Clone Sequence Records
BO10890.3prime Sequence
940 bp (875 high quality bases) assembled on 2006-04-19
> BO10890.3prime
ATGGTCTAGAAAGCTTGCGACAAAGACCTTGGCGAGGCCATCGGCCCCGG
CACTAGCAATGTACGGCTTTGTGGCATGGAAGGCCACATCGAATATGCTC
TCGTCAAACTTCTTGCGATGCGCTGTGATCTCCTGCACGCACGTCTTATT
GTCCAGGTTCCACAGCCGTATCGAGCAGTCGTGCGAGCCGGATAGCAAAT
ACAGGCCATGAGCATCGACGGCCAGCGAGGTGACCGGCTCTAAATGCGCC
ACCATGGAGTGTACCAGCGTGCCGGATGTGTTGTCCCAGAAGCGGATGTG
ACGATCCTCGTGCGCGGTTATCGTAATGGGTAGCGTTGGGTGTGACACCA
CCTTGTTAATGAACTTCCCCGTGTTGCCAGACATCTCCTGCGCCGCCTCC
AGACGCACCACCTGCTTGCCCGTCTCCGTATCGTACACGATGCAGTGGGC
ACTGTTGTAGGCCACCACGATATGGTCAACCTCATTGCGAACAAAGTCAA
CGGATGAGGGTACACCCTCTGCCTCGGAGGCTGTGTATGTGCGCAGCAGC
GGTTCCTTATTGTATGGCGACCACAGCTTAACCGTTCCATCCGCTGAGCA
TGACACAATGTTGCTTTGCATGGTGGTAAGGCCCCACACGGCATCCGTAT
GCCCCTCGAGCGTGCCGGAATGCACGTTCGGATCATAGCAATCGTACGGA
TCGATATTCGGCGACGGCAATTGCCAGCATTCAATGTTACCGTCCAGCCC
GCCCGAATAGCATGTCTCGCCGCTGGACGACATGCCCAGGCACAGAACTG
GACCCGTATGGGCCCTGAACGTATACAGCGGTTCCACATCCAAGCTGGCC
GACTTTTTGGCCTGCACCGTCTTCTGAAGGTCCACAGCTTAAGCGTATGA
TCCCTCGAAGCCGTGATCAGCACCGGCTCCTCTGGGTGAA
BO10890.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:12:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7392-PA | 2193 | Cka-RA | 1328..2190 | 881..19 | 4315 | 100 | Minus |
CG7392-PB | 2193 | Cka-RB | 1328..2190 | 881..19 | 4315 | 100 | Minus |
CG7392-PD | 2193 | Cka-RD | 1328..2190 | 881..19 | 4315 | 100 | Minus |
CG7392-PC | 2193 | Cka-RC | 1328..2190 | 881..19 | 4315 | 100 | Minus |
CG7392-PA | 2193 | Cka-RA | 1268..1301 | 940..907 | 170 | 100 | Minus |
CG7392-PB | 2193 | Cka-RB | 1268..1301 | 940..907 | 170 | 100 | Minus |
CG7392-PD | 2193 | Cka-RD | 1268..1301 | 940..907 | 170 | 100 | Minus |
CG7392-PC | 2193 | Cka-RC | 1268..1301 | 940..907 | 170 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:39:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cka-RG | 2738 | CG7392-RG | 1561..2483 | 940..19 | 4545 | 99.7 | Minus |
Cka-RF | 5366 | CG7392-RF | 1816..2738 | 940..19 | 4545 | 99.7 | Minus |
Cka-RE | 2819 | CG7392-RE | 1642..2564 | 940..19 | 4545 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:38:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8037276..8038198 | 940..19 | 4520 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:38:59 has no hits.
BO10890.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:52:16 Download gff for
BO10890.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cka-PA | 1270..2193 | 15..938 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:10:22 Download gff for
BO10890.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7392-PD | 1270..2193 | 15..938 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 02:02:13 Download gff for
BO10890.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cka-RE | 1642..2567 | 15..940 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:17:21 Download gff for
BO10890.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cka-RE | 1642..2567 | 15..940 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:17:21 Download gff for
BO10890.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8037276..8038201 | 15..940 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 02:02:13 Download gff for
BO10890.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8037276..8038201 | 15..940 | 99 | | Minus |
BO10890.5prime Sequence
975 bp (845 high quality bases) assembled on 2006-04-19
> BO10890.5prime
GAAGTTATCAGTCGACATGGGCACCAATTCGGGAGCCACCGCTGGCATAA
ACAACAAGCCGGTTGGCGGTGCAACAGGAGCCGGCGTCCTTGTAGGCGGC
GGTGTGGGCGGTGCCAATTCCTCGATCGGCGGTGTCCTGTCGAACAGCCT
GGGCGGTGGCGGCAGCGGCGGTCTGAGCATCAGCGGCCTCAACGCTGGTG
GACAGAACGCCAATGTGGGCGGAATGGGCAACGTTGGCGGCGACGACGGC
GGAAACGGGATGGTGGGCGGCGGTGTAAATAACCAGCAGGCCACAACGCC
CCAATACACAATACCGGGCATCTTGCACTTCATCCAGCACGAGTGGTCGC
GCTTCGAGCTGGAGCGATCACAGTGGGACGTGGACAGGGCCGAATTGCAG
GCTCGCATTGCTATGCTGCTTGGAGAGCGCAAGTGCTTGGAAAGCCTCAA
ATCGGATTTGACGCGCCGCATCAAGATGCTGGAGTACGCACTGCGCCAGG
AGCGTGCGAAATTCTATCGTTTAAAATACGGCACCGATCCGCCGCAGCTC
AATGAGTTCAAGCCATCGAACGAGGATGCCGGACTGGCCGGTGAGGTGGC
CACTGACTCGGAGGTGCCCTACAGCAGTGTCTCGAACACTACGTGGCGGC
AGGGGCGTCAGATGCTGCGACAGTATCTGGCCGAGATTGGCTACACAGAC
AACATCATCGATGTGCGTTCAAATCGGGTGCGTTCGATCCTTGGCCTAAA
CAATAATGCCGAGCACGACGGCAGCGGCGGAGGACTGGGTGGTGGACTTG
GCGGCGGCACCGGCGGCGAGAACCTTAGCCCAAACATCAATGGAAACGAG
AGCAAACAACGCGCATCGGAGACGGAAAGGCGTCATACTCCCGGCTAAAA
AGTGCAACAATCGATCGATGAAATAATCGTGGACACCGAGGCAGCTGTGA
TGGCGAACTTTGAGTTCCTGGGCGC
BO10890.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:12:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7392-PA | 2193 | Cka-RA | 1..877 | 17..893 | 4285 | 99.5 | Plus |
CG7392-PB | 2193 | Cka-RB | 1..877 | 17..893 | 4285 | 99.5 | Plus |
CG7392-PD | 2193 | Cka-RD | 1..877 | 17..893 | 4285 | 99.5 | Plus |
CG7392-PC | 2193 | Cka-RC | 1..877 | 17..893 | 4285 | 99.5 | Plus |
CG7392-PA | 2193 | Cka-RA | 881..959 | 897..975 | 395 | 100 | Plus |
CG7392-PB | 2193 | Cka-RB | 881..959 | 897..975 | 395 | 100 | Plus |
CG7392-PD | 2193 | Cka-RD | 881..959 | 897..975 | 395 | 100 | Plus |
CG7392-PC | 2193 | Cka-RC | 881..959 | 897..975 | 395 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:35:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cka-RF | 5366 | CG7392-RF | 498..1456 | 17..975 | 4690 | 99.4 | Plus |
Cka-RE | 2819 | CG7392-RE | 318..1276 | 17..975 | 4690 | 99.4 | Plus |
Cka-RC | 3254 | CG7392-RC | 765..1723 | 17..975 | 4690 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:35:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8035817..8036297 | 397..877 | 2375 | 99.6 | Plus |
2L | 23513712 | 2L | 8032258..8032642 | 17..401 | 1925 | 100 | Plus |
2L | 23513712 | 2L | 8036360..8036454 | 881..975 | 430 | 96.8 | Plus |
Blast to na_te.dros performed on 2015-02-11 18:35:06 has no hits.
BO10890.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:52:17 Download gff for
BO10890.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cka-PA | 1..959 | 17..975 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:10:23 Download gff for
BO10890.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7392-PD | 1..959 | 17..975 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 16:36:35 Download gff for
BO10890.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cka-RC | 765..1723 | 17..975 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 20:21:43 Download gff for
BO10890.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cka-RC | 765..1723 | 17..975 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 20:21:43 Download gff for
BO10890.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8032258..8032641 | 17..400 | 100 | -> | Plus |
2L | 8035821..8036302 | 401..879 | 98 | -> | Plus |
2L | 8036358..8036454 | 880..975 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 16:36:35 Download gff for
BO10890.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8032258..8032641 | 17..400 | 100 | -> | Plus |
arm_2L | 8035821..8036302 | 401..879 | 98 | -> | Plus |
arm_2L | 8036358..8036454 | 880..975 | 96 | | Plus |
BO10890.complete Sequence
2224 bp (2224 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631914
> BO10890.complete
GAAGTTATCAGTCGACATGGGCACCAATTCGGGAGCCACCGCTGGCATAA
ACAACAAGCCGGTTGGCGGTGCAACAGGAGCCGGCGTCCTTGTAGGCGGC
GGTGTGGGCGGTGCCAATTCCTCGATCGGCGGTGTCCTGTCGAACAGCCT
GGGCGGTGGCGGCAGCGGCGGTCTGAGCATCAGCGGCCTCAACGCTGGTG
GACAGAACGCCAATGTGGGCGGAATGGGCAACGTTGGCGGCGACGACGGC
GGAAACGGGATGGTGGGCGGCGGTGTAAATAACCAGCAGGCCACAACGCC
CCAATACACAATACCGGGCATCTTGCACTTCATCCAGCACGAGTGGTCGC
GCTTCGAGCTGGAGCGATCACAGTGGGACGTGGACAGGGCCGAATTGCAG
GCTCGCATTGCTATGCTGCTTGGAGAGCGCAAGTGCTTGGAAAGCCTCAA
ATCGGATTTGACGCGCCGCATCAAGATGCTGGAGTACGCACTGCGCCAGG
AGCGTGCGAAATTCTATCGTTTAAAATACGGCACCGATCCGCCGCAGCTC
AATGAGTTCAAGCCATCGAACGAGGATGCCGGACTGGCCGGTGAGGTGGC
CACTGACTCGGAGGTGCCCTACAGCAGTGTCTCGAACACTACGTGGCGGC
AGGGGCGTCAGATGCTGCGACAGTATCTGGCCGAGATTGGCTACACAGAC
AACATCATCGATGTGCGTTCAAATCGGGTGCGTTCGATCCTTGGCCTAAA
CAATAATGCCGAGCACGACGGCAGCGGCGGAGGACTGGGTGGTGGACTTG
GCGGCGGCACCGGCGGCGAGAACCTTAGCCCAAACATCAATGGAAACGAG
AGCAACAAACGCGCATCGGAGACGGAAGGCCGTCATACTCCCGCTAAAAA
AGTGCAACAATCGATCGATGAAATAATCGTGGACACCGAGGCAGCTGTGA
TGGCGAACTTTGAGTTCCTGGGCGCCACCGAGATGTCCGACGACGACGAG
ATATCTGACGATCTGGAAATGGTGGCCACCGACAATGACGACACAGACGT
AAAGCTGGCCAAGCGCGCCAAGTCTGGCAAGGATATGCTCACCGAGGAGG
TGGACGGCTCGTTGGGACTGGGTGAGCTTGCCCAGCTGACGGTGAATAAC
GAATCTGATGGCGCCTACGATGCGAACTCCAAGGATGGAACTGGCGGCAG
TGCCGGCGGTGCTGGTTACCGCAAAACCTGGAACGCCAAGTACACGCTTC
GCTCGCACTTTGACGGAGTACGATCACTTATCTTTCACCCAGAGGAGCCG
GTGCTGATCACGGCTTCCGAGGATCATACGCTTAAGCTGTGGAACCTTCA
GAAGACGGTGCAGGCCAAAAAGTCGGCCAGCTTGGATGTGGAACCGCTGT
ATACGTTCAGGGCCCATACGGGTCCAGTTCTGTGCCTGGGCATGTCGTCC
AGCGGCGAGACATGCTATTCGGGCGGGCTGGACGGTAACATTGAATGCTG
GCAATTGCCGTCGCCGAATATCGATCCGTACGATTGCTATGATCCGAACG
TGCATTCCGGCACGCTCGAGGGGCATACGGATGCCGTGTGGGGCCTTACC
ACCATGCAAAGCAACATTGTGTCATGCTCAGCGGATGGAACGGTTAAGCT
GTGGTCGCCATACAATAAGGAACCGCTGCTGCGCACATACACAGCCTCCG
AGGCAGAGGGTGTACCCTCATCCGTTGACTTTGTTCGCAATGAGGTTGAC
CATATCGTGGTGGCCTACAACAGTGCCCACTGCATCGTGTACGATACGGA
GACGGGCAAGCAGGTGGTGCGTCTGGAGGCGGCGCAGGAGATGTCTGGCA
ACACGGGGAAGTTCATTAACAAGGTGGTGTCACACCCAACGCTACCCATT
ACGATAACCGCGCACGAGGATCGTCACATCCGCTTCTGGGACAACACATC
CGGCACGCTGGTACACTCCATGGTGGCGCATTTAGAGCCGGTCACCTCGC
TGGCCGTCGATGCTCATGGCCTGTATTTGCTATCCGGCTCGCACGACTGC
TCGATACGGCTGTGGAACCTGGACAATAAGACGTGCGTGCAGGAGATCAC
AGCGCATCGCAAGAAGTTTGACGAGAGCATATTCGATGTGGCCTTCCATG
CCACAAAGCCGTACATTGCTAGTGCCGGGGCCGATGGCCTCGCCAAGGTC
TTTGTCGCAAGCTTTCTAGACCAT
BO10890.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:28:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cka-RC | 2193 | CG7392-PC | 1..2190 | 17..2206 | 10950 | 100 | Plus |
Cka-RD | 2193 | CG7392-PD | 1..2190 | 17..2206 | 10950 | 100 | Plus |
Cka-RB | 2193 | CG7392-PB | 1..2190 | 17..2206 | 10950 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:28:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cka-RC | 3254 | CG7392-RC | 765..2954 | 17..2206 | 10950 | 100 | Plus |
Cka-RD | 3003 | CG7392-RD | 514..2703 | 17..2206 | 10950 | 100 | Plus |
Cka-RB | 5135 | CG7392-RB | 318..2507 | 17..2206 | 10950 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:28:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8037089..8038198 | 1097..2206 | 5550 | 100 | Plus |
2L | 23513712 | 2L | 8035817..8036299 | 397..879 | 2415 | 100 | Plus |
2L | 23513712 | 2L | 8032258..8032642 | 17..401 | 1925 | 100 | Plus |
2L | 23513712 | 2L | 8036356..8036576 | 877..1097 | 1105 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:28:22 has no hits.
BO10890.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:56:14 Download gff for
BO10890.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cka-RD | 1..2193 | 17..2210 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:13:14 Download gff for
BO10890.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cka-RD | 355..2547 | 17..2210 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:31:38 Download gff for
BO10890.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cka-RB | 318..2507 | 17..2208 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:56:14 Download gff for
BO10890.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cka-RD | 355..2547 | 17..2210 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:19:38 Download gff for
BO10890.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cka-RB | 318..2507 | 17..2208 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:19:38 Download gff for
BO10890.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8036358..8036576 | 879..1097 | 100 | -> | Plus |
2L | 8032258..8032641 | 17..400 | 100 | -> | Plus |
2L | 8035821..8036298 | 401..878 | 100 | -> | Plus |
2L | 8037090..8038198 | 1098..2208 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:31:38 Download gff for
BO10890.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8032258..8032641 | 17..400 | 100 | -> | Plus |
arm_2L | 8035821..8036298 | 401..878 | 100 | -> | Plus |
arm_2L | 8036358..8036576 | 879..1097 | 100 | -> | Plus |
arm_2L | 8037090..8038198 | 1098..2208 | 99 | | Plus |
BO10890.pep Sequence
Translation from 16 to 2224
> BO10890.pep
MGTNSGATAGINNKPVGGATGAGVLVGGGVGGANSSIGGVLSNSLGGGGS
GGLSISGLNAGGQNANVGGMGNVGGDDGGNGMVGGGVNNQQATTPQYTIP
GILHFIQHEWSRFELERSQWDVDRAELQARIAMLLGERKCLESLKSDLTR
RIKMLEYALRQERAKFYRLKYGTDPPQLNEFKPSNEDAGLAGEVATDSEV
PYSSVSNTTWRQGRQMLRQYLAEIGYTDNIIDVRSNRVRSILGLNNNAEH
DGSGGGLGGGLGGGTGGENLSPNINGNESNKRASETEGRHTPAKKVQQSI
DEIIVDTEAAVMANFEFLGATEMSDDDEISDDLEMVATDNDDTDVKLAKR
AKSGKDMLTEEVDGSLGLGELAQLTVNNESDGAYDANSKDGTGGSAGGAG
YRKTWNAKYTLRSHFDGVRSLIFHPEEPVLITASEDHTLKLWNLQKTVQA
KKSASLDVEPLYTFRAHTGPVLCLGMSSSGETCYSGGLDGNIECWQLPSP
NIDPYDCYDPNVHSGTLEGHTDAVWGLTTMQSNIVSCSADGTVKLWSPYN
KEPLLRTYTASEAEGVPSSVDFVRNEVDHIVVAYNSAHCIVYDTETGKQV
VRLEAAQEMSGNTGKFINKVVSHPTLPITITAHEDRHIRFWDNTSGTLVH
SMVAHLEPVTSLAVDAHGLYLLSGSHDCSIRLWNLDNKTCVQEITAHRKK
FDESIFDVAFHATKPYIASAGADGLAKVFVASFLDH
BO10890.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:52:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cka-PC | 730 | CG7392-PC | 1..730 | 1..730 | 3833 | 100 | Plus |
Cka-PD | 730 | CG7392-PD | 1..730 | 1..730 | 3833 | 100 | Plus |
Cka-PB | 730 | CG7392-PB | 1..730 | 1..730 | 3833 | 100 | Plus |
Cka-PA | 730 | CG7392-PA | 1..730 | 1..730 | 3833 | 100 | Plus |
Cka-PF | 747 | CG7392-PF | 1..747 | 1..730 | 3805 | 97.7 | Plus |