Clone Sequence Records
BO10913.3prime Sequence
798 bp (702 high quality bases) assembled on 2006-04-19
> BO10913.3prime
ATGGTCTAGAAAGCTTGCTCTCGTTTTCAAGAACAAATCAAATGTTTCCA
AATCACTTTTAGCCACATTTCGGACGAAATAAAAGTTATTGCCTTCCACT
ATAGTTTTTGGCGATATATACAGGTCTTTTTGCGGATCATATTGCGCTCT
TCCAAGCAATTTCAGGAACTCATGACGTTCCCGCAGCCTAAATTCGCGTG
AGGCCAAAAGCTCCGGGCACTGGACAATCTGGGCATGTGGAAGGCCCATA
TCCTGGTGAATGTAACTAAATCGCTCGACAAGATCATCCGGAGGAATCAT
CAAGAGGCGCGGCTTTCGTACCACCAGGTCACTTAGCTCCTTGGCATTGA
ATCCCATTTCCTCCTTAAGGGTGAACACAGACTTGCGGAGGTGTTCCATA
TTGTAGGTAATGGCATTGGGTTCTCTGGTGGCCAACAGTCGCAAATCATG
ACCACTCAATTTGAACTCCTTTTGGAAGTAACCCAATCGACGATCCACTC
GCCTGGTGGAGAACATCAGCCAATAAGGATTCTGGGTGAGAATTCTTTGC
CTGGCTTCGTCCGAGAATCTCTTGCTTTTTAGATAGTTCACTCTGGTCTG
CAGATCGTCCAAGTCCTCCTTGAACAGCAGCGGGTTCTTGGTGAACATCC
TGCCGAAGTCATCGGGTGATACGCCCTGATCCACCAGGAACGTTATGTAG
GGCTTCACATTTTTCTCGAAATCCAGCTTCAATACAAAGTCTCCCCATCC
CTTTCGCCGTTCAATACTGTGCAGAACCACTCCCACGCTGAGAAATTG
BO10913.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:13:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5047-PA | 1065 | CG5047-RA | 283..1062 | 798..19 | 3725 | 99.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:48:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mTerf3-RA | 1124 | CG5047-RA | 315..1094 | 798..19 | 3795 | 99.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:48:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20519954..20520458 | 294..798 | 2450 | 99 | Plus |
| 3L | 28110227 | 3L | 20519620..20519894 | 19..293 | 1345 | 99.3 | Plus |
Blast to na_te.dros performed on 2015-02-12 12:48:43 has no hits.
BO10913.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:52:55 Download gff for
BO10913.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5047-PA | 283..1065 | 15..798 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:11:15 Download gff for
BO10913.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5047-PA | 283..1065 | 15..798 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:32:18 Download gff for
BO10913.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mTerf3-RA | 315..1098 | 14..798 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:19:04 Download gff for
BO10913.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mTerf3-RA | 315..1098 | 14..798 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:19:04 Download gff for
BO10913.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20519616..20519894 | 14..293 | 98 | <- | Plus |
| 3L | 20519954..20520458 | 294..798 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:32:18 Download gff for
BO10913.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20512716..20512994 | 14..293 | 98 | <- | Plus |
| arm_3L | 20513054..20513558 | 294..798 | 99 | | Plus |
BO10913.5prime Sequence
721 bp (718 high quality bases) assembled on 2006-04-19
> BO10913.5prime
GAAGTTATCAGTCGACATGTTTTGTTCAGCTCTACGTAACATTTTGAGGA
ATTCACAAAATGCGGCTAACAACGCAACAATTACCTCACAAATACGAAAT
CTGCGAGGACAACAAAGTGTCCACCATGAGGTAGAAGTGTTAACATCACC
GGGTATAACCACCAAACAGAATGACAAGAAGACCGAGCCTGCGGAATGTG
AAGGCTCCAAAGAAGTGGCTCTGGACTTCCGAAATCGGGAGGCCCATGTG
CCTTCCTTCAATTTGGCGGCCTATGTGAACAACTCGAGTACCCTGCAGCA
ATTTCTCAGCTTGGGAGTGGATCTGCACAGTATTGAACGGGGAAAGGGAT
TGGGAGACTTTGTACTGAAGCTGGATTTCCAGAAAAATGTGAAGCCCTAC
ATAACGTTCCTGGTGGATCAGGGCGTATCACCCGATGACTTCGGCAGGAT
GTTCACCAAGAACCCGCTGCTGTTCAAGGAGGACTTGGACGATCTGCAGA
CCAGAATGAACTATCTAAAAAGCAAGAGATTCTCGGACGAAGCCAGGCAA
AGAATTCTCACCCAGAATCCTTATTGGCTGATGTTCTCCACCAGGCGAGT
GGATCGTCGATTGGGTTACTTCCAAAAGGAATTCAAATTGAGTGGTCATG
ATCTGCGACTGTTGGCCACCAGAGAAACCAATGCCATTACCTACAATATG
GAACACCTCCGCAAGTCTGTG
BO10913.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:13:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5047-PA | 1065 | CG5047-RA | 1..705 | 17..721 | 3375 | 99.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:51:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mTerf3-RA | 1124 | CG5047-RA | 32..737 | 16..721 | 3440 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:51:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20520036..20520741 | 721..16 | 3440 | 99.2 | Minus |
Blast to na_te.dros performed on 2015-02-11 14:51:42 has no hits.
BO10913.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:52:56 Download gff for
BO10913.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5047-PA | 1..705 | 17..721 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:11:17 Download gff for
BO10913.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5047-PA | 1..705 | 17..721 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:01:47 Download gff for
BO10913.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mTerf3-RA | 32..737 | 16..721 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:10:00 Download gff for
BO10913.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mTerf3-RA | 32..737 | 16..721 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:10:00 Download gff for
BO10913.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20520036..20520741 | 16..721 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:01:47 Download gff for
BO10913.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20513136..20513841 | 16..721 | 99 | | Minus |
BO10913.complete Sequence
1096 bp assembled on 2008-11-10
GenBank Submission: KX800051
> BO10913.complete
GAAGTTATCAGTCGACATGTTTTGTTCAGCTCTACGTAACATTTTGAGGA
ATTCACAAAATGCGGCTAAAAACGCAACAATTACCTCACAAATACGAAAT
CTGCGAGGACAACAAAGTGTCCACCATGAGGTAGAAGTGTTAACATCACC
GGGTATAACCACCAAACAGAATGACAAGAAGACCGAGCCTGCGGAATGTG
AAGGCTCCAAAGAAGTGGCTCTGGACTTCCGAAATCGGGAGGCCCATGTG
CCTTCCTTCAATTTGGCGGCCTATGTGAACAACTCGAGTACCCTGCAGCA
ATTTCTCAGCTTGGGAGTGGATCTGCACAGTATTGAACGGCGAAAGGGAT
TGGGAGACTTTGTACTGAAGCTGGATTTCGAGAAAAATGTGAAGCCCTAC
ATAACGTTCCTGGTGGATCAGGGCGTATCACCCGATGACTTCGGCAGGAT
GTTCACCAAGAACCCGCTGCTGTTCAAGGAGGACTTGGACGATCTGCAGA
CCAGAGTGAACTATCTAAAAAGCAAGAGATTCTCGGACGAAGCCAGGCAA
AGAATTCTCACCCAGAATCCTTATTGGCTGATGTTCTCCACCAGGCGAGT
GGATCGTCGATTGGGTTACTTCCAAAAGGAGTTCAAATTGAGTGGTCATG
ATCTGCGACTGTTGGCCACCAGAGAACCCAATGCCATTACCTACAATATG
GAACACCTCCGCAAGTCTGTGTTCACCCTTAAGGAGGAAATGGGATTCAA
TGCCAAGGAGCTAAGTGACCTGGTGGTACGAAAGCCGCGCCTCTTGATGA
TTCCTCCGGATGATCTTGTCGAGCGATTTAGTTACATTCACCAGGATATG
GGCCTTCCACATGCCCAGATTGTCCAGTGCCCGGAGCTTTTGGCCTCACG
CGAATTTAGACTGCGGGAACGTCATGAGTTCCTGAAATTGCTTGGAAGAG
CGCAATATGATCCGCAAAAAGACCTGTATATATCGCCAAAAACTATAGTG
GAAGGCAATAACTTTTATTTCGTCCGAAATGTGGCTAAAAGTGATTTGGA
AACATTTGATTTGTTTTTGAAAACGAGAGCAAGCTTTCTAGACCAT
BO10913.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:43:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mTerf3-RA | 1065 | CG5047-PA | 1..1062 | 17..1078 | 5310 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:44:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mTerf3-RA | 1124 | CG5047-RA | 32..1094 | 16..1078 | 5315 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:43:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20519954..20520741 | 803..16 | 3940 | 100 | Minus |
| 3L | 28110227 | 3L | 20519620..20519894 | 1078..804 | 1375 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 21:43:58 has no hits.
BO10913.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:50:22 Download gff for
BO10913.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mTerf3-RA | 2..1070 | 15..1083 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:35:00 Download gff for
BO10913.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mTerf3-RA | 40..1094 | 24..1080 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:10:53 Download gff for
BO10913.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5047-RA | 12..1066 | 24..1080 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:40:54 Download gff for
BO10913.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mTerf3-RA | 40..1094 | 24..1080 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:40:54 Download gff for
BO10913.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20519618..20519894 | 804..1080 | 99 | <- | Minus |
| 3L | 20519954..20520733 | 24..803 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:35:00 Download gff for
BO10913.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20512718..20512994 | 804..1080 | 99 | <- | Minus |
| arm_3L | 20513054..20513833 | 24..803 | 100 | | Minus |
BO10913.pep Sequence
Translation from 16 to 1096
> BO10913.pep
MFCSALRNILRNSQNAAKNATITSQIRNLRGQQSVHHEVEVLTSPGITTK
QNDKKTEPAECEGSKEVALDFRNREAHVPSFNLAAYVNNSSTLQQFLSLG
VDLHSIERRKGLGDFVLKLDFEKNVKPYITFLVDQGVSPDDFGRMFTKNP
LLFKEDLDDLQTRVNYLKSKRFSDEARQRILTQNPYWLMFSTRRVDRRLG
YFQKEFKLSGHDLRLLATREPNAITYNMEHLRKSVFTLKEEMGFNAKELS
DLVVRKPRLLMIPPDDLVERFSYIHQDMGLPHAQIVQCPELLASREFRLR
ERHEFLKLLGRAQYDPQKDLYISPKTIVEGNNFYFVRNVAKSDLETFDLF
LKTRASFLDH
BO10913.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:24:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mTerf3-PA | 354 | CG5047-PA | 1..354 | 1..354 | 1827 | 100 | Plus |
