Clone BO10890 Report

Search the DGRC for BO10890

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:108
Well:90
Vector:pDNR-Dual
Associated Gene/TranscriptCka-RA
Protein status:BO10890.pep: validated full length
Sequenced Size:2224

Clone Sequence Records

BO10890.3prime Sequence

940 bp (875 high quality bases) assembled on 2006-04-19

> BO10890.3prime
ATGGTCTAGAAAGCTTGCGACAAAGACCTTGGCGAGGCCATCGGCCCCGG
CACTAGCAATGTACGGCTTTGTGGCATGGAAGGCCACATCGAATATGCTC
TCGTCAAACTTCTTGCGATGCGCTGTGATCTCCTGCACGCACGTCTTATT
GTCCAGGTTCCACAGCCGTATCGAGCAGTCGTGCGAGCCGGATAGCAAAT
ACAGGCCATGAGCATCGACGGCCAGCGAGGTGACCGGCTCTAAATGCGCC
ACCATGGAGTGTACCAGCGTGCCGGATGTGTTGTCCCAGAAGCGGATGTG
ACGATCCTCGTGCGCGGTTATCGTAATGGGTAGCGTTGGGTGTGACACCA
CCTTGTTAATGAACTTCCCCGTGTTGCCAGACATCTCCTGCGCCGCCTCC
AGACGCACCACCTGCTTGCCCGTCTCCGTATCGTACACGATGCAGTGGGC
ACTGTTGTAGGCCACCACGATATGGTCAACCTCATTGCGAACAAAGTCAA
CGGATGAGGGTACACCCTCTGCCTCGGAGGCTGTGTATGTGCGCAGCAGC
GGTTCCTTATTGTATGGCGACCACAGCTTAACCGTTCCATCCGCTGAGCA
TGACACAATGTTGCTTTGCATGGTGGTAAGGCCCCACACGGCATCCGTAT
GCCCCTCGAGCGTGCCGGAATGCACGTTCGGATCATAGCAATCGTACGGA
TCGATATTCGGCGACGGCAATTGCCAGCATTCAATGTTACCGTCCAGCCC
GCCCGAATAGCATGTCTCGCCGCTGGACGACATGCCCAGGCACAGAACTG
GACCCGTATGGGCCCTGAACGTATACAGCGGTTCCACATCCAAGCTGGCC
GACTTTTTGGCCTGCACCGTCTTCTGAAGGTCCACAGCTTAAGCGTATGA
TCCCTCGAAGCCGTGATCAGCACCGGCTCCTCTGGGTGAA

BO10890.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:12:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG7392-PA 2193 Cka-RA 1328..2190 881..19 4315 100 Minus
CG7392-PB 2193 Cka-RB 1328..2190 881..19 4315 100 Minus
CG7392-PD 2193 Cka-RD 1328..2190 881..19 4315 100 Minus
CG7392-PC 2193 Cka-RC 1328..2190 881..19 4315 100 Minus
CG7392-PA 2193 Cka-RA 1268..1301 940..907 170 100 Minus
CG7392-PB 2193 Cka-RB 1268..1301 940..907 170 100 Minus
CG7392-PD 2193 Cka-RD 1268..1301 940..907 170 100 Minus
CG7392-PC 2193 Cka-RC 1268..1301 940..907 170 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:39:01
Subject Length Description Subject Range Query Range Score Percent Strand
Cka-RG 2738 CG7392-RG 1561..2483 940..19 4545 99.7 Minus
Cka-RF 5366 CG7392-RF 1816..2738 940..19 4545 99.7 Minus
Cka-RE 2819 CG7392-RE 1642..2564 940..19 4545 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:38:58
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8037276..8038198 940..19 4520 99.6 Minus
Blast to na_te.dros performed on 2015-02-12 10:38:59 has no hits.

BO10890.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:52:16 Download gff for BO10890.3prime
Subject Subject Range Query Range Percent Splice Strand
Cka-PA 1270..2193 15..938 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:10:22 Download gff for BO10890.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7392-PD 1270..2193 15..938 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 02:02:13 Download gff for BO10890.3prime
Subject Subject Range Query Range Percent Splice Strand
Cka-RE 1642..2567 15..940 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:17:21 Download gff for BO10890.3prime
Subject Subject Range Query Range Percent Splice Strand
Cka-RE 1642..2567 15..940 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:17:21 Download gff for BO10890.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 8037276..8038201 15..940 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 02:02:13 Download gff for BO10890.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8037276..8038201 15..940 99   Minus

BO10890.5prime Sequence

975 bp (845 high quality bases) assembled on 2006-04-19

> BO10890.5prime
GAAGTTATCAGTCGACATGGGCACCAATTCGGGAGCCACCGCTGGCATAA
ACAACAAGCCGGTTGGCGGTGCAACAGGAGCCGGCGTCCTTGTAGGCGGC
GGTGTGGGCGGTGCCAATTCCTCGATCGGCGGTGTCCTGTCGAACAGCCT
GGGCGGTGGCGGCAGCGGCGGTCTGAGCATCAGCGGCCTCAACGCTGGTG
GACAGAACGCCAATGTGGGCGGAATGGGCAACGTTGGCGGCGACGACGGC
GGAAACGGGATGGTGGGCGGCGGTGTAAATAACCAGCAGGCCACAACGCC
CCAATACACAATACCGGGCATCTTGCACTTCATCCAGCACGAGTGGTCGC
GCTTCGAGCTGGAGCGATCACAGTGGGACGTGGACAGGGCCGAATTGCAG
GCTCGCATTGCTATGCTGCTTGGAGAGCGCAAGTGCTTGGAAAGCCTCAA
ATCGGATTTGACGCGCCGCATCAAGATGCTGGAGTACGCACTGCGCCAGG
AGCGTGCGAAATTCTATCGTTTAAAATACGGCACCGATCCGCCGCAGCTC
AATGAGTTCAAGCCATCGAACGAGGATGCCGGACTGGCCGGTGAGGTGGC
CACTGACTCGGAGGTGCCCTACAGCAGTGTCTCGAACACTACGTGGCGGC
AGGGGCGTCAGATGCTGCGACAGTATCTGGCCGAGATTGGCTACACAGAC
AACATCATCGATGTGCGTTCAAATCGGGTGCGTTCGATCCTTGGCCTAAA
CAATAATGCCGAGCACGACGGCAGCGGCGGAGGACTGGGTGGTGGACTTG
GCGGCGGCACCGGCGGCGAGAACCTTAGCCCAAACATCAATGGAAACGAG
AGCAAACAACGCGCATCGGAGACGGAAAGGCGTCATACTCCCGGCTAAAA
AGTGCAACAATCGATCGATGAAATAATCGTGGACACCGAGGCAGCTGTGA
TGGCGAACTTTGAGTTCCTGGGCGC

BO10890.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:12:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG7392-PA 2193 Cka-RA 1..877 17..893 4285 99.5 Plus
CG7392-PB 2193 Cka-RB 1..877 17..893 4285 99.5 Plus
CG7392-PD 2193 Cka-RD 1..877 17..893 4285 99.5 Plus
CG7392-PC 2193 Cka-RC 1..877 17..893 4285 99.5 Plus
CG7392-PA 2193 Cka-RA 881..959 897..975 395 100 Plus
CG7392-PB 2193 Cka-RB 881..959 897..975 395 100 Plus
CG7392-PD 2193 Cka-RD 881..959 897..975 395 100 Plus
CG7392-PC 2193 Cka-RC 881..959 897..975 395 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:35:09
Subject Length Description Subject Range Query Range Score Percent Strand
Cka-RF 5366 CG7392-RF 498..1456 17..975 4690 99.4 Plus
Cka-RE 2819 CG7392-RE 318..1276 17..975 4690 99.4 Plus
Cka-RC 3254 CG7392-RC 765..1723 17..975 4690 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:35:04
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8035817..8036297 397..877 2375 99.6 Plus
2L 23513712 2L 8032258..8032642 17..401 1925 100 Plus
2L 23513712 2L 8036360..8036454 881..975 430 96.8 Plus
Blast to na_te.dros performed on 2015-02-11 18:35:06 has no hits.

BO10890.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:52:17 Download gff for BO10890.5prime
Subject Subject Range Query Range Percent Splice Strand
Cka-PA 1..959 17..975 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:10:23 Download gff for BO10890.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7392-PD 1..959 17..975 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 16:36:35 Download gff for BO10890.5prime
Subject Subject Range Query Range Percent Splice Strand
Cka-RC 765..1723 17..975 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 20:21:43 Download gff for BO10890.5prime
Subject Subject Range Query Range Percent Splice Strand
Cka-RC 765..1723 17..975 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 20:21:43 Download gff for BO10890.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 8032258..8032641 17..400 100 -> Plus
2L 8035821..8036302 401..879 98 -> Plus
2L 8036358..8036454 880..975 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 16:36:35 Download gff for BO10890.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8032258..8032641 17..400 100 -> Plus
arm_2L 8035821..8036302 401..879 98 -> Plus
arm_2L 8036358..8036454 880..975 96   Plus

BO10890.complete Sequence

2224 bp (2224 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ631914

> BO10890.complete
GAAGTTATCAGTCGACATGGGCACCAATTCGGGAGCCACCGCTGGCATAA
ACAACAAGCCGGTTGGCGGTGCAACAGGAGCCGGCGTCCTTGTAGGCGGC
GGTGTGGGCGGTGCCAATTCCTCGATCGGCGGTGTCCTGTCGAACAGCCT
GGGCGGTGGCGGCAGCGGCGGTCTGAGCATCAGCGGCCTCAACGCTGGTG
GACAGAACGCCAATGTGGGCGGAATGGGCAACGTTGGCGGCGACGACGGC
GGAAACGGGATGGTGGGCGGCGGTGTAAATAACCAGCAGGCCACAACGCC
CCAATACACAATACCGGGCATCTTGCACTTCATCCAGCACGAGTGGTCGC
GCTTCGAGCTGGAGCGATCACAGTGGGACGTGGACAGGGCCGAATTGCAG
GCTCGCATTGCTATGCTGCTTGGAGAGCGCAAGTGCTTGGAAAGCCTCAA
ATCGGATTTGACGCGCCGCATCAAGATGCTGGAGTACGCACTGCGCCAGG
AGCGTGCGAAATTCTATCGTTTAAAATACGGCACCGATCCGCCGCAGCTC
AATGAGTTCAAGCCATCGAACGAGGATGCCGGACTGGCCGGTGAGGTGGC
CACTGACTCGGAGGTGCCCTACAGCAGTGTCTCGAACACTACGTGGCGGC
AGGGGCGTCAGATGCTGCGACAGTATCTGGCCGAGATTGGCTACACAGAC
AACATCATCGATGTGCGTTCAAATCGGGTGCGTTCGATCCTTGGCCTAAA
CAATAATGCCGAGCACGACGGCAGCGGCGGAGGACTGGGTGGTGGACTTG
GCGGCGGCACCGGCGGCGAGAACCTTAGCCCAAACATCAATGGAAACGAG
AGCAACAAACGCGCATCGGAGACGGAAGGCCGTCATACTCCCGCTAAAAA
AGTGCAACAATCGATCGATGAAATAATCGTGGACACCGAGGCAGCTGTGA
TGGCGAACTTTGAGTTCCTGGGCGCCACCGAGATGTCCGACGACGACGAG
ATATCTGACGATCTGGAAATGGTGGCCACCGACAATGACGACACAGACGT
AAAGCTGGCCAAGCGCGCCAAGTCTGGCAAGGATATGCTCACCGAGGAGG
TGGACGGCTCGTTGGGACTGGGTGAGCTTGCCCAGCTGACGGTGAATAAC
GAATCTGATGGCGCCTACGATGCGAACTCCAAGGATGGAACTGGCGGCAG
TGCCGGCGGTGCTGGTTACCGCAAAACCTGGAACGCCAAGTACACGCTTC
GCTCGCACTTTGACGGAGTACGATCACTTATCTTTCACCCAGAGGAGCCG
GTGCTGATCACGGCTTCCGAGGATCATACGCTTAAGCTGTGGAACCTTCA
GAAGACGGTGCAGGCCAAAAAGTCGGCCAGCTTGGATGTGGAACCGCTGT
ATACGTTCAGGGCCCATACGGGTCCAGTTCTGTGCCTGGGCATGTCGTCC
AGCGGCGAGACATGCTATTCGGGCGGGCTGGACGGTAACATTGAATGCTG
GCAATTGCCGTCGCCGAATATCGATCCGTACGATTGCTATGATCCGAACG
TGCATTCCGGCACGCTCGAGGGGCATACGGATGCCGTGTGGGGCCTTACC
ACCATGCAAAGCAACATTGTGTCATGCTCAGCGGATGGAACGGTTAAGCT
GTGGTCGCCATACAATAAGGAACCGCTGCTGCGCACATACACAGCCTCCG
AGGCAGAGGGTGTACCCTCATCCGTTGACTTTGTTCGCAATGAGGTTGAC
CATATCGTGGTGGCCTACAACAGTGCCCACTGCATCGTGTACGATACGGA
GACGGGCAAGCAGGTGGTGCGTCTGGAGGCGGCGCAGGAGATGTCTGGCA
ACACGGGGAAGTTCATTAACAAGGTGGTGTCACACCCAACGCTACCCATT
ACGATAACCGCGCACGAGGATCGTCACATCCGCTTCTGGGACAACACATC
CGGCACGCTGGTACACTCCATGGTGGCGCATTTAGAGCCGGTCACCTCGC
TGGCCGTCGATGCTCATGGCCTGTATTTGCTATCCGGCTCGCACGACTGC
TCGATACGGCTGTGGAACCTGGACAATAAGACGTGCGTGCAGGAGATCAC
AGCGCATCGCAAGAAGTTTGACGAGAGCATATTCGATGTGGCCTTCCATG
CCACAAAGCCGTACATTGCTAGTGCCGGGGCCGATGGCCTCGCCAAGGTC
TTTGTCGCAAGCTTTCTAGACCAT

BO10890.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:28:23
Subject Length Description Subject Range Query Range Score Percent Strand
Cka-RC 2193 CG7392-PC 1..2190 17..2206 10950 100 Plus
Cka-RD 2193 CG7392-PD 1..2190 17..2206 10950 100 Plus
Cka-RB 2193 CG7392-PB 1..2190 17..2206 10950 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:28:24
Subject Length Description Subject Range Query Range Score Percent Strand
Cka-RC 3254 CG7392-RC 765..2954 17..2206 10950 100 Plus
Cka-RD 3003 CG7392-RD 514..2703 17..2206 10950 100 Plus
Cka-RB 5135 CG7392-RB 318..2507 17..2206 10950 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:28:21
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8037089..8038198 1097..2206 5550 100 Plus
2L 23513712 2L 8035817..8036299 397..879 2415 100 Plus
2L 23513712 2L 8032258..8032642 17..401 1925 100 Plus
2L 23513712 2L 8036356..8036576 877..1097 1105 100 Plus
Blast to na_te.dros performed on 2014-11-27 08:28:22 has no hits.

BO10890.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:56:14 Download gff for BO10890.complete
Subject Subject Range Query Range Percent Splice Strand
Cka-RD 1..2193 17..2210 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:13:14 Download gff for BO10890.complete
Subject Subject Range Query Range Percent Splice Strand
Cka-RD 355..2547 17..2210 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:31:38 Download gff for BO10890.complete
Subject Subject Range Query Range Percent Splice Strand
Cka-RB 318..2507 17..2208 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:56:14 Download gff for BO10890.complete
Subject Subject Range Query Range Percent Splice Strand
Cka-RD 355..2547 17..2210 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:19:38 Download gff for BO10890.complete
Subject Subject Range Query Range Percent Splice Strand
Cka-RB 318..2507 17..2208 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:19:38 Download gff for BO10890.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8036358..8036576 879..1097 100 -> Plus
2L 8032258..8032641 17..400 100 -> Plus
2L 8035821..8036298 401..878 100 -> Plus
2L 8037090..8038198 1098..2208 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:31:38 Download gff for BO10890.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8032258..8032641 17..400 100 -> Plus
arm_2L 8035821..8036298 401..878 100 -> Plus
arm_2L 8036358..8036576 879..1097 100 -> Plus
arm_2L 8037090..8038198 1098..2208 99   Plus

BO10890.pep Sequence

Translation from 16 to 2224

> BO10890.pep
MGTNSGATAGINNKPVGGATGAGVLVGGGVGGANSSIGGVLSNSLGGGGS
GGLSISGLNAGGQNANVGGMGNVGGDDGGNGMVGGGVNNQQATTPQYTIP
GILHFIQHEWSRFELERSQWDVDRAELQARIAMLLGERKCLESLKSDLTR
RIKMLEYALRQERAKFYRLKYGTDPPQLNEFKPSNEDAGLAGEVATDSEV
PYSSVSNTTWRQGRQMLRQYLAEIGYTDNIIDVRSNRVRSILGLNNNAEH
DGSGGGLGGGLGGGTGGENLSPNINGNESNKRASETEGRHTPAKKVQQSI
DEIIVDTEAAVMANFEFLGATEMSDDDEISDDLEMVATDNDDTDVKLAKR
AKSGKDMLTEEVDGSLGLGELAQLTVNNESDGAYDANSKDGTGGSAGGAG
YRKTWNAKYTLRSHFDGVRSLIFHPEEPVLITASEDHTLKLWNLQKTVQA
KKSASLDVEPLYTFRAHTGPVLCLGMSSSGETCYSGGLDGNIECWQLPSP
NIDPYDCYDPNVHSGTLEGHTDAVWGLTTMQSNIVSCSADGTVKLWSPYN
KEPLLRTYTASEAEGVPSSVDFVRNEVDHIVVAYNSAHCIVYDTETGKQV
VRLEAAQEMSGNTGKFINKVVSHPTLPITITAHEDRHIRFWDNTSGTLVH
SMVAHLEPVTSLAVDAHGLYLLSGSHDCSIRLWNLDNKTCVQEITAHRKK
FDESIFDVAFHATKPYIASAGADGLAKVFVASFLDH

BO10890.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:52:29
Subject Length Description Subject Range Query Range Score Percent Strand
Cka-PC 730 CG7392-PC 1..730 1..730 3833 100 Plus
Cka-PD 730 CG7392-PD 1..730 1..730 3833 100 Plus
Cka-PB 730 CG7392-PB 1..730 1..730 3833 100 Plus
Cka-PA 730 CG7392-PA 1..730 1..730 3833 100 Plus
Cka-PF 747 CG7392-PF 1..747 1..730 3805 97.7 Plus