCGCCAGCCAGCCACCCACAACAAATCCTCAAATCAAT
CACCATCCATCGCTGGCCAATGCCAAATACCACGAGGACAGCTACTTTAA
CGTGATGCTGTACTCCGGAGCGCCTCGTCCCTTGGCCATGAACACGTTTG
GCATGGTGAAGTTGCCCCAGGGCCTGGGCGTCACCTTCCGCAAGAATCTG
TTGACCACGCGGAAGGCGAACAACAATTTGCTATCCCTGTCGGGAGGTAA
TCACCTGGGCGTGGTCGGTCAGCTGGCCCGCACACCGCCGCCGCCCTCGC
CAGCGTTAAGCAACGGTCTGCCGGGTAAGAATCCCGCCTCGGGCAGAACC
ATTTACGCTCAGCGATCGAATGTCATTGCACAAGATCGCCTGAGGTGCAA
TAAGAGGGCGCTGGTAGGAGGAAAAGCTGGTGGTGGATCAAGCGGATCGC
CGGGAGTCATGACAGCCAAGCGTTTGAATGAACTGCTAATGGGAAAGGCG
AAGAAGGAGGAGAAGCCACCACCGGATAGCGAGGATGGCGGCGAGCAGCC
GACGAAGGACAAGGAACGCGACAAGGAGGAGGACAACAAGCTGACCTTCA
GTTTCTACGAGAAACGCCGCCGACTGTTGGCCGGCAAGCTGGAGCAGCTG
CAGCCCCTCGGCCGCCCCAGCTTCACCCTGCCGCTCCAGAGCAACCACAA
CGCCAGCCAAAGTCAGAGCCACTCGCCACAGCAGCTCCTCAAAAAGCAGC
TGCTGCGCACCTTGTCCGACAGCAGCAGCAACATGAACATCAGCAACATG
AACAACATCAGCAATTTGAACAGCAGCAACACTCCCAGCGCCAACAGCAA
TCCTCCCTGGAAGGGGAACAGTTCCAATCCGGGAGGCAACTCCACTCCAA
CCAGCAGCGACTTGATGCGCGTCTTCGTCGCAAGCTTTCTAGACCAT

BO10882.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:55:18
Subject Length Description Subject Range Query Range Score Percent Strand
Atxn7-RD 2916 CG9866-PD 1..2913 17..2929 14565 100 Plus
Atxn7-RC 2916 CG9866-PC 1..2913 17..2929 14565 100 Plus
Atxn7-RB 2916 CG9866-PB 1..2913 17..2929 14565 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:55:19
Subject Length Description Subject Range Query Range Score Percent Strand
Atxn7-RD 3380 CG9866-RD 374..3286 17..2929 14565 100 Plus
Atxn7-RC 3655 CG9866-RC 411..3323 17..2929 14565 100 Plus
Atxn7-RB 3232 CG9866-RB 226..3138 17..2929 14565 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:55:15
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2378334..2380174 1089..2929 9205 100 Plus
2L 23513712 2L 2377202..2378275 17..1090 5370 100 Plus
Blast to na_te.dros performed 2014-11-27 20:55:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6741..6908 1521..1693 276 65.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6724..6848 1567..1693 234 66.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6826..6882 684..740 123 68.4 Plus

BO10882.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:54:02 Download gff for BO10882.complete
Subject Subject Range Query Range Percent Splice Strand
CG9866-RB 1..2916 17..2932 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:10:16 Download gff for BO10882.complete
Subject Subject Range Query Range Percent Splice Strand
CG9866-RB 140..3066 6..2936 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:15:36 Download gff for BO10882.complete
Subject Subject Range Query Range Percent Splice Strand
CG9866-RB 226..3138 17..2931 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:54:02 Download gff for BO10882.complete
Subject Subject Range Query Range Percent Splice Strand
CG9866-RB 140..3066 6..2936 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:30:55 Download gff for BO10882.complete
Subject Subject Range Query Range Percent Splice Strand
Atxn7-RB 226..3138 17..2931 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:30:55 Download gff for BO10882.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2377202..2378275 17..1090 100 -> Plus
2L 2378336..2380174 1091..2931 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:15:36 Download gff for BO10882.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2377202..2378275 17..1090 100 -> Plus
arm_2L 2378336..2380174 1091..2931 99   Plus

BO10882.pep Sequence

Translation from 16 to 2947

> BO10882.pep
MPLNDVAPAGGGAYPENGTKHKVSGMWKPDSSAGSNSGSGSAGLSLFSLQ
GQKWQQVFDMEKVIKQLRTAEKTYLRGGKNSSAGADQQAKVQVQRLQSAD
MAYYDLAPKLASRDIVLCSSCSGCYTKAGFQHHIALQHPSVWEATSSKVN
PNPNGTAISSDSRLTATEISQEGGAIVPSSPTDTLSASTLSSCSNGSSSS
ASLQHPAAAGSSSTTSSSSSSRHKSSSSKSSSSSSSKGSSSTSAGSRSRS
KSSKNRHHSSPAPALLESNHKESKGSKKSSAIAAPPVVAAVVKEEPPSVG
AAPAAITMFSSSSNSSCSLPPTPTLGAASSEVAMGVNYSPAQLQTDAEKL
PELQPKKKLKGSSDHRIKAEKEKNKDKSLVNSYEQQQVLSELDQAVSSIT
GAVSAEQVAPDEEELPLPNTSDENSISQTLDEMLDSKLINEILNNFDESA
LDTSQQQSQQQAQNGSLSHPAQATKRLRFEDGTIGEDYAVYQQQAVQQVY
GEEEHQQELTTIDAMQLQQLIYQQQQMLEQQQLQEQQQQQQQDQKLQDHE
QQRQFSVYNVPSLTDEAMVNPQQQQLEEHMILPSIIYEITESNPVSMLEQ
KVLAEFLTNAGYENVDVNVVQSGGIQTNLSSGTEANQLADELADFEFSKL
ETVSDTVKTVKLEAKAASQPPTTNPQINHHPSLANAKYHEDSYFNVMLYS
GAPRPLAMNTFGMVKLPQGLGVTFRKNLLTTRKANNNLLSLSGGNHLGVV
GQLARTPPPPSPALSNGLPGKNPASGRTIYAQRSNVIAQDRLRCNKRALV
GGKAGGGSSGSPGVMTAKRLNELLMGKAKKEEKPPPDSEDGGEQPTKDKE
RDKEEDNKLTFSFYEKRRRLLAGKLEQLQPLGRPSFTLPLQSNHNASQSQ
SHSPQQLLKKQLLRTLSDSSSNMNISNMNNISNLNSSNTPSANSNPPWKG
NSSNPGGNSTPTSSDLMRVFVASFLDH

BO10882.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:50:30
Subject Length Description Subject Range Query Range Score Percent Strand
Atxn7-PD 971 CG9866-PD 1..971 1..971 4914 100 Plus
Atxn7-PC 971 CG9866-PC 1..971 1..971 4914 100 Plus
Atxn7-PB 971 CG9866-PB 1..971 1..971 4914 100 Plus
Atxn7-PA 971 CG9866-PA 1..971 1..971 4914 100 Plus
sr-PE 906 CG7847-PE 44..429 157..556 209 22.9 Plus