Clone BO10909 Report

Search the DGRC for BO10909

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:109
Well:9
Vector:pDNR-Dual
Associated Gene/TranscriptGalphas-RB
Protein status:BO10909.pep: validated full length
Sequenced Size:1189

Clone Sequence Records

BO10909.3prime Sequence

975 bp (890 high quality bases) assembled on 2006-04-19

> BO10909.3prime
ATGGTCTAGAAAGCTTGCTAACAATTCATATTGACGAAGGTGCATCCTTT
GAATAATGTCTCTGCAATCATTAAACACACGTTTAATGTTTTCTGTGTCA
ACGGCGCATGTGAAATGTGGATAGCAGTAGTGTTTTCCGTCTCCGCTAGC
GGTAGATATACGCAGAAACTCGTCTCGTATGAAATATTTTGCTCGTATTA
CTTCTGGGTCATCATTGGATTCCATTATTGCGTCACCTGTGTCGATTGGC
GTTTGGTATTTGTTAAACTCGGAGAAATATTCCGACAATTTACTTTTTCC
AGCCTTAATTTTCTCTGCTAACAAATCTTGCTTATTTAAAAATAGTATAA
TAGAAATCGTGCGAAGCCATCTGTTGTTCCAAATACTCTTGAACAAATCC
AAAGATTCTCGAAGTCGGTTCTGGGTGGGATCTTCCCGCAAAACCATGTT
ATAACTTGAGCACGCAGTTACGAATATGATAGCAGTTACATCATTGAAAC
ACTGAATCCATTTCCTACGCTCGTCCCGCTGGCCACCGACATCGAACATG
TGAAAGTTTACTTTGTCCACTTGAAATCTTGTTTCAAATATTCCAGAAGT
CAAAACACGGCACCGAAGAATATCCTGCTCATTAGGGGTGTAGTTTGGAT
TCTTGATTGTGCTCACTCGGTCCAGGAAGTATTTCGCACAATCGATTAAT
TGATACTCATTCGACCTCTCATAGGTTTGAAGAACGCCCTTGTCTTTCCA
TAGTTCTTCTGTATGTTCATAAAATTCANGAGGATAATTAAAGTCCGGAC
TAGATGCATAATCCTGAATGTACTCCACTCTGGGTTCATTTTCCTTCTTT
TCTAAAGCTACAGGTGGATTAAGTGTGCTCATGGCTCCTGTAATAGTCAA
GATAGCGTCTCGAATATTCTTTTAATATCATCAATTTTCTGTTTCTTTTC
CCAGTCAGAAAATCCGTCGACATGC

BO10909.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:12:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG2835-PB 1158 G-salpha60A-RB 251..1155 923..19 4506 99.8 Minus
CG2835-PC 1149 G-salpha60A-RC 251..928 923..246 3371 99.8 Minus
CG2835-PA 1149 G-salpha60A-RA 251..928 923..246 3371 99.8 Minus
CG2835-PC 1149 G-salpha60A-RC 929..1146 236..19 1090 100 Minus
CG2835-PA 1149 G-salpha60A-RA 929..1146 236..19 1090 100 Minus
CG2835-PB 1158 G-salpha60A-RB 198..253 975..920 255 98.2 Minus
CG2835-PC 1149 G-salpha60A-RC 198..253 975..920 255 98.2 Minus
CG2835-PA 1149 G-salpha60A-RA 198..253 975..920 255 98.2 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:38:12
Subject Length Description Subject Range Query Range Score Percent Strand
Galphas-RD 1646 CG2835-RD 497..1454 975..19 4739 99.7 Minus
Galphas-RB 1859 CG2835-RB 710..1667 975..19 4739 99.7 Minus
Galphas-RE 1826 CG2835-RE 686..1634 975..19 4594 98.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:38:06
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23945898..23946077 550..371 900 100 Minus
2R 25286936 2R 23946600..23946744 163..19 725 100 Minus
2R 25286936 2R 23945696..23945824 679..551 645 100 Minus
2R 25286936 2R 23946134..23946261 373..246 640 100 Minus
2R 25286936 2R 23944960..23945080 800..680 594 99.2 Minus
2R 25286936 2R 23944806..23944905 898..799 500 100 Minus
2R 25286936 2R 23946438..23946520 245..163 415 100 Minus
2R 25286936 2R 23944662..23944740 975..898 330 97.5 Minus
Blast to na_te.dros performed 2015-02-10 22:38:09
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 4469..4532 952..889 140 68.8 Minus

BO10909.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:52:47 Download gff for BO10909.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2835-PB 198..1158 18..975 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:11:04 Download gff for BO10909.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2835-PB 198..1158 18..975 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:49:11 Download gff for BO10909.3prime
Subject Subject Range Query Range Percent Splice Strand
Galphas-RB 710..1673 11..975 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:04:05 Download gff for BO10909.3prime
Subject Subject Range Query Range Percent Splice Strand
Galphas-RB 710..1673 11..975 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:04:05 Download gff for BO10909.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 23944662..23944740 898..975 97 -> Minus
2R 23944807..23944903 801..897 100 -> Minus
2R 23944960..23945080 680..800 99 -> Minus
2R 23945696..23945824 551..679 100 -> Minus
2R 23945898..23946077 371..550 100 -> Minus
2R 23946137..23946261 246..370 100 -> Minus
2R 23946438..23946520 163..245 100 -> Minus
2R 23946601..23946750 11..162 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:49:11 Download gff for BO10909.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19834124..19834273 11..162 97   Minus
arm_2R 19832185..19832263 898..975 97 -> Minus
arm_2R 19832330..19832426 801..897 100 -> Minus
arm_2R 19832483..19832603 680..800 99 -> Minus
arm_2R 19833219..19833347 551..679 100 -> Minus
arm_2R 19833421..19833600 371..550 100 -> Minus
arm_2R 19833660..19833784 246..370 100 -> Minus
arm_2R 19833961..19834043 163..245 100 -> Minus

BO10909.5prime Sequence

949 bp (811 high quality bases) assembled on 2006-04-19

> BO10909.5prime
GAAGTTATCAGTCGACATGGGTTGCTTTGGGTCGCCCACCTCCAAGCAGT
CGGACGTGAACTCGGAGGACTCGAAGAGCCAGAAGCGCCGGAGCGATGCA
ATATCTAGACAGTTGCAGAAGGACAAACAGCTCTACAGGGCCACACACAG
GCTGCTCCTCCTGGGGGCGGGCGAGTCCGGCAAATCAACCATAGTCAAGC
AAATGCGAATATTGCATGTCGACGGATTTTCTGACTCGGAAAAGAAACAG
AAAATTGATGATATTAAAAAGAATATTCGAGACGCTATCTTGACTATTAC
AGGAGCCATGAGCACACTTAATCCACCTGTAGCTTTAGAAAAGAAGGAAA
ATGAACCCAGAGTGGAGTACATTCAGGATTATGCATCTAGTCCGGACTTT
AATTATCCTCCTGAATTTTATGAACATACAGAAGAACTATGGAAAGACAA
GGGCGTTCTTCAAACCTATGAGAGGTCGAATGAGTATCAATTAATCGATT
GTGCGAAATACTTCCTGGACCGAGTGAGCACAATCAAGAATCCAAACTAC
ACCCCTAATGAGCAGGATATTCTTCGGTGCCGTGTTTTGACTTCTGGAAT
ATTTGAAACAAGATTTCAAGTGGACAAAGTAAACTTTCACATGTTCGATG
TCGGTGGCCAGCGGGACGAGCGTAGGAAATGGATTCAGTGTTTCAATGAT
GTAACTGCTATCATATTCGTAACTGCGTGCTCAAGTTATAACATGGTTTT
GCGGGAAGATCCCACCCAGAACCGACTTCGAGAATCTTTGGATTTGTTCA
AGAGTATTTGGAACAACAGATGGCTTCGCACGATTTCTATTATACTATTT
TTAAATAAGCAAGATTTGTTAGCAGAGAAAATTAAGGTGGGAAAAGTAAA
TGTCGGAATATTTCTCGGAGTTTACCAATACCAACGCCAATCGACACGG

BO10909.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:12:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG2835-PC 1149 G-salpha60A-RC 1..871 17..887 4355 100 Plus
CG2835-PB 1158 G-salpha60A-RB 1..871 17..887 4355 100 Plus
CG2835-PA 1149 G-salpha60A-RA 1..871 17..887 4355 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:50:47
Subject Length Description Subject Range Query Range Score Percent Strand
Galphas-RD 1646 CG2835-RD 300..1234 17..947 4530 99.3 Plus
Galphas-RB 1859 CG2835-RB 513..1447 17..947 4530 99.3 Plus
Galphas-RE 1826 CG2835-RE 489..1416 17..940 4495 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:50:40
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23944465..23944740 17..292 1380 100 Plus
2R 25286936 2R 23945898..23946077 640..819 900 100 Plus
2R 25286936 2R 23945696..23945824 511..639 645 100 Plus
2R 25286936 2R 23944960..23945080 390..510 605 100 Plus
2R 25286936 2R 23944806..23944905 292..391 500 100 Plus
2R 25286936 2R 23946134..23946247 817..928 425 95.6 Plus
Blast to na_te.dros performed on 2015-02-10 21:50:43 has no hits.

BO10909.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:52:48 Download gff for BO10909.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2835-PB 1..937 17..949 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:11:06 Download gff for BO10909.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2835-PA 1..933 17..945 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:52:26 Download gff for BO10909.5prime
Subject Subject Range Query Range Percent Splice Strand
Galphas-RB 511..1449 13..949 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:47:37 Download gff for BO10909.5prime
Subject Subject Range Query Range Percent Splice Strand
Galphas-RB 511..1449 13..949 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:47:37 Download gff for BO10909.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 23945696..23945824 511..639 100 -> Plus
2R 23945898..23946077 640..819 100 -> Plus
2R 23944463..23944740 13..292 99 -> Plus
2R 23944807..23944903 293..389 100 -> Plus
2R 23944960..23945080 390..510 100 -> Plus
2R 23946137..23946261 820..940 94   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:52:26 Download gff for BO10909.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19831986..19832263 13..292 99 -> Plus
arm_2R 19832330..19832426 293..389 100 -> Plus
arm_2R 19832483..19832603 390..510 100 -> Plus
arm_2R 19833219..19833347 511..639 100 -> Plus
arm_2R 19833421..19833600 640..819 100 -> Plus
arm_2R 19833660..19833784 820..940 94   Plus

BO10909.complete Sequence

1189 bp (1189 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ631920

> BO10909.complete
GAAGTTATCAGTCGACATGGGTTGCTTTGGGTCGCCCACCTCCAAGCAGT
CGGACGTGAACTCGGAGGACTCGAAGAGCCAGAAGCGCCGGAGCGATGCA
ATATCTAGACAGTTGCAGAAGGACAAACAGCTCTACAGGGCCACACACAG
GCTGCTCCTCCTGGGGGCGGGCGAGTCCGGCAAATCAACCATAGTCAAGC
AAATGCGAATATTGCATGTCGACGGATTTTCTGACTCGGAAAAGAAACAG
AAAATTGATGATATTAAAAAGAATATTCGAGACGCTATCTTGACTATTAC
AGGAGCCATGAGCACACTTAATCCACCTGTAGCTTTAGAAAAGAAGGAAA
ATGAACCCAGAGTGGAGTACATTCAGGATTATGCATCTAGTCCGGACTTT
AATTATCCTCCTGAATTTTATGAACATACAGAAGAACTATGGAAAGACAA
GGGCGTTCTTCAAACCTATGAGAGGTCGAATGAGTATCAATTAATCGATT
GTGCGAAATACTTCCTGGACCGAGTGAGCACAATCAAGAATCCAAACTAC
ACCCCTAATGAGCAGGATATTCTTCGGTGCCGTGTTTTGACTTCTGGAAT
ATTTGAAACAAGATTTCAAGTGGACAAAGTAAACTTTCACATGTTCGATG
TCGGTGGCCAGCGGGACGAGCGTAGGAAATGGATTCAGTGTTTCAATGAT
GTAACTGCTATCATATTCGTAACTGCGTGCTCAAGTTATAACATGGTTTT
GCGGGAAGATCCCACCCAGAACCGACTTCGAGAATCTTTGGATTTGTTCA
AGAGTATTTGGAACAACAGATGGCTTCGCACGATTTCTATTATACTATTT
TTAAATAAGCAAGATTTGTTAGCAGAGAAAATTAAGGCTGGAAAAAGTAA
ATTGTCGGAATATTTCTCCGAGTTTAACAAATACCAAACGCCAATCGACA
CAGGTGACGCAATAATGGAATCCAATGATGACCCAGAAGTAATACGAGCA
AAATATTTCATACGAGACGAGTTTCTGCGTATATCTACCGCTAGCGGAGA
CGGAAAACACTACTGCTATCCACATTTCACATGCGCCGTTGACACAGAAA
ACATTAAACGTGTGTTTAATGATTGCAGAGACATTATTCAAAGGATGCAC
CTTCGTCAATATGAATTGTTAGCAAGCTTTCTAGACCAT

BO10909.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:49:57
Subject Length Description Subject Range Query Range Score Percent Strand
Galphas-RD 1158 CG2835-PD 1..1155 17..1171 5775 100 Plus
Galphas-RB 1158 CG2835-PB 1..1155 17..1171 5775 100 Plus
Galphas-RE 1149 CG2835-PE 1..1146 17..1171 5605 99.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:49:58
Subject Length Description Subject Range Query Range Score Percent Strand
Galphas-RD 1646 CG2835-RD 300..1454 17..1171 5775 100 Plus
Galphas-RB 1859 CG2835-RB 513..1667 17..1171 5775 100 Plus
Galphas-RE 1826 CG2835-RE 489..1634 17..1171 5605 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:49:56
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23944465..23944740 17..292 1380 100 Plus
2R 25286936 2R 23945898..23946077 640..819 900 100 Plus
2R 25286936 2R 23946600..23946744 1027..1171 725 100 Plus
2R 25286936 2R 23945696..23945824 511..639 645 100 Plus
2R 25286936 2R 23946134..23946261 817..944 640 100 Plus
2R 25286936 2R 23944960..23945080 390..510 605 100 Plus
2R 25286936 2R 23944806..23944905 292..391 500 100 Plus
2R 25286936 2R 23946438..23946520 945..1027 415 100 Plus
Blast to na_te.dros performed on 2014-11-27 00:49:57 has no hits.

BO10909.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:48:43 Download gff for BO10909.complete
Subject Subject Range Query Range Percent Splice Strand
G-salpha60A-RB 1..1158 17..1172 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:20:00 Download gff for BO10909.complete
Subject Subject Range Query Range Percent Splice Strand
G-salpha60A-RB 508..1670 13..1179 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:35:35 Download gff for BO10909.complete
Subject Subject Range Query Range Percent Splice Strand
Galphas-RB 513..1667 17..1173 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:48:43 Download gff for BO10909.complete
Subject Subject Range Query Range Percent Splice Strand
G-salpha60A-RB 508..1670 13..1179 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:10:58 Download gff for BO10909.complete
Subject Subject Range Query Range Percent Splice Strand
Galphas-RB 513..1667 17..1173 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:10:58 Download gff for BO10909.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23944465..23944740 17..292 100 -> Plus
2R 23944807..23944903 293..389 100 -> Plus
2R 23944960..23945080 390..510 100 -> Plus
2R 23945696..23945824 511..639 100 -> Plus
2R 23945898..23946077 640..819 100 -> Plus
2R 23946137..23946261 820..944 100 -> Plus
2R 23946438..23946520 945..1027 100 -> Plus
2R 23946601..23946744 1028..1173 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:35:35 Download gff for BO10909.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19831988..19832263 17..292 100 -> Plus
arm_2R 19832330..19832426 293..389 100 -> Plus
arm_2R 19832483..19832603 390..510 100 -> Plus
arm_2R 19833219..19833347 511..639 100 -> Plus
arm_2R 19833421..19833600 640..819 100 -> Plus
arm_2R 19833660..19833784 820..944 100 -> Plus
arm_2R 19833961..19834043 945..1027 100 -> Plus
arm_2R 19834124..19834267 1028..1173 98   Plus

BO10909.pep Sequence

Translation from 16 to 1189

> BO10909.pep
MGCFGSPTSKQSDVNSEDSKSQKRRSDAISRQLQKDKQLYRATHRLLLLG
AGESGKSTIVKQMRILHVDGFSDSEKKQKIDDIKKNIRDAILTITGAMST
LNPPVALEKKENEPRVEYIQDYASSPDFNYPPEFYEHTEELWKDKGVLQT
YERSNEYQLIDCAKYFLDRVSTIKNPNYTPNEQDILRCRVLTSGIFETRF
QVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPT
QNRLRESLDLFKSIWNNRWLRTISIILFLNKQDLLAEKIKAGKSKLSEYF
SEFNKYQTPIDTGDAIMESNDDPEVIRAKYFIRDEFLRISTASGDGKHYC
YPHFTCAVDTENIKRVFNDCRDIIQRMHLRQYELLASFLDH

BO10909.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:49:03
Subject Length Description Subject Range Query Range Score Percent Strand
Galphas-PD 385 CG2835-PD 1..385 1..385 2024 100 Plus
Galphas-PB 385 CG2835-PB 1..385 1..385 2024 100 Plus
Galphas-PE 382 CG2835-PE 1..382 1..385 1989 99 Plus
Galphas-PA 382 CG2835-PA 1..382 1..385 1989 99 Plus
Galphas-PC 382 CG2835-PC 1..382 1..385 1989 99 Plus