Clone Sequence Records
BO10887.3prime Sequence
920 bp (772 high quality bases) assembled on 2006-04-19
> BO10887.3prime
ATGGTCTAGAAAGCTTGCGGCTTGGCCCGACTCCTTAGCCACTTTATCCT
TTAAGCATTCAAGTGCCCTTGAGAAAATGGCTTCTTCCTTTCCGGCTTTG
AGTGCAGACACAAACAGTTGCACCTTTTCATCGCCAATCTCTTGGAGATC
CGAGTTTTCCGCTTTTATCACCATACATGCCAACAGGCGCAGCAACTTCA
AGGCGTTCTCCACATACTGCTCCTTTGGAGCGTCATCCTCCTCCTCTTCG
TCCTCTTCGAACTCATTGGCGTCGGGATCACTTCCCCCCGTGTAGTTGTC
AATGTGCTGTTTAAGTCTATACCACAATTCCAAAAGATTTAAGAAGGCCT
CCTTGTGATAGAAGTACTTCAGGCGACTCCAAATGTGCGCCAGATCCTCG
AGATACTCCTCCTGGCGTTCGCCTAATGGAATGAGTTGCAGAGGCTGCTG
CAAAAACTGCAGTATTCGCGCTAGACAACTGACTATACTGGGTGCATACA
CATCCATGGAGGCCTGCGCCTCTGGCAGTTGGACCAGAATGGTGCATATA
TTGAGGTAGGTTTGTATGATCTCCACATCACAGGTTATTTTTGGTCCGCA
CGAGTCGTAACCGACGTCGGCATCTTCATCACTGTCGTGGGCCGCTGGCA
CTTCTGCATCTTCGTTGTCCTCGCCAGCTTCCTCGTCGGTCAATTTTGTC
TGATCATCGCGCATGAGTCGCANAAACGCGCTATTGACCCCCTCGCAGAG
TTCTGGCACTAGAAAGACCTCCGCAAAAGGCTTTAGATTCAACGTGGAGT
TTGCGTTTTCCTCCTCCACCAAGGCGCAACTGGCCAGCACAGCATTTGTG
GCCTTCAGTGCAGCTACTAGCAGTTCATCGCTAACGGACAGTTGCAATAT
CCTGCCCAGGTTCTGCGCGG
BO10887.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:12:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30467-PA | 1566 | CG30467-RA | 662..1563 | 920..19 | 4491 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:13:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30467-RA | 1782 | CG30467-RA | 801..1702 | 920..19 | 4499 | 99.9 | Minus |
| CG8187-RA | 1698 | CG8187-RA | 1318..1674 | 19..375 | 1785 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:13:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15538975..15539519 | 920..376 | 2714 | 99.8 | Minus |
| 2R | 25286936 | 2R | 15539578..15539934 | 375..19 | 1785 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 13:13:42 has no hits.
BO10887.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:52:10 Download gff for
BO10887.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30467-PA | 662..1566 | 15..920 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:10:13 Download gff for
BO10887.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30467-PA | 662..1566 | 15..920 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:33:35 Download gff for
BO10887.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30467-RA | 801..1705 | 15..920 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:46:28 Download gff for
BO10887.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30467-RA | 801..1705 | 15..920 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:46:28 Download gff for
BO10887.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15538975..15539519 | 376..920 | 99 | -> | Minus |
| 2R | 15539578..15539937 | 15..375 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:33:35 Download gff for
BO10887.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11426480..11427024 | 376..920 | 99 | -> | Minus |
| arm_2R | 11427083..11427442 | 15..375 | 99 | | Minus |
BO10887.5prime Sequence
783 bp (782 high quality bases) assembled on 2006-04-19
> BO10887.5prime
GAAGTTATCAGTCGACATGCCCAAGGAAGAAGCGGAGCCATCGGCGAGTG
GTCTTGCGGTGGCCGCCAAGCAAAACGATGTGCCATCCGCGGAAAACTCG
AATCACAAGGAAAGCGACGCATACGCCTCCGCCTCTGCCAGCGCCAGTAG
CGCCTCGACCACGCCCCCACCCGCCCAGGAAGACGCCGAGGAGGCGGAGC
TGCTGGAGCGTATGCGCGGCGATGCAGTCGGCAACACCATGTACAGCAGT
CGATTCATCCTGAAAACGGTGATGAGGGTGGGAGAATTACTGCGGCATTC
AACACTGGATCAGCAGCTGGAGGATGACCTGTGCAAAGTGTGGGACATGT
CGGTGTCCCCCGAAGTGGTCACACTGCTGCTGGAGAACGGAGCCATTGAT
CCGATCATGTACACCCTGGTGGCGGGCTGTGAAGATGTGCGGCTCTACGA
GATTCTTATCGGACTGCTGGGCAATATGTGCGCCCAGGTGGAGTGCGCAG
AGATATTGGCCTGTGACCGCTACACGTTGGAAACCCTGTTCAAGATGACA
TACTGCATGGACACCGCCATGTTGATACAGCTGATGCGACTCTTTCAGTA
CATCATGGCCCATGTGCTTAGCGGCAAGGAGAAGTTCGCTGTGAACTGGT
ACATCTGCTTTGCTGCCTTTGAGAACTCCGCGCAGAACCTGGGCAGGATA
TTGCAACTGTCCGTTAGCGATGAACTGCTAGTAGCTGCACTGAAGGCCAC
AAATGCTGTGCTGGCCAGTTGCGCCTTGGTGGA
BO10887.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:12:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30467-PA | 1566 | CG30467-RA | 1..767 | 17..783 | 3835 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:44:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30467-RA | 1782 | CG30467-RA | 135..906 | 12..783 | 3845 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:44:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15538309..15539080 | 12..783 | 3845 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:44:48 has no hits.
BO10887.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:52:11 Download gff for
BO10887.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30467-PA | 1..766 | 17..782 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:10:15 Download gff for
BO10887.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30467-PA | 1..766 | 17..782 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:54:44 Download gff for
BO10887.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30467-RA | 131..905 | 9..782 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:00:38 Download gff for
BO10887.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30467-RA | 131..905 | 9..782 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:00:38 Download gff for
BO10887.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15538305..15539079 | 9..782 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:54:44 Download gff for
BO10887.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11425810..11426584 | 9..782 | 99 | | Plus |
BO10887.complete Sequence
1597 bp (1597 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631912
> BO10887.complete
GAAGTTATCAGTCGACATGCCCAAGGAAGAAGCGGAGCCATCGGCGAGTG
GTCTTGCGGTGGCCGCCAAGCAAAACGATGTGCCATCCGCGGAAAACTCG
AATCACAAGGAAAGCGACGCATACGCCTCCGCCTCTGCCAGCGCCAGTAG
CGCCTCGACCACGCCCCCACCCGCCCAGGAAGACGCCGAGGAGGCGGAGC
TGCTGGAGCGTATGCGCGGCGATGCAGTCGGCAACACCATGTACAGCAGT
CGATTCATCCTGAAAACGGTGATGAGGGTGGGAGAATTACTGCGGCATTC
AACACTGGATCAGCAGCTGGAGGATGACCTGTGCAAAGTGTGGGACATGT
CGGTGTCCCCCGAAGTGGTCACACTGCTGCTGGAGAACGGAGCCATTGAT
CCGATCATGTACACCCTGGTGGCGGGCTGTGAAGATGTGCGGCTCTACGA
GATTCTTATCGGACTGCTGGGCAATATGTGCGCCCAGGTGGAGTGCGCAG
AGATATTGGCCTGTGACCGCTACACGTTGGAAACCCTGTTCAAGATGACA
TACTGCATGGACACCGCCATGTTGATACAGCTGATGCGACTCTTTCAGTA
CATCATGGCCCATGTGCTTAGCGGCAAGGAGAAGTTCGCTGTGAACTGGT
ACATCTGCTTTGCTGCCTTTGAGAACTCCGCGCAGAACCTGGGCAGGATA
TTGCAACTGTCCGTTAGCGATGAACTGCTAGTAGCTGCACTGAAGGCCAC
AAATGCTGTGCTGGCCAGTTGCGCCTTGGTGGAGGAGGAAAACGCAAACT
CCACGTTGAATCTAAAGCCTTTTGCGGAGGTCTTTCTAGTGCCAGAACTC
TGCGAGGGGGTCAATAGCGCGTTTTTGCGACTCATGCGCGATGATCAGAC
AAAATTGACCGACGAGGAAGCTGGCGAGGACAACGAAGATGCAGAAGTGC
CAGCGGCCCACGACAGTGATGAAGATGCCGACGTCGGTTACGACTCGTGC
GGACCAAAAATAACCTGTGATGTGGAGATCATACAAACCTACCTCAATAT
ATGCACCATTCTGGTCCAACTGCCAGAGGCGCAGGCCTCCATGGATGTGT
ATGCACCCAGTATAGTCAGTTGTCTAGCGCGAATACTGCAGTTTTTGCAG
CAGCCTCTGCAACTCATTCCATTAGGCGAACGCCAGGAGGAGTATCTCGA
GGATCTGGCGCACATTTGGAGTCGCCTGAAGTACTTCTATCACAAGGAGG
CCTTCTTAAATCTTTTGGAATTGTGGTATAGACTTAAACAGCACATTGAC
AACTACACGGGGGGAAGTGATCCCGACGCCAATGAGTTCGAAGAGGACGA
AGAGGAGGAGGATGACGCTCCAAAGGAGCAGTATGTGGAGAACGCCTTGA
AGTTGCTGCGCCTGTTGGCATGTATGGTGATAAAAGCGGAAAACTCGGAT
CTCCAAGAGATTGGCGATGAAAAGGTGCAACTGTTTGTGTCTGCACTCAA
AGCCGGAAAGGAAGAAGCCATTTTCTCAAGGGCACTTGAATGCTTAAAGG
ATAAAGTGGCTAAGGAGTCGGGCCAAGCCGCAAGCTTTCTAGACCAT
BO10887.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:50:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30467-RA | 1566 | CG30467-PA | 1..1563 | 17..1579 | 7815 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:50:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30467-RA | 1782 | CG30467-RA | 135..1702 | 12..1579 | 7825 | 99.9 | Plus |
| CG8187-RA | 1698 | CG8187-RA | 1318..1674 | 1579..1223 | 1785 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:50:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15538309..15539519 | 12..1222 | 6040 | 99.9 | Plus |
| 2R | 25286936 | 2R | 15539578..15539934 | 1223..1579 | 1785 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:50:39 has no hits.
BO10887.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:48:54 Download gff for
BO10887.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30467-RA | 1..1566 | 17..1583 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:20:15 Download gff for
BO10887.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30467-RA | 93..1667 | 9..1583 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:55 Download gff for
BO10887.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30467-RA | 140..1702 | 17..1581 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:48:54 Download gff for
BO10887.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30467-RA | 93..1667 | 9..1583 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:53:58 Download gff for
BO10887.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30467-RA | 140..1702 | 17..1581 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:53:58 Download gff for
BO10887.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15538314..15539519 | 17..1222 | 100 | -> | Plus |
| 2R | 15539578..15539934 | 1223..1581 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:55 Download gff for
BO10887.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11425819..11427024 | 17..1222 | 100 | -> | Plus |
| arm_2R | 11427083..11427439 | 1223..1581 | 99 | | Plus |
BO10887.pep Sequence
Translation from 16 to 1597
> BO10887.pep
MPKEEAEPSASGLAVAAKQNDVPSAENSNHKESDAYASASASASSASTTP
PPAQEDAEEAELLERMRGDAVGNTMYSSRFILKTVMRVGELLRHSTLDQQ
LEDDLCKVWDMSVSPEVVTLLLENGAIDPIMYTLVAGCEDVRLYEILIGL
LGNMCAQVECAEILACDRYTLETLFKMTYCMDTAMLIQLMRLFQYIMAHV
LSGKEKFAVNWYICFAAFENSAQNLGRILQLSVSDELLVAALKATNAVLA
SCALVEEENANSTLNLKPFAEVFLVPELCEGVNSAFLRLMRDDQTKLTDE
EAGEDNEDAEVPAAHDSDEDADVGYDSCGPKITCDVEIIQTYLNICTILV
QLPEAQASMDVYAPSIVSCLARILQFLQQPLQLIPLGERQEEYLEDLAHI
WSRLKYFYHKEAFLNLLELWYRLKQHIDNYTGGSDPDANEFEEDEEEEDD
APKEQYVENALKLLRLLACMVIKAENSDLQEIGDEKVQLFVSALKAGKEE
AIFSRALECLKDKVAKESGQAASFLDH
BO10887.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:31:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30467-PA | 521 | CG30467-PA | 1..521 | 1..521 | 2658 | 100 | Plus |
