Clone BO10893 Report

Search the DGRC for BO10893

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:108
Well:93
Vector:pDNR-Dual
Associated Gene/Transcriptssp2-RA
Protein status:BO10893.pep: Imported from assembly
Sequenced Size:2980

Clone Sequence Records

BO10893.complete Sequence

2980 bp assembled on 2010-04-13

GenBank Submission: KX795364

> BO10893.complete
GAAGTTATCAGTCGACATGGATATCCTGGACATCGATGAGGCACTAAAGG
ATGATTCATATATATTTCTGGCGGATAAGACCCACGACGATGTCTCCAAC
ATATTGCAGCAGTGGAAGACGAACAATCAGCCGCCGTTGCAGCAATTGCA
CTTGCAGTACAACAACGAGGCCTTCAAAAACAATTCGAAAACCTTTACTC
GCCCAAAGCGTCGGAATCTGGATTTCAGCCAAAATGGAGCGGGAAATGAC
AGCGGTGTTGGAACCGGGTCGGTCGCGGGTGCCCCAGCAATGCTTCAGCT
GGAAATTGGCGGTCTTGTCACGACGAATATGCACAAATCCTTCCTGCAAG
ACACCTCACCGCCGTCTTCCATCTGCTCCTCCATGAACACTGAACGGATG
AACAACTCGCTAATCACCTCAGCAGACTTTACGAACTTGAACTTCCTTCA
ATCCACAATTGGTCTTGAGCAGGATCCAAACCTTACCACTACGCTTACCA
ACCAGACAACTGATAACATGGGAATCGGCGGCAGCATAGGCGGATATACG
CTCAGTGACATGATCCGGGATCGCAAGGCGCTGGAGTCGCTGACCATGTG
TGAGGACGATGGGACTCTTATCAAAGACTCGCACATCGGGCAAATTGACG
AAATATCGTTGACACTGAGCAAAACTGCTTCCGGCTGCAGCACAATGGAC
AACAGCACAGACAGTATGTCCATTCCCCTGGCCGCAGATCGAACGATGCC
CGTTGTGGTATCGGCAGTTTGTCCTGCCCTACAGCGTACCATGATTTTAG
GGGAGGAGATGATCGGCGACACAACTTTTAACCTCGTGGATAGCCTTACA
ACTTCTGCGCTGCAATCAGAGTCTGAGTCTCTGCCAGTCGATGGAAATGC
GACATTCAAAAGACCCACTGCGAGTGCTACTACAGCGGACGAAACCCAGG
TGCTAACAGGTAGGCAGATGAATACTACCTTCACCGACGGTTGCAACACT
CCTGAGGGCCGCTGTGAAACGCCTGAAAATATTGACAGGAAGCTGGCCTT
GCTCACCATGGAATCCTCCACACCACTTACAACAAACATGCGCTCACACT
GCTACCACAATAACAACAATAATAACAAGGCAGGATATACCCCTACCCTA
AAGGGAAGGGGAGATATGAACCTGTCCCCAATTGTTGGCGCAACACCGCA
AAAACCAACTGGAACCGCACCAGGGCGATTAAACAACACCTTTGAGCCCG
TGGCAAAAACAGCTCCGTTCAACGGCGAGAAGTTCGTGCTGGACACTATG
GAGCTCTTGGAGCAGATCGAACAGCCGCTGGATGGCACTTACAACCTGCA
AATGTCTGAACAGCACAGGCAGATGCAATGCGTCATGGACTTGGCTGAGG
CGGAAGTGGAGATGCTGGCCCAGCAGGGCGACGAAGAGCAATTCGAGAAT
ATGCTTGCCGAGCTGGGCAAGGTGAATACCCTAAACGAGGAGCAACTGAA
GATGCAAAAGTCGCTAGATACCATCAAACGGCGCTTCCATAGAGATGAGG
CGGAGGCAGAGGAGCGTGAAGAGGAATTGCAGCAGTCGGCAGCCGAAAAG
GTGGACACCCCAGTTCTAAATCAGAGCCACTCCAGCAGCAACAGCAGCGG
CGGTGGTGGCGAACGGCTGCTCAGTCGCCGAAGTCGTCTCTACGACGATG
TCAACCTTAGTGCAATGCACGGCAGTAATGGAAGTTCGACCAGCACCAAC
TCTGCCTCATTCATCGTCCAGCGTAGAGATATGCCACAAGTGGAGCAGCC
TGCACCAGATCCTGATCCCGAACCAGCGGAAGAGCCTCCAAAGTCCCAGG
TGACAGCAGAGATTGATCCGGCAAGCTATAAGCTGCCGGAGCGAAGAGAG
CGGGATCGCGATCGCTTCAAGACCATTAAGATTTCGAAAGAAATGCGACT
GCAGCCGGAAATTATTGTGCCTTGTATAGACGATGAACCACAGCAACTCG
AGGACGAGCAAAAGCAATTAGTAGAAGATGTTCGGTACGAGGAGGATCAG
CGACAGGGTTCACCACCGGGTCGACTTTCTCGTCGAGATCAGACCACAGC
AATTAGCAACAACGCAGATGCTAGTGCGAGTAACTATCTGACCTACAAAA
AACCCAAGGAAAAGAGCCTTATCCAACGACGTCCGCAGCAGCAGGAAGCG
CCTTTATTAGCCGAGCCAGCGCCTGCGTCGACTCTTCCCCAGCCGCGTTC
CTTGTCCAGGCCTCGCTACATCAGTGGTCTTCAGAAGTTTACTACGGTGA
GCAAGGCAACTTCAGCCGGAGCGGGACTAAACGCCACTCCAGCCGCTGCT
ATGCCGACTACTGTTACAGTGCCGGCCAACGGTAACGGGGAGCTGAAGAG
CCCTATGGGTATTAAATCCAAATCTTTCCACAACTTGTCCTCCACAATGA
GCGGCGTTGGCTCTGGAGCCCTGCCAAGACCTAGTTTGGGCGGTGGACTG
CGGCGTCCCAGTGCGCAGCCGAGCAAGCTTATGAGCGGATTGCGTGGACC
AACTCAAGCCCAAGAGGATGACTCCGCTGTATTTAAAGTACCGAAATTGG
TGAGTGGGCTGCGTGCTCCTGGCCTTGCCCCGAAACGAGCAGGAGCTAAT
GGTTTAGCTCGACCTTCGTCCGGATATTACAGTCTGAGTGTTAAGACGGC
ACCAGAGGCAGACACTCCTGAGAGCCTCTCCTCAGCCTCTTCGCGTGGCA
GCCTCTATGGCCACAAGGACTCCGGTAGAACCGTTAACGGCGGAAATGTT
CCTCAACAGAATCCACAGCAAACCTTCGACATGCAGGCGCTTACCTCTAA
GCTGACCCAGGTGACTACGGGAGCGACCGGCATACCAAAGCCCTCGGGGT
TGAGACCACCATCGCAAATAAAGCGTAGCGGTCTGCCGCGACCTTCCAGC
ATTGTTAGGCGCGCAAGCTTTCTAGACCAT

BO10893.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:15:49
Subject Length Description Subject Range Query Range Score Percent Strand
ssp2-RC 2949 CG9028-PC 1..2946 17..2962 14730 100 Plus
ssp2-RA 2949 CG9028-PA 1..2946 17..2962 14730 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:15:50
Subject Length Description Subject Range Query Range Score Percent Strand
ssp2-RC 4496 CG9028-RC 141..3089 14..2962 14745 100 Plus
ssp2-RA 3435 CG9028-RA 141..3089 14..2962 14745 100 Plus
Nxf3-RC 7512 CG32135-RC 3313..6105 170..2962 13965 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:15:46
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13968761..13971101 227..2567 11705 100 Plus
3L 28110227 3L 13971419..13971660 2721..2962 1210 100 Plus
3L 28110227 3L 13971160..13971317 2565..2722 790 100 Plus
3L 28110227 3L 13965524..13965630 64..170 535 100 Plus
3L 28110227 3L 13968646..13968702 170..226 285 100 Plus
3L 28110227 3L 13965343..13965392 14..63 250 100 Plus
Blast to na_te.dros performed on 2014-11-26 15:15:47 has no hits.

BO10893.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:23:42 Download gff for BO10893.complete
Subject Subject Range Query Range Percent Splice Strand
ssp2-RA 142..3087 17..2964 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:50:24 Download gff for BO10893.complete
Subject Subject Range Query Range Percent Splice Strand
ssp2-RA 144..3089 17..2964 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:09:47 Download gff for BO10893.complete
Subject Subject Range Query Range Percent Splice Strand
ssp2-RA 144..3089 17..2964 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:09:47 Download gff for BO10893.complete
Subject Subject Range Query Range Percent Splice Strand
3L 13968761..13971100 227..2566 100 -> Plus
3L 13965346..13965392 17..63 100 -> Plus
3L 13965524..13965630 64..170 100 -> Plus
3L 13968647..13968702 171..226 100 -> Plus
3L 13971162..13971317 2567..2722 100 -> Plus
3L 13971421..13971660 2723..2964 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:50:24 Download gff for BO10893.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13958446..13958492 17..63 100 -> Plus
arm_3L 13958624..13958730 64..170 100 -> Plus
arm_3L 13961747..13961802 171..226 100 -> Plus
arm_3L 13961861..13964200 227..2566 100 -> Plus
arm_3L 13964262..13964417 2567..2722 100 -> Plus
arm_3L 13964521..13964760 2723..2964 99   Plus

BO10893.3prime Sequence

898 bp (826 high quality bases) assembled on 2006-04-19

> BO10893.3prime
ATGGTCTAGAAAGCTTGCGCGCCTAACAATGCTGGAAGGTCGCGGCAGAC
CGCTACGCTTTATTTGCGATGGTGGTCTCAACCCCGAGGGCTTTGGTATG
CCGGTCGCTCCCGTAGTCACCTGGGTCAGCTTAGAGGTAAGCGCCTGCAT
GTCGAAGGTTTGCTGTGGATTCTGTTGAGGAACATTTCCGCCGTTAACGG
TTCTACCGGAGTCCTTGTGGCCATAGAGGCTGCCACGCGAAGAGGCTGAG
GAGAGGCTCTCAGGAGTGTCTGCCTCTGGTGCCGTCTTAACACTCAGACT
GTAATATCCGGACGAAGGTCGAGCTAAACCATTAGCTCCTGCTCGTTTCG
GGGCAAGGCCAGGAGCACGCAGCCCACTCACCAATTTCGGTACTTTAAAT
ACAGCGGAGTCATCCTCTTGGGCTTGAGTTGGTCCACGCAATCCGCTCAT
AAGCTTGCTCGGCTGCGCACTGGGACGCCGCAGTCCACCGCCCAAACTAG
GTCTTGGCAGGGCTCCAGAGCCAACGCCGCTCATTGTGGAGGACAAGTTG
TGGAAAGATTTGGATTTAATACCCATAGGGCTCTTCAGCTCCCCGTTACC
GTTGGCCGGCACTGTAACAGTAGTCGGCATAGCAGCGGCTGGAGTGGCGT
TTAGTCCCGCTCCGGCTGAAGTTGCCTTGCTCACCGTAGTAAACTTCTGA
AGACCACTGATGTAGCGAGGCCTGGACAAGGAACGCGGCTGGNGAAGAGT
CGACGCAGGCGCTGGCTCGGCTAATAAAGGCGCTTCCTGCTGCTGCGGAC
GTCGTTGGATAAGGCTCTTTTCCTTGGGTTTTTTGTAGGTCAGATAGTTA
CTCGCACTAGCATCTGCGTTGTTGCTAATTGCTGTGGTCTGATCTCGA

BO10893.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:12:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG9028-PA 2949 CG9028-RA 2067..2946 898..19 4381 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:10:22
Subject Length Description Subject Range Query Range Score Percent Strand
Nxf3-RC 7512 CG32135-RC 5226..6105 898..19 4389 99.9 Minus
Nxf3-RB 6451 CG32135-RB 5226..6105 898..19 4389 99.9 Minus
ssp2-RC 4496 CG9028-RC 2210..3089 898..19 4389 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:10:15
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13970617..13971101 898..414 2414 99.8 Minus
3L 28110227 3L 13971419..13971660 260..19 1210 100 Minus
3L 28110227 3L 13971160..13971317 416..259 790 100 Minus
Blast to na_te.dros performed on 2015-02-10 22:10:18 has no hits.

BO10893.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:52:22 Download gff for BO10893.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9028-PA 2068..2949 16..897 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:10:30 Download gff for BO10893.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9028-PA 2068..2949 16..897 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:55:09 Download gff for BO10893.3prime
Subject Subject Range Query Range Percent Splice Strand
ssp2-RA 2211..3097 12..897 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:59:29 Download gff for BO10893.3prime
Subject Subject Range Query Range Percent Splice Strand
ssp2-RC 2211..3097 12..897 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:59:29 Download gff for BO10893.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 13970618..13971100 415..897 99 -> Minus
3L 13971162..13971317 259..414 100 -> Minus
3L 13971421..13971668 12..258 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:55:09 Download gff for BO10893.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13963718..13964200 415..897 99 -> Minus
arm_3L 13964262..13964417 259..414 100 -> Minus
arm_3L 13964521..13964768 12..258 98   Minus

BO10893.5prime Sequence

909 bp (817 high quality bases) assembled on 2006-04-19

> BO10893.5prime
GAAGTTATCAGTCGACATGGATATCCTGGACATCGATGAGGCACTAAAGG
ATGATTCATATATATTTCTGGCGGATAAGACCCACGACGATGTCTCCAAC
ATATTGCAGCAGTGGAAGACGAACAATCAGCCGCCGTTGCAGCAATTGCA
CTTGCAGTACAACAACGAGGCCTTCAAAAACAATTCGAAAACCTTTACTC
GCCCAAAGCGTCGGAATCTGGATTTCAGCCAAAATGGAGCGGGAAATGAC
AGCGGTGTTGGAACCGGGTCGGTCGCGGGTGCCCCAGCAATGCTTCAGCT
GGAAATTGGCGGTCTTGTCACGACGAATATGCACAAATCCTTCCTGCAAG
ACACCTCACCGCCGTCTTCCATCTGCTCCTCCATGAACACTGAACGGATG
AACAACTCGCTAATCACCTCAGCAGACTTTACGAACTTGAACTTCCTTCA
ATCCACAATTGGTCTTGAGCAGGATCCAAACCTTACCACTACGCTTACCA
ACCAGACAACTGATAACATGGGAATCGGCGGCAGCATAGGCGGATATACG
CTCAGTGACATGATCCGGGATCGCAAGGCGCTGGAGTCGCTGACCATGTG
TGAGGACGATGGGACTCTTATCAAAGACTCGCACATCGGGCAAATTGACG
AAATATCGTTGACACTGAGCAAAACTGCTTCCGGCTGCAGCACAATGGAC
AACAGCACAGACAGTATGTCCATTCCCCTGGCCGCAGATCGAACGATGCC
CGTTGTGGTATCGGCAGTTTGTCCTGCCCTACAGCGTACCATGATTTTAG
GGGAGGAGATGATCGGCGACACAACTTTTAACCTCGTGGATAGCCTTACA
ACTTCTGCGCTGCCATCAGAGTCTGAGTCTCTGCCAGTCGATGGAAATGC
GACATTCAA

BO10893.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:12:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG9028-PA 2949 CG9028-RA 1..893 17..909 4440 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 04:45:49
Subject Length Description Subject Range Query Range Score Percent Strand
ssp2-RC 4496 CG9028-RC 141..1036 14..909 4465 99.9 Plus
ssp2-RA 3435 CG9028-RA 141..1036 14..909 4465 99.9 Plus
Nxf3-RC 7512 CG32135-RC 3313..4052 170..909 3685 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 04:45:39
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13968761..13969443 227..909 3400 99.9 Plus
3L 28110227 3L 13965524..13965630 64..170 535 100 Plus
3L 28110227 3L 13968646..13968702 170..226 285 100 Plus
3L 28110227 3L 13965343..13965392 14..63 250 100 Plus
Blast to na_te.dros performed on 2015-02-10 04:45:44 has no hits.

BO10893.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:52:23 Download gff for BO10893.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9028-PA 1..891 17..907 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:10:32 Download gff for BO10893.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9028-PA 1..891 17..907 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:47:01 Download gff for BO10893.5prime
Subject Subject Range Query Range Percent Splice Strand
ssp2-RA 134..1034 7..907 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 07:24:32 Download gff for BO10893.5prime
Subject Subject Range Query Range Percent Splice Strand
ssp2-RA 134..1034 7..907 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 07:24:32 Download gff for BO10893.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 13965336..13965392 7..63 94 -> Plus
3L 13965524..13965630 64..170 100 -> Plus
3L 13968647..13968702 171..226 100 -> Plus
3L 13968761..13969441 227..907 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:47:01 Download gff for BO10893.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13958436..13958492 7..63 94 -> Plus
arm_3L 13958624..13958730 64..170 100 -> Plus
arm_3L 13961747..13961802 171..226 100 -> Plus
arm_3L 13961861..13962541 227..907 99   Plus

BO10893.pep Sequence

Translation from 16 to 2980

> BO10893.pep
MDILDIDEALKDDSYIFLADKTHDDVSNILQQWKTNNQPPLQQLHLQYNN
EAFKNNSKTFTRPKRRNLDFSQNGAGNDSGVGTGSVAGAPAMLQLEIGGL
VTTNMHKSFLQDTSPPSSICSSMNTERMNNSLITSADFTNLNFLQSTIGL
EQDPNLTTTLTNQTTDNMGIGGSIGGYTLSDMIRDRKALESLTMCEDDGT
LIKDSHIGQIDEISLTLSKTASGCSTMDNSTDSMSIPLAADRTMPVVVSA
VCPALQRTMILGEEMIGDTTFNLVDSLTTSALQSESESLPVDGNATFKRP
TASATTADETQVLTGRQMNTTFTDGCNTPEGRCETPENIDRKLALLTMES
STPLTTNMRSHCYHNNNNNNKAGYTPTLKGRGDMNLSPIVGATPQKPTGT
APGRLNNTFEPVAKTAPFNGEKFVLDTMELLEQIEQPLDGTYNLQMSEQH
RQMQCVMDLAEAEVEMLAQQGDEEQFENMLAELGKVNTLNEEQLKMQKSL
DTIKRRFHRDEAEAEEREEELQQSAAEKVDTPVLNQSHSSSNSSGGGGER
LLSRRSRLYDDVNLSAMHGSNGSSTSTNSASFIVQRRDMPQVEQPAPDPD
PEPAEEPPKSQVTAEIDPASYKLPERRERDRDRFKTIKISKEMRLQPEII
VPCIDDEPQQLEDEQKQLVEDVRYEEDQRQGSPPGRLSRRDQTTAISNNA
DASASNYLTYKKPKEKSLIQRRPQQQEAPLLAEPAPASTLPQPRSLSRPR
YISGLQKFTTVSKATSAGAGLNATPAAAMPTTVTVPANGNGELKSPMGIK
SKSFHNLSSTMSGVGSGALPRPSLGGGLRRPSAQPSKLMSGLRGPTQAQE
DDSAVFKVPKLVSGLRAPGLAPKRAGANGLARPSSGYYSLSVKTAPEADT
PESLSSASSRGSLYGHKDSGRTVNGGNVPQQNPQQTFDMQALTSKLTQVT
TGATGIPKPSGLRPPSQIKRSGLPRPSSIVRRASFLDH

BO10893.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:13:30
Subject Length Description Subject Range Query Range Score Percent Strand
ssp2-PC 982 CG9028-PC 1..982 1..982 5030 100 Plus
ssp2-PA 982 CG9028-PA 1..982 1..982 5030 100 Plus