Clone Sequence Records
BO10909.3prime Sequence
975 bp (890 high quality bases) assembled on 2006-04-19
> BO10909.3prime
ATGGTCTAGAAAGCTTGCTAACAATTCATATTGACGAAGGTGCATCCTTT
GAATAATGTCTCTGCAATCATTAAACACACGTTTAATGTTTTCTGTGTCA
ACGGCGCATGTGAAATGTGGATAGCAGTAGTGTTTTCCGTCTCCGCTAGC
GGTAGATATACGCAGAAACTCGTCTCGTATGAAATATTTTGCTCGTATTA
CTTCTGGGTCATCATTGGATTCCATTATTGCGTCACCTGTGTCGATTGGC
GTTTGGTATTTGTTAAACTCGGAGAAATATTCCGACAATTTACTTTTTCC
AGCCTTAATTTTCTCTGCTAACAAATCTTGCTTATTTAAAAATAGTATAA
TAGAAATCGTGCGAAGCCATCTGTTGTTCCAAATACTCTTGAACAAATCC
AAAGATTCTCGAAGTCGGTTCTGGGTGGGATCTTCCCGCAAAACCATGTT
ATAACTTGAGCACGCAGTTACGAATATGATAGCAGTTACATCATTGAAAC
ACTGAATCCATTTCCTACGCTCGTCCCGCTGGCCACCGACATCGAACATG
TGAAAGTTTACTTTGTCCACTTGAAATCTTGTTTCAAATATTCCAGAAGT
CAAAACACGGCACCGAAGAATATCCTGCTCATTAGGGGTGTAGTTTGGAT
TCTTGATTGTGCTCACTCGGTCCAGGAAGTATTTCGCACAATCGATTAAT
TGATACTCATTCGACCTCTCATAGGTTTGAAGAACGCCCTTGTCTTTCCA
TAGTTCTTCTGTATGTTCATAAAATTCANGAGGATAATTAAAGTCCGGAC
TAGATGCATAATCCTGAATGTACTCCACTCTGGGTTCATTTTCCTTCTTT
TCTAAAGCTACAGGTGGATTAAGTGTGCTCATGGCTCCTGTAATAGTCAA
GATAGCGTCTCGAATATTCTTTTAATATCATCAATTTTCTGTTTCTTTTC
CCAGTCAGAAAATCCGTCGACATGC
BO10909.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:12:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2835-PB | 1158 | G-salpha60A-RB | 251..1155 | 923..19 | 4506 | 99.8 | Minus |
CG2835-PC | 1149 | G-salpha60A-RC | 251..928 | 923..246 | 3371 | 99.8 | Minus |
CG2835-PA | 1149 | G-salpha60A-RA | 251..928 | 923..246 | 3371 | 99.8 | Minus |
CG2835-PC | 1149 | G-salpha60A-RC | 929..1146 | 236..19 | 1090 | 100 | Minus |
CG2835-PA | 1149 | G-salpha60A-RA | 929..1146 | 236..19 | 1090 | 100 | Minus |
CG2835-PB | 1158 | G-salpha60A-RB | 198..253 | 975..920 | 255 | 98.2 | Minus |
CG2835-PC | 1149 | G-salpha60A-RC | 198..253 | 975..920 | 255 | 98.2 | Minus |
CG2835-PA | 1149 | G-salpha60A-RA | 198..253 | 975..920 | 255 | 98.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:38:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Galphas-RD | 1646 | CG2835-RD | 497..1454 | 975..19 | 4739 | 99.7 | Minus |
Galphas-RB | 1859 | CG2835-RB | 710..1667 | 975..19 | 4739 | 99.7 | Minus |
Galphas-RE | 1826 | CG2835-RE | 686..1634 | 975..19 | 4594 | 98.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:38:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23945898..23946077 | 550..371 | 900 | 100 | Minus |
2R | 25286936 | 2R | 23946600..23946744 | 163..19 | 725 | 100 | Minus |
2R | 25286936 | 2R | 23945696..23945824 | 679..551 | 645 | 100 | Minus |
2R | 25286936 | 2R | 23946134..23946261 | 373..246 | 640 | 100 | Minus |
2R | 25286936 | 2R | 23944960..23945080 | 800..680 | 594 | 99.2 | Minus |
2R | 25286936 | 2R | 23944806..23944905 | 898..799 | 500 | 100 | Minus |
2R | 25286936 | 2R | 23946438..23946520 | 245..163 | 415 | 100 | Minus |
2R | 25286936 | 2R | 23944662..23944740 | 975..898 | 330 | 97.5 | Minus |
Blast to na_te.dros performed 2015-02-10 22:38:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
roo | 9092 | roo DM_ROO 9092bp | 4469..4532 | 952..889 | 140 | 68.8 | Minus |
BO10909.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:52:47 Download gff for
BO10909.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2835-PB | 198..1158 | 18..975 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:11:04 Download gff for
BO10909.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2835-PB | 198..1158 | 18..975 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:49:11 Download gff for
BO10909.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Galphas-RB | 710..1673 | 11..975 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:04:05 Download gff for
BO10909.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Galphas-RB | 710..1673 | 11..975 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:04:05 Download gff for
BO10909.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23944662..23944740 | 898..975 | 97 | -> | Minus |
2R | 23944807..23944903 | 801..897 | 100 | -> | Minus |
2R | 23944960..23945080 | 680..800 | 99 | -> | Minus |
2R | 23945696..23945824 | 551..679 | 100 | -> | Minus |
2R | 23945898..23946077 | 371..550 | 100 | -> | Minus |
2R | 23946137..23946261 | 246..370 | 100 | -> | Minus |
2R | 23946438..23946520 | 163..245 | 100 | -> | Minus |
2R | 23946601..23946750 | 11..162 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:49:11 Download gff for
BO10909.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19834124..19834273 | 11..162 | 97 | | Minus |
arm_2R | 19832185..19832263 | 898..975 | 97 | -> | Minus |
arm_2R | 19832330..19832426 | 801..897 | 100 | -> | Minus |
arm_2R | 19832483..19832603 | 680..800 | 99 | -> | Minus |
arm_2R | 19833219..19833347 | 551..679 | 100 | -> | Minus |
arm_2R | 19833421..19833600 | 371..550 | 100 | -> | Minus |
arm_2R | 19833660..19833784 | 246..370 | 100 | -> | Minus |
arm_2R | 19833961..19834043 | 163..245 | 100 | -> | Minus |
BO10909.5prime Sequence
949 bp (811 high quality bases) assembled on 2006-04-19
> BO10909.5prime
GAAGTTATCAGTCGACATGGGTTGCTTTGGGTCGCCCACCTCCAAGCAGT
CGGACGTGAACTCGGAGGACTCGAAGAGCCAGAAGCGCCGGAGCGATGCA
ATATCTAGACAGTTGCAGAAGGACAAACAGCTCTACAGGGCCACACACAG
GCTGCTCCTCCTGGGGGCGGGCGAGTCCGGCAAATCAACCATAGTCAAGC
AAATGCGAATATTGCATGTCGACGGATTTTCTGACTCGGAAAAGAAACAG
AAAATTGATGATATTAAAAAGAATATTCGAGACGCTATCTTGACTATTAC
AGGAGCCATGAGCACACTTAATCCACCTGTAGCTTTAGAAAAGAAGGAAA
ATGAACCCAGAGTGGAGTACATTCAGGATTATGCATCTAGTCCGGACTTT
AATTATCCTCCTGAATTTTATGAACATACAGAAGAACTATGGAAAGACAA
GGGCGTTCTTCAAACCTATGAGAGGTCGAATGAGTATCAATTAATCGATT
GTGCGAAATACTTCCTGGACCGAGTGAGCACAATCAAGAATCCAAACTAC
ACCCCTAATGAGCAGGATATTCTTCGGTGCCGTGTTTTGACTTCTGGAAT
ATTTGAAACAAGATTTCAAGTGGACAAAGTAAACTTTCACATGTTCGATG
TCGGTGGCCAGCGGGACGAGCGTAGGAAATGGATTCAGTGTTTCAATGAT
GTAACTGCTATCATATTCGTAACTGCGTGCTCAAGTTATAACATGGTTTT
GCGGGAAGATCCCACCCAGAACCGACTTCGAGAATCTTTGGATTTGTTCA
AGAGTATTTGGAACAACAGATGGCTTCGCACGATTTCTATTATACTATTT
TTAAATAAGCAAGATTTGTTAGCAGAGAAAATTAAGGTGGGAAAAGTAAA
TGTCGGAATATTTCTCGGAGTTTACCAATACCAACGCCAATCGACACGG
BO10909.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:12:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2835-PC | 1149 | G-salpha60A-RC | 1..871 | 17..887 | 4355 | 100 | Plus |
CG2835-PB | 1158 | G-salpha60A-RB | 1..871 | 17..887 | 4355 | 100 | Plus |
CG2835-PA | 1149 | G-salpha60A-RA | 1..871 | 17..887 | 4355 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:50:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Galphas-RD | 1646 | CG2835-RD | 300..1234 | 17..947 | 4530 | 99.3 | Plus |
Galphas-RB | 1859 | CG2835-RB | 513..1447 | 17..947 | 4530 | 99.3 | Plus |
Galphas-RE | 1826 | CG2835-RE | 489..1416 | 17..940 | 4495 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:50:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23944465..23944740 | 17..292 | 1380 | 100 | Plus |
2R | 25286936 | 2R | 23945898..23946077 | 640..819 | 900 | 100 | Plus |
2R | 25286936 | 2R | 23945696..23945824 | 511..639 | 645 | 100 | Plus |
2R | 25286936 | 2R | 23944960..23945080 | 390..510 | 605 | 100 | Plus |
2R | 25286936 | 2R | 23944806..23944905 | 292..391 | 500 | 100 | Plus |
2R | 25286936 | 2R | 23946134..23946247 | 817..928 | 425 | 95.6 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:50:43 has no hits.
BO10909.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:52:48 Download gff for
BO10909.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2835-PB | 1..937 | 17..949 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:11:06 Download gff for
BO10909.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2835-PA | 1..933 | 17..945 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:52:26 Download gff for
BO10909.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Galphas-RB | 511..1449 | 13..949 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:47:37 Download gff for
BO10909.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Galphas-RB | 511..1449 | 13..949 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:47:37 Download gff for
BO10909.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23945696..23945824 | 511..639 | 100 | -> | Plus |
2R | 23945898..23946077 | 640..819 | 100 | -> | Plus |
2R | 23944463..23944740 | 13..292 | 99 | -> | Plus |
2R | 23944807..23944903 | 293..389 | 100 | -> | Plus |
2R | 23944960..23945080 | 390..510 | 100 | -> | Plus |
2R | 23946137..23946261 | 820..940 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:52:26 Download gff for
BO10909.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19831986..19832263 | 13..292 | 99 | -> | Plus |
arm_2R | 19832330..19832426 | 293..389 | 100 | -> | Plus |
arm_2R | 19832483..19832603 | 390..510 | 100 | -> | Plus |
arm_2R | 19833219..19833347 | 511..639 | 100 | -> | Plus |
arm_2R | 19833421..19833600 | 640..819 | 100 | -> | Plus |
arm_2R | 19833660..19833784 | 820..940 | 94 | | Plus |
BO10909.complete Sequence
1189 bp (1189 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631920
> BO10909.complete
GAAGTTATCAGTCGACATGGGTTGCTTTGGGTCGCCCACCTCCAAGCAGT
CGGACGTGAACTCGGAGGACTCGAAGAGCCAGAAGCGCCGGAGCGATGCA
ATATCTAGACAGTTGCAGAAGGACAAACAGCTCTACAGGGCCACACACAG
GCTGCTCCTCCTGGGGGCGGGCGAGTCCGGCAAATCAACCATAGTCAAGC
AAATGCGAATATTGCATGTCGACGGATTTTCTGACTCGGAAAAGAAACAG
AAAATTGATGATATTAAAAAGAATATTCGAGACGCTATCTTGACTATTAC
AGGAGCCATGAGCACACTTAATCCACCTGTAGCTTTAGAAAAGAAGGAAA
ATGAACCCAGAGTGGAGTACATTCAGGATTATGCATCTAGTCCGGACTTT
AATTATCCTCCTGAATTTTATGAACATACAGAAGAACTATGGAAAGACAA
GGGCGTTCTTCAAACCTATGAGAGGTCGAATGAGTATCAATTAATCGATT
GTGCGAAATACTTCCTGGACCGAGTGAGCACAATCAAGAATCCAAACTAC
ACCCCTAATGAGCAGGATATTCTTCGGTGCCGTGTTTTGACTTCTGGAAT
ATTTGAAACAAGATTTCAAGTGGACAAAGTAAACTTTCACATGTTCGATG
TCGGTGGCCAGCGGGACGAGCGTAGGAAATGGATTCAGTGTTTCAATGAT
GTAACTGCTATCATATTCGTAACTGCGTGCTCAAGTTATAACATGGTTTT
GCGGGAAGATCCCACCCAGAACCGACTTCGAGAATCTTTGGATTTGTTCA
AGAGTATTTGGAACAACAGATGGCTTCGCACGATTTCTATTATACTATTT
TTAAATAAGCAAGATTTGTTAGCAGAGAAAATTAAGGCTGGAAAAAGTAA
ATTGTCGGAATATTTCTCCGAGTTTAACAAATACCAAACGCCAATCGACA
CAGGTGACGCAATAATGGAATCCAATGATGACCCAGAAGTAATACGAGCA
AAATATTTCATACGAGACGAGTTTCTGCGTATATCTACCGCTAGCGGAGA
CGGAAAACACTACTGCTATCCACATTTCACATGCGCCGTTGACACAGAAA
ACATTAAACGTGTGTTTAATGATTGCAGAGACATTATTCAAAGGATGCAC
CTTCGTCAATATGAATTGTTAGCAAGCTTTCTAGACCAT
BO10909.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:49:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Galphas-RD | 1158 | CG2835-PD | 1..1155 | 17..1171 | 5775 | 100 | Plus |
Galphas-RB | 1158 | CG2835-PB | 1..1155 | 17..1171 | 5775 | 100 | Plus |
Galphas-RE | 1149 | CG2835-PE | 1..1146 | 17..1171 | 5605 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:49:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Galphas-RD | 1646 | CG2835-RD | 300..1454 | 17..1171 | 5775 | 100 | Plus |
Galphas-RB | 1859 | CG2835-RB | 513..1667 | 17..1171 | 5775 | 100 | Plus |
Galphas-RE | 1826 | CG2835-RE | 489..1634 | 17..1171 | 5605 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:49:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23944465..23944740 | 17..292 | 1380 | 100 | Plus |
2R | 25286936 | 2R | 23945898..23946077 | 640..819 | 900 | 100 | Plus |
2R | 25286936 | 2R | 23946600..23946744 | 1027..1171 | 725 | 100 | Plus |
2R | 25286936 | 2R | 23945696..23945824 | 511..639 | 645 | 100 | Plus |
2R | 25286936 | 2R | 23946134..23946261 | 817..944 | 640 | 100 | Plus |
2R | 25286936 | 2R | 23944960..23945080 | 390..510 | 605 | 100 | Plus |
2R | 25286936 | 2R | 23944806..23944905 | 292..391 | 500 | 100 | Plus |
2R | 25286936 | 2R | 23946438..23946520 | 945..1027 | 415 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:49:57 has no hits.
BO10909.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:48:43 Download gff for
BO10909.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
G-salpha60A-RB | 1..1158 | 17..1172 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:20:00 Download gff for
BO10909.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
G-salpha60A-RB | 508..1670 | 13..1179 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:35:35 Download gff for
BO10909.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Galphas-RB | 513..1667 | 17..1173 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:48:43 Download gff for
BO10909.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
G-salpha60A-RB | 508..1670 | 13..1179 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:10:58 Download gff for
BO10909.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Galphas-RB | 513..1667 | 17..1173 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:10:58 Download gff for
BO10909.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23944465..23944740 | 17..292 | 100 | -> | Plus |
2R | 23944807..23944903 | 293..389 | 100 | -> | Plus |
2R | 23944960..23945080 | 390..510 | 100 | -> | Plus |
2R | 23945696..23945824 | 511..639 | 100 | -> | Plus |
2R | 23945898..23946077 | 640..819 | 100 | -> | Plus |
2R | 23946137..23946261 | 820..944 | 100 | -> | Plus |
2R | 23946438..23946520 | 945..1027 | 100 | -> | Plus |
2R | 23946601..23946744 | 1028..1173 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:35:35 Download gff for
BO10909.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19831988..19832263 | 17..292 | 100 | -> | Plus |
arm_2R | 19832330..19832426 | 293..389 | 100 | -> | Plus |
arm_2R | 19832483..19832603 | 390..510 | 100 | -> | Plus |
arm_2R | 19833219..19833347 | 511..639 | 100 | -> | Plus |
arm_2R | 19833421..19833600 | 640..819 | 100 | -> | Plus |
arm_2R | 19833660..19833784 | 820..944 | 100 | -> | Plus |
arm_2R | 19833961..19834043 | 945..1027 | 100 | -> | Plus |
arm_2R | 19834124..19834267 | 1028..1173 | 98 | | Plus |
BO10909.pep Sequence
Translation from 16 to 1189
> BO10909.pep
MGCFGSPTSKQSDVNSEDSKSQKRRSDAISRQLQKDKQLYRATHRLLLLG
AGESGKSTIVKQMRILHVDGFSDSEKKQKIDDIKKNIRDAILTITGAMST
LNPPVALEKKENEPRVEYIQDYASSPDFNYPPEFYEHTEELWKDKGVLQT
YERSNEYQLIDCAKYFLDRVSTIKNPNYTPNEQDILRCRVLTSGIFETRF
QVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPT
QNRLRESLDLFKSIWNNRWLRTISIILFLNKQDLLAEKIKAGKSKLSEYF
SEFNKYQTPIDTGDAIMESNDDPEVIRAKYFIRDEFLRISTASGDGKHYC
YPHFTCAVDTENIKRVFNDCRDIIQRMHLRQYELLASFLDH
BO10909.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:49:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Galphas-PD | 385 | CG2835-PD | 1..385 | 1..385 | 2024 | 100 | Plus |
Galphas-PB | 385 | CG2835-PB | 1..385 | 1..385 | 2024 | 100 | Plus |
Galphas-PE | 382 | CG2835-PE | 1..382 | 1..385 | 1989 | 99 | Plus |
Galphas-PA | 382 | CG2835-PA | 1..382 | 1..385 | 1989 | 99 | Plus |
Galphas-PC | 382 | CG2835-PC | 1..382 | 1..385 | 1989 | 99 | Plus |