Clone Sequence Records
BO10914.3prime Sequence
985 bp (866 high quality bases) assembled on 2006-04-19
> BO10914.3prime
ATGGTCTAGAAAGCTTGCGTGGAACTGAAGGAAGAGGGAGCGTTCGCAGG
CCTCCTCAAGCAAAGCTTGCTGCCTAACCTTCTCTTCGGGAGTGAGCTCT
TTCACCAATTCGTCGAAGCCATCGTCCGAGTAAGTAGGTTCCTCATCTAC
CATGCCCCCATCAATCTCTTCACCAGCGGCTGCTGGCAAGAGTGGTTCGC
CAATGATGCTACGTATGTCATTGGGCAACGTTTCAGAGCCCTTGAGCTGC
AGATAGATACCCTCAGCTACCTGCAAGGTTTTTTGAACATCTATGTTTCC
AGACAGTTCGTTTACATGCTTCAGGATTTCTGTGAACTCGTACTGGCTGT
CGATGATCACTCTAGTCTCTTGATCGAGGATGGCCACCGAAAACAGTAGG
TGGAAGTTGGGGCAGGGTAGCCGAGTCCACAGACATTCCCATAATTTCAA
AACGTCCTCGCTGTTTAGCTCCCGCTTATACCAAACCAAGAGCCATCTGA
AGCAGAAGTACATGTTGTCCGAGTCGTGGGATCTCATGTAGTTAAATAGC
GGGGCATTGGCAAATTCAATAAGGCGACGAATCTGGGCGAACTGCGTTTT
CATGCCCGCCTGGTCTATGTCAAAGTTGGTAAACACCAGCTCCATGAAGC
CCACAAAGCACCAGAAGGTGTCCACTTCGTTTACCTGGATCTCCAAAATG
GGCGCAAGCAGATCGGACATACCCTGAACATAACCAAGGTCAAAGTTATA
CATCACGTATGTCATAAGGATACCCTGGAGAAGGGTTAGATTGGGATTAT
CCTCTCCGGCAAAGAATTGCAAAGAGCGATCTGTGCGTTTCACATCCTTT
TCAATCTGGCACTTGCGCTCCCGGTAGCCACAGAAATTCGCCTCCTGGGT
CGTAGTCATAGCAAGCCACTGGGCCTTCATGTTGTAGTACTCAATAGACT
TTTGCTTACGACGCTCGATCCGCTTCACATGAGTA
BO10914.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:13:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11490-PA | 2148 | CG11490-RA | 1179..2145 | 985..19 | 4810 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:28:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tbc1d15-17-RC | 3121 | CG11490-RC | 1285..2251 | 985..19 | 4820 | 99.9 | Minus |
| Tbc1d15-17-RB | 3129 | CG11490-RB | 1512..2478 | 985..19 | 4820 | 99.9 | Minus |
| Tbc1d15-17-RA | 2902 | CG11490-RA | 1285..2251 | 985..19 | 4820 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:28:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 208889..209855 | 985..19 | 4820 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:28:14 has no hits.
BO10914.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:52:57 Download gff for
BO10914.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11490-PA | 1180..2148 | 15..984 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:11:18 Download gff for
BO10914.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11490-PA | 1180..2148 | 15..984 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:28:47 Download gff for
BO10914.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tbc1d15-17-RA | 1286..2256 | 11..984 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:48:34 Download gff for
BO10914.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tbc1d15-17-RA | 1286..2256 | 11..984 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:48:34 Download gff for
BO10914.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 208890..209860 | 11..984 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:28:47 Download gff for
BO10914.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 208890..209860 | 11..984 | 99 | | Minus |
BO10914.5prime Sequence
940 bp (762 high quality bases) assembled on 2006-04-19
> BO10914.5prime
GAAGTTATCAGTCGACATGGACGAATCGGTGCGATATGACCGCTGTCACC
AGGTGCAGCTGGGCGTTTTCAACGAGTCGCAGTTGTCTTCTGTGGAGGAG
GACGTGCAGAATCTGCCTCAGCAGGGAACGGGAAACATCCTCTTCACCCA
CGACGGCGTGCTTCTGAAGAAAGCCAGTGCGGAGCACATCGCGGATCTGA
ACACCAGCGGCTCCCTTTCCTTGGTGGAATATTCGCGATCCATCGCGGAA
ATGCCCCGTAGGAGACTGTTGCTCGAGTGGCAGCCCAATGACAGTATCAT
GATTGCGGACGACAGCCAGGATCAGGGAGACTGGGCGCTGGTAGACAGGA
TTTCCGGGCGAACACGCACCACATCCGAGTGCCGTGCCTTCAACACTAGA
CCCATTGAACCGAGCGGTGGAGCGACCACCCGTTCGCGAGTCATGCGTGC
CCAACTGGAAGATTTGTCTTCTGTAGAGGTGCGCCATCGCGGACAGACGA
TCCGTTTTATGCGGAAAGGGGCTAATGGCGTCCACAGCGAGTTCTTTTTC
CAGCATGGAAACGCAGACCTATTTGTGCGCTCCATGCGCGATCAGCACCT
AATCGAGAACGCCGAGACTAGTCGCAGTGGCGGCGAGGTGTATGCCATAT
TGACCACCGAGAACCAAAAATTGAAAAAGACGTTTGCTGAACTTGACATT
GGCCAGATTAAGGCAAGCCAATTGCCACGTGAGAGCTGGCTGCCCAACAA
GCTGGCCGGAATCCTGGGCAACATTCCCGATTACGTACAGCCTCCGTTCC
AGCGTTCGCCCAAATCTAGGCCGGGAGTCTTGATCTCTGGCGATCGGCAG
ACTTCACCGGACAATTATCAAAATAATTGGGCTAAGTGGCAGCACCAATA
GTGCCCTGTCCCTCAACGGACAGTCTCGTGGGGGCAGTGC
BO10914.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:13:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11490-PA | 2148 | CG11490-RA | 1..856 | 17..872 | 4280 | 100 | Plus |
| CG11490-PA | 2148 | CG11490-RA | 854..888 | 871..905 | 175 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:26:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tbc1d15-17-RC | 3121 | CG11490-RC | 106..1029 | 16..940 | 4540 | 99.6 | Plus |
| Tbc1d15-17-RB | 3129 | CG11490-RB | 333..1256 | 16..940 | 4540 | 99.6 | Plus |
| Tbc1d15-17-RA | 2902 | CG11490-RA | 106..1029 | 16..940 | 4540 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:26:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 207707..208513 | 133..940 | 3885 | 99 | Plus |
| 2L | 23513712 | 2L | 207511..207631 | 16..136 | 605 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 08:26:49 has no hits.
BO10914.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:52:58 Download gff for
BO10914.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11490-PA | 1..923 | 17..940 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:11:19 Download gff for
BO10914.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11490-PA | 1..923 | 17..940 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:36:24 Download gff for
BO10914.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tbc1d15-17-RA | 102..1029 | 9..940 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:12:40 Download gff for
BO10914.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tbc1d15-17-RA | 102..1029 | 9..940 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:12:40 Download gff for
BO10914.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 207507..207631 | 9..136 | 97 | -> | Plus |
| 2L | 207711..208513 | 137..940 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:36:24 Download gff for
BO10914.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 207507..207631 | 9..136 | 97 | -> | Plus |
| arm_2L | 207711..208513 | 137..940 | 99 | | Plus |
BO10914.complete Sequence
2179 bp (2179 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631921
> BO10914.complete
GAAGTTATCAGTCGACATGGACGAATCGGTGCGATATGACCGCTGTCACC
AGGTGCAGCTGGGCGTTTTCAACGAGTCGCAGTTGTCTTCTGTGGAGGAG
GACGTGCAGAATCTGCCTCAGCAGGGAACGGGAAACATCCTCTTCACCCA
CGACGGCGTGCTTCTGAAGAAAGCCAGTGCGGAGCACATCGCGGATCTGA
ACACCAGCGGCTCCCTTTCCTTGGTGGAATATTCGCGATCCATCGCGGAA
ATGCCCCGTAGGAGACTGTTGCTCGAGTGGCAGCCCAATGACAGTATCAT
GATTGCGGACGACAGCCAGGATCAGGGAGACTGGGCGCTGGTAGACAGGA
TTTCCGGGCGAACACGCACCACATCCGAGTGCCGTGCCTTCAACACTAGA
CCCATTGAACCGAGCGGTGGAGCGACCACCCGTTCGCGAGTCATGCGTGC
CCAACTGGAAGATTTGTCTTCTGTAGAGGTGCGCCATCGCGGACAGACGA
TCCGTTTTATGCGGAAAGGGGCTAATGGCGTCCACAGCGAGTTCTTTTTC
CAGCATGGAAACGCAGACCTATTTGTGCGCTCCATGCGCGATCAGCACCT
AATCGAGAACGCCGAGACTAGTCGCAGTGGCGGCGAGGTGTATGCCATAT
TGACCACCGAGAACCAAAAATTGAAAAAGACGTTTGCTGAACTTGACATT
GGCCAGATTAAGGCAAGCCAATTGCCACGTGAGAGCTGGCTGCCCAACAA
GCTGGCCGGAATCCTGGGCAACATTCCCGATTACGTACAGCCTCCGTTCC
AGCGTTCGCCCAAATCTAGGCCGGGAGTCTTGATCTCTGGCGATCGGCAG
ACTTCACCGGACAATTATCAAATAATTGGGCTAAGTGGCAGCACCAATAG
TGCCTGTTCCTCAAACGGACAGTCTCGTGGGGGCAGTGCAGAGAAGTCTC
CCGCCGACAGCGAGCTGGAAACTCTTAATGCCCAGGACGAAAAAATAGTT
AACAACTTGCCCGATCGCCAGCGGGTGGAGAGAGGTCATCCCCTAACCGA
GACGCAGTGGCTAGAGTTTCAGACGCCCGACGGCCGAATTTCCGATAGCG
CCCGAATCAAGGAGCTCATCTTCCGCGGCGGCGTCGTGCAGAGCCTGCGG
CCAGAGGTTTGGAAGTTCCTTCTCAATTACTACCTTTGGTCGGATACTCA
TGTGGAGCGGATCGAGCGTCGTAAGCAAAAGTCTATTGAGTACTACAACA
TGAAGGCCCAGTGGCTTGCTATGACTACGACCCAGGAGGCGAATTTCTGT
GGCTACCGGGAGCGCAAGTGCCAGATTGAAAAGGATGTGAAACGCACAGA
TCGCTCTTTGCAATTCTTTGCCGGAGAGGATAATCCCAATCTAACCCTTC
TCCAGGGTATCCTTATGACATACGTGATGTATAACTTTGACCTTGGTTAT
GTTCAGGGTATGTCCGATCTGCTTGCGCCCATTTTGGAGATCCAGGTAAA
CGAAGTGGACACCTTCTGGTGCTTTGTGGGCTTCATGGAGCTGGTGTTTA
CCAACTTTGACATAGACCAGGCGGGCATGAAAACGCAGTTCGCCCAGATT
CGTCGCCTTATTGAATTTGCCAATGCCCCGCTATTTAACTACATGAGATC
CCACGACTCGGACAACATGTACTTCTGCTTCAGATGGCTCTTGGTTTGGT
ATAAGCGGGAGCTAAACAGCGAGGACGTTTTGAAATTATGGGAATGTCTG
TGGACTCGGCTACCCTGCCCCAACTTCCACCTACTGTTTTCGGTGGCCAT
CCTCGATCAAGAGACTAGAGTGATCATCGACAGCCAGTACGAGTTCACAG
AAATCCTGAAGCATGTAAACGAACTGTCTGGAAACATAGATGTTCAAAAA
ACCTTGCAGGTAGCTGAGGGTATCTATCTGCAGCTCAAGGGCTCTGAAAC
GTTGCCCAATGACATACGTAGCATCATTGGCGAACCACTCTTGCCAGCAG
CCGCTGGTGAAGAGATTGATGGGGGCATGGTAGATGAGGAACCTACTTAC
TCGGACGATGGCTTCGACGAATTGGTGAAAGAGCTCACTCCCGAAGAGAA
GGTTAGGCAGCAAGCTTTGCTTGAGGAGGCCTGCGAACGCTCCCTCTTCC
TTCAGTTCCACGCAAGCTTTCTAGACCAT
BO10914.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:46:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tbc1d15-17-RC | 2148 | CG11490-PC | 1..2145 | 17..2161 | 10725 | 100 | Plus |
| Tbc1d15-17-RB | 2148 | CG11490-PB | 1..2145 | 17..2161 | 10725 | 100 | Plus |
| Tbc1d15-17-RA | 2148 | CG11490-PA | 1..2145 | 17..2161 | 10725 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:46:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tbc1d15-17-RC | 3121 | CG11490-RC | 106..2251 | 16..2161 | 10730 | 100 | Plus |
| Tbc1d15-17-RB | 3129 | CG11490-RB | 333..2478 | 16..2161 | 10730 | 100 | Plus |
| Tbc1d15-17-RA | 2902 | CG11490-RA | 106..2251 | 16..2161 | 10730 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:46:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 208727..209855 | 1033..2161 | 5645 | 100 | Plus |
| 2L | 23513712 | 2L | 207707..208610 | 133..1036 | 4505 | 99.9 | Plus |
| 2L | 23513712 | 2L | 207511..207631 | 16..136 | 605 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:46:30 has no hits.
BO10914.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:56:19 Download gff for
BO10914.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11490-RA | 1..2148 | 17..2165 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:13:22 Download gff for
BO10914.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11490-RA | 109..2263 | 9..2169 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:41:58 Download gff for
BO10914.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tbc1d15-17-RA | 107..2251 | 17..2163 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:56:20 Download gff for
BO10914.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11490-RA | 109..2263 | 9..2169 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:30:31 Download gff for
BO10914.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tbc1d15-17-RA | 107..2251 | 17..2163 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:30:31 Download gff for
BO10914.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 207512..207631 | 17..136 | 100 | -> | Plus |
| 2L | 207711..208608 | 137..1034 | 100 | -> | Plus |
| 2L | 208729..209855 | 1035..2163 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:41:58 Download gff for
BO10914.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 207512..207631 | 17..136 | 100 | -> | Plus |
| arm_2L | 207711..208608 | 137..1034 | 100 | -> | Plus |
| arm_2L | 208729..209855 | 1035..2163 | 99 | | Plus |
BO10914.pep Sequence
Translation from 16 to 2179
> BO10914.pep
MDESVRYDRCHQVQLGVFNESQLSSVEEDVQNLPQQGTGNILFTHDGVLL
KKASAEHIADLNTSGSLSLVEYSRSIAEMPRRRLLLEWQPNDSIMIADDS
QDQGDWALVDRISGRTRTTSECRAFNTRPIEPSGGATTRSRVMRAQLEDL
SSVEVRHRGQTIRFMRKGANGVHSEFFFQHGNADLFVRSMRDQHLIENAE
TSRSGGEVYAILTTENQKLKKTFAELDIGQIKASQLPRESWLPNKLAGIL
GNIPDYVQPPFQRSPKSRPGVLISGDRQTSPDNYQIIGLSGSTNSACSSN
GQSRGGSAEKSPADSELETLNAQDEKIVNNLPDRQRVERGHPLTETQWLE
FQTPDGRISDSARIKELIFRGGVVQSLRPEVWKFLLNYYLWSDTHVERIE
RRKQKSIEYYNMKAQWLAMTTTQEANFCGYRERKCQIEKDVKRTDRSLQF
FAGEDNPNLTLLQGILMTYVMYNFDLGYVQGMSDLLAPILEIQVNEVDTF
WCFVGFMELVFTNFDIDQAGMKTQFAQIRRLIEFANAPLFNYMRSHDSDN
MYFCFRWLLVWYKRELNSEDVLKLWECLWTRLPCPNFHLLFSVAILDQET
RVIIDSQYEFTEILKHVNELSGNIDVQKTLQVAEGIYLQLKGSETLPNDI
RSIIGEPLLPAAAGEEIDGGMVDEEPTYSDDGFDELVKELTPEEKVRQQA
LLEEACERSLFLQFHASFLDH
BO10914.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:52:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tbc1d15-17-PC | 715 | CG11490-PC | 1..715 | 1..715 | 3732 | 100 | Plus |
| Tbc1d15-17-PB | 715 | CG11490-PB | 1..715 | 1..715 | 3732 | 100 | Plus |
| Tbc1d15-17-PA | 715 | CG11490-PA | 1..715 | 1..715 | 3732 | 100 | Plus |
| CG5337-PA | 702 | CG5337-PA | 372..663 | 356..647 | 454 | 34.8 | Plus |
| CG8155-PA | 1098 | CG8155-PA | 185..441 | 325..582 | 361 | 33.5 | Plus |
