Clone Sequence Records
BO10901.3prime Sequence
910 bp (776 high quality bases) assembled on 2006-04-19
> BO10901.3prime
ATGGTCTAGAAAGCTTGCACCCTGGAAGGTGGACATGAACTTGGCAACAA
TGTCCTTCAGCTTGGCATCGGACGCCTCCGAGATAGCACCGTCCTTGGCG
ATGGTGTCGAGCAGAGCCTGCTCGGAGGTCTTGATGTGCTGCAAGAACTC
CTTCTCGAACTTGGTGATCTTGGCGGGATCCATCTTGTCCAGATGACCGC
GCACACCGCAGTAGATAACGGCGACCTGATCCTCAATGGCCATGGGCACG
TACTGACCCTGCTTGAGCAGCTCAGTGAGGCGCACACCACGGTTCAGCAG
CTGCTGGGTGGCGGCATCCAGATCGGAACCGAACTGGGCGAAGGCAGCGA
CCTCACGGTACTGGGCCAACTCCAGCTTCATGGAACCGGCCACCTGCTTC
ATGGCCTTGGTCTGGGCAGCGGAACCCACACGGGACACGGACAGACCGAC
GTTAATGGCAGGGCGGATACCCTTGTAGAACAACTCGGTCTCCAAGAAGA
TCTGTCCGTCGGTAATCGAGATGACGTTGGTTGGAATGTAGGCGGACACA
TCGCCAGCCTGGGTCTCGATCACGGGCAGAGCAGTCAGGGAACCGCCTCC
CATGGCGGGGGACATCTTGGCGGCACGCTCCAGCAGACGCGAATGCAGGT
AGAACACATCACCGGGGTAGGCCTCACGACCTGGGGGACGACGCAGCAAC
AGGGACATCTGACGGTAGGCCACAGCCTGCTTGGACAAATCATCGTAGAT
GATCAGGGCGTGCTTGCCCTTGTCGCGGAAGTACTCTCCCATGGCGCATC
CGGAGTAGGGGGCCAAGTACTGCAGAGGAGCAGCGTCGGAGGCGGTGGCC
GACACGATCACGGAGTAGCCCATGGCGCCGGAGTCGGTCAGACGCTTCAC
GATCTGGGCG
BO10901.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:12:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3612-PA | 1659 | blw-RA | 765..1656 | 910..19 | 4460 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:44:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
blw-RA | 2252 | CG3612-RA | 870..1761 | 910..19 | 4460 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:44:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22800686..22801372 | 910..224 | 3435 | 100 | Minus |
2R | 25286936 | 2R | 22801480..22801689 | 228..19 | 1050 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:44:30 has no hits.
BO10901.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:52:31 Download gff for
BO10901.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
blw-PA | 765..1659 | 15..910 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:10:42 Download gff for
BO10901.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3612-PA | 765..1659 | 15..910 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:22:55 Download gff for
BO10901.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
blw-RA | 870..1771 | 6..910 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:58:53 Download gff for
BO10901.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
blw-RA | 870..1771 | 6..910 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:58:53 Download gff for
BO10901.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22800686..22801370 | 226..910 | 100 | -> | Minus |
2R | 22801483..22801699 | 6..225 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:22:55 Download gff for
BO10901.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18688191..18688875 | 226..910 | 100 | -> | Minus |
arm_2R | 18688988..18689204 | 6..225 | 97 | | Minus |
BO10901.5prime Sequence
899 bp (851 high quality bases) assembled on 2006-04-19
> BO10901.5prime
GAAGTTATCAGTCGACATGTCGATTTTTTCCGCCCGCCTGGCGTCCTCGG
TCGCCCGTAACCTGCCCAAGGCTGCCAACCAGGTCGCCTGCAAAGCCGCT
TATCCCGCCGCCAGTCTTGCTGCCCGCAAGCTCCATGTGGCCAGCACGCA
GCGTAGCGCTGAGATCTCCAACATCCTGGAGGAGCGCATCCTGGGCGTCG
CCCCCAAGGCTGATCTGGAGGAAACCGGCCGTGTGCTGAGCATCGGTGAC
GGTATCGCCCGTGTCTACGGTCTGAACAACATCCAGGCCGATGAGATGGT
GGAGTTCTCCTCCGGACTGAAGGGCATGGCCCTTAACTTGGAGCCCGACA
ACGTCGGTGTTGTGGTCTTCGGTAACGATAAGCTGATCAAGCAGGGCGAT
ATCGTCAAGCGTACCGGTGCCATCGTGGATGTGCCCGTCGGTGATGAGCT
GCTGGGTCGCGTCGTCGATGCCCTGGGAAATGCCATCGACGGCAAGGGTG
CCATCAACACCAAGGACCGTTTCCGTGTGGGAATCAAGGCCCCCGGCATC
ATCCCCCGTGTGTCCGTGCGCGAGCCCATGCAGACCGGTATCAAGGCCGT
CGACTCCCTGGTGCCCATCGGTCGTGGTCAGCGTGAGCTGATCATTGGCG
ATCGTCAGACTGGTAAGACCGCTCTGGCCATCGACACCATCATCAACCAG
AAGCGCTTCAACGAGGCCCAGGACGAGTCCAAGAAGCTGTACTGCATCTA
CGTCGCCATTGGCCAGAAGCGTTCCACCGTCGCCCAGATCGTGAAGCGTC
TGACCGACTCCGGCGCCATGGGCTACTCCGTGATCGTGTCGGCCACCGCC
TCCGACGCTGCTCCTCTGCAGTACTTGGCCCCCTACTCCGGATGCGCCA
BO10901.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:12:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3612-PA | 1659 | blw-RA | 1..883 | 17..899 | 4415 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 04:57:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
blw-RA | 2252 | CG3612-RA | 106..988 | 17..899 | 4415 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 04:56:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22799893..22800476 | 80..663 | 2920 | 100 | Plus |
2R | 25286936 | 2R | 22800568..22800804 | 663..899 | 1185 | 100 | Plus |
2R | 25286936 | 2R | 22799204..22799271 | 17..84 | 340 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 04:56:57 has no hits.
BO10901.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:52:32 Download gff for
BO10901.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
blw-PA | 1..882 | 17..898 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:10:43 Download gff for
BO10901.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3612-PA | 1..882 | 17..898 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:48:14 Download gff for
BO10901.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
blw-RA | 98..987 | 9..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 07:25:48 Download gff for
BO10901.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
blw-RA | 98..987 | 9..898 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 07:25:48 Download gff for
BO10901.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22799196..22799269 | 9..82 | 94 | -> | Plus |
2R | 22799896..22800476 | 83..663 | 100 | -> | Plus |
2R | 22800569..22800803 | 664..898 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:48:14 Download gff for
BO10901.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18686701..18686774 | 9..82 | 94 | -> | Plus |
arm_2R | 18687401..18687981 | 83..663 | 100 | -> | Plus |
arm_2R | 18688074..18688308 | 664..898 | 100 | | Plus |
BO10901.complete Sequence
1690 bp (1690 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631916
> BO10901.complete
GAAGTTATCAGTCGACATGTCGATTTTTTCCGCCCGCCTGGCGTCCTCGG
TCGCCCGTAACCTGCCCAAGGCTGCCAACCAGGTCGCCTGCAAAGCCGCT
TATCCCGCCGCCAGTCTTGCTGCCCGCAAGCTCCATGTGGCCAGCACGCA
GCGTAGCGCTGAGATCTCCAACATCCTGGAGGAGCGCATCCTGGGCGTCG
CCCCCAAGGCTGATCTGGAGGAAACCGGCCGTGTGCTGAGCATCGGTGAC
GGTATCGCCCGTGTCTACGGTCTGAACAACATCCAGGCCGATGAGATGGT
GGAGTTCTCCTCCGGACTGAAGGGCATGGCCCTTAACTTGGAGCCCGACA
ACGTCGGTGTTGTGGTCTTCGGTAACGATAAGCTGATCAAGCAGGGCGAT
ATCGTCAAGCGTACCGGTGCCATCGTGGATGTGCCCGTCGGTGATGAGCT
GCTGGGTCGCGTCGTCGATGCCCTGGGAAATGCCATCGACGGCAAGGGTG
CCATCAACACCAAGGACCGTTTCCGTGTGGGAATCAAGGCCCCCGGCATC
ATCCCCCGTGTGTCCGTGCGCGAGCCCATGCAGACCGGTATCAAGGCCGT
CGACTCCCTGGTGCCCATCGGTCGTGGTCAGCGTGAGCTGATCATTGGCG
ATCGTCAGACTGGTAAGACCGCTCTGGCCATCGACACCATCATCAACCAG
AAGCGCTTCAACGAGGCCCAGGACGAGTCCAAGAAGCTGTACTGCATCTA
CGTCGCCATTGGCCAGAAGCGTTCCACCGTCGCCCAGATCGTGAAGCGTC
TGACCGACTCCGGCGCCATGGGCTACTCCGTGATCGTGTCGGCCACCGCC
TCCGACGCTGCTCCTCTGCAGTACTTGGCCCCCTACTCCGGATGCGCCAT
GGGAGAGTACTTCCGCGACAAGGGCAAGCACGCCCTGATCATCTACGATG
ATTTGTCCAAGCAGGCTGTGGCCTACCGTCAGATGTCCCTGTTGCTGCGT
CGTCCCCCAGGTCGTGAGGCCTACCCCGGTGATGTGTTCTACCTGCATTC
GCGTCTGCTGGAGCGTGCCGCCAAGATGTCCCCCGCCATGGGAGGCGGTT
CCCTGACTGCTCTGCCCGTGATCGAGACCCAGGCTGGCGATGTGTCCGCC
TACATTCCAACCAACGTCATCTCGATTACCGACGGACAGATCTTCTTGGA
GACCGAGTTGTTCTACAAGGGTATCCGCCCTGCCATTAACGTCGGTCTGT
CCGTGTCCCGTGTGGGTTCCGCTGCCCAGACCAAGGCCATGAAGCAGGTG
GCCGGTTCCATGAAGCTGGAGTTGGCCCAGTACCGTGAGGTCGCTGCCTT
CGCCCAGTTCGGTTCCGATCTGGATGCCGCCACCCAGCAGCTGCTGAACC
GTGGTGTGCGCCTCACTGAGCTGCTCAAGCAGGGTCAGTACGTGCCCATG
GCCATTGAGGATCAGGTCGCCGTTATCTACTGCGGTGTGCGCGGTCATCT
GGACAAGATGGATCCCGCCAAGATCACCAAGTTCGAGAAGGAGTTCTTGC
AGCACATCAAGACCTCCGAGCAGGCTCTGCTCGACACCATCGCCAAGGAC
GGTGCTATCTCGGAGGCGTCCGATGCCAAGCTGAAGGACATTGTTGCCAA
GTTCATGTCCACCTTCCAGGGTGCAAGCTTTCTAGACCAT
BO10901.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:44:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
blw-RA | 1659 | CG3612-PA | 1..1656 | 17..1672 | 8280 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:44:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
blw-RA | 2252 | CG3612-RA | 106..1761 | 17..1672 | 8280 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:44:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22800568..22801372 | 663..1467 | 4025 | 100 | Plus |
2R | 25286936 | 2R | 22799893..22800476 | 80..663 | 2920 | 100 | Plus |
2R | 25286936 | 2R | 22801480..22801689 | 1463..1672 | 1050 | 100 | Plus |
2R | 25286936 | 2R | 22799204..22799271 | 17..84 | 340 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:44:35 has no hits.
BO10901.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:48:55 Download gff for
BO10901.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
blw-RA | 1..1659 | 17..1676 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:20:17 Download gff for
BO10901.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
blw-RA | 143..1816 | 9..1685 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:20:44 Download gff for
BO10901.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
blw-RA | 106..1761 | 17..1674 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:48:55 Download gff for
BO10901.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
blw-RA | 143..1816 | 9..1685 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:29:41 Download gff for
BO10901.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
blw-RA | 106..1761 | 17..1674 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:29:41 Download gff for
BO10901.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22799204..22799269 | 17..82 | 100 | -> | Plus |
2R | 22799896..22800476 | 83..663 | 100 | -> | Plus |
2R | 22800569..22801370 | 664..1465 | 100 | -> | Plus |
2R | 22801483..22801689 | 1466..1674 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:20:44 Download gff for
BO10901.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18686709..18686774 | 17..82 | 100 | -> | Plus |
arm_2R | 18687401..18687981 | 83..663 | 100 | -> | Plus |
arm_2R | 18688074..18688875 | 664..1465 | 100 | -> | Plus |
arm_2R | 18688988..18689194 | 1466..1674 | 99 | | Plus |
BO10901.pep Sequence
Translation from 16 to 1690
> BO10901.pep
MSIFSARLASSVARNLPKAANQVACKAAYPAASLAARKLHVASTQRSAEI
SNILEERILGVAPKADLEETGRVLSIGDGIARVYGLNNIQADEMVEFSSG
LKGMALNLEPDNVGVVVFGNDKLIKQGDIVKRTGAIVDVPVGDELLGRVV
DALGNAIDGKGAINTKDRFRVGIKAPGIIPRVSVREPMQTGIKAVDSLVP
IGRGQRELIIGDRQTGKTALAIDTIINQKRFNEAQDESKKLYCIYVAIGQ
KRSTVAQIVKRLTDSGAMGYSVIVSATASDAAPLQYLAPYSGCAMGEYFR
DKGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLER
AAKMSPAMGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFY
KGIRPAINVGLSVSRVGSAAQTKAMKQVAGSMKLELAQYREVAAFAQFGS
DLDAATQQLLNRGVRLTELLKQGQYVPMAIEDQVAVIYCGVRGHLDKMDP
AKITKFEKEFLQHIKTSEQALLDTIAKDGAISEASDAKLKDIVAKFMSTF
QGASFLDH
BO10901.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:31:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
blw-PA | 552 | CG3612-PA | 1..552 | 1..552 | 2737 | 100 | Plus |
Vha55-PC | 490 | CG17369-PC | 63..390 | 103..425 | 265 | 25.5 | Plus |
Vha55-PA | 490 | CG17369-PA | 63..390 | 103..425 | 265 | 25.5 | Plus |
Vha55-PB | 490 | CG17369-PB | 63..390 | 103..425 | 265 | 25.5 | Plus |
ATPsyn-beta-PC | 511 | CG11154-PC | 1..390 | 3..416 | 252 | 22.8 | Plus |