Clone BO10919 Report

Search the DGRC for BO10919

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:109
Well:19
Vector:pDNR-Dual
Associated Gene/Transcriptdikar-RB
Protein status:BO10919.pep: validated full length
Sequenced Size:1060

Clone Sequence Records

BO10919.3prime Sequence

872 bp (764 high quality bases) assembled on 2006-04-19

> BO10919.3prime
ATGGTCTAGAAAGCTTGCGGAACATTGGCGTGCTAACCGTCTGCGTGTGC
GCTGCTGCGATTGCTGCTGTTGTTGCTGCTGCTGTTGCTGCTGTTGTTGC
TGCTGCTGCGGCGGTGCCAACCAGTGTGCGTTTTGCCGATCCTGGTAGAG
ATTCTCCCGCTCACGACGCTGGCGCTCCTCCTCCTGGCGTGCCTTCAACT
CCGCGATGTTGCGAATGCGGCTGGAGTTGCGCACTTGCAAAAGTTTCCTA
CGCCTCAAACGCTCACGTTCGCGGAAAAGCTGCGGCAGCTTGGGCAGAAA
GTTGTCATCGAGTATGTTAAAGAGTTCGCGCTCCTTGGCGTTCGTCGAGG
TCTTAAACTTGGCGGCCAAGTTTTGCCAGTCCTCTTCGGTGAAGCAGATG
ACTTGCCAAACTGTACCGTTGCTGCCGATGCCCTTGCTGTTGGATGCTCC
GCCAGTTGAGGCTCCAGCGCCACCTGATCCCGAACCCGAACTGGAGGAGG
CCGATCCACCGGTGGCTTTGTCCTCCCGATATAGTCGCGTGCCGTAGAAG
TACCAGTAGCCGGAATTCTTGGCGTCGTAGCCCAGAGGCTCCACGCGCAG
ACTATCCGCCTCTAGATTGCTGAGGATGACCTGCACATCGACGGAGTCCA
GGCGAAAGTGGCACAGATCGTGCAGAATGTGCAGGCGCTTGCGCACGGGC
AGCGACTGGAAGTCAATGTCCGTGTCGAAGTGGTTCTCGGTCTGGTGCAG
GCGACACTGTTGGCGCAGGAAGCGACGCAAGAACATCTGATAGTTGCTGT
GTGTGATTTCCTTGGCTACCGTCTGTAGCGCATCGCAGCCCTTGAGCAGG
CGCACAATTAACTCGGGCACTA

BO10919.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:13:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG32393-PA 1029 dikar-RA 173..1026 872..19 4270 100 Minus
CG32393-PB 1029 dikar-RB 173..1026 872..19 4270 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:38:33
Subject Length Description Subject Range Query Range Score Percent Strand
dikar-RE 3009 CG42799-RE 419..1272 872..19 4270 100 Minus
dikar-RB 1578 CG42799-RB 382..1235 872..19 4270 100 Minus
dikar-RG 11160 CG42799-RG 419..1253 872..38 4175 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:38:27
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6740957..6741584 245..872 3140 100 Plus
3L 28110227 3L 6740648..6740873 19..244 1130 100 Plus
Blast to na_te.dros performed on 2015-02-10 22:38:30 has no hits.

BO10919.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:53:07 Download gff for BO10919.3prime
Subject Subject Range Query Range Percent Splice Strand
dikar-PB 174..1029 18..871 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:11:33 Download gff for BO10919.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32393-PB 174..1029 18..871 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:49:13 Download gff for BO10919.3prime
Subject Subject Range Query Range Percent Splice Strand
dikar-RB 383..1235 19..871 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:05:17 Download gff for BO10919.3prime
Subject Subject Range Query Range Percent Splice Strand
dikar-RB 383..1235 19..871 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:05:17 Download gff for BO10919.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 6740648..6740873 19..244 100 <- Plus
3L 6740957..6741583 245..871 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:49:13 Download gff for BO10919.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6733748..6733973 19..244 100 <- Plus
arm_3L 6734057..6734683 245..871 100   Plus

BO10919.5prime Sequence

859 bp (817 high quality bases) assembled on 2006-04-19

> BO10919.5prime
GAAGTTATCAGTCGACATGGTTTCTACTTTCATTGGATTATTAGACATTC
AATCATGGTGGGAGATACCGTGTATTTCGCATTTCTGTTCATTGTTTAGT
TCTGCCTTTGATCTGCCCGACATCGACATCGAGGACCTCGAATCGGCGCT
GCTCTCCGATGGTACCAGCGATGAGGATCAGGTCGCCCTAGTGCCCGAGT
TAATTGTGCGCCTGCTCAAGGGCTGCGATGCGCTACAGACGGTAGCCAAG
GAAATCACACACAGCAACTATCAGATGTTCTTGCGTCGCTTCCTGCGCCA
ACAGTGTCGCCTGCACCAGACCGAGAACCACTTCGACACGGACATTGACT
TCCAGTCGCTGCCCGTGCGCAAGCGCCTGCACATTCTGCACGATCTGTGC
CACTTTCGCCTGGACTCCGTCGATGTGCAGGTCATCCTCAGCAATCTAGA
GGCGGATAGTCTGCGCGTGGAGCCTCTGGGCTACGACGCCAAGAATTCCG
GCTACTGGTACTTCTACGGCACGCGACTATATCGGGAGGACAAAGCCACC
GGTGGATCGGCCTCCTCCAGTTCGGGTTCGGGATCAGGTGGCGCTGGAGC
CTCAACTGGCGGAGCATCCAACAGCAAGGGCATCGGCAGCAACGGTACAG
TTTGGCAAGTCATCTGCTTCACCGAAGAGGACTGGCAAAACTTGGCCGCC
AAGTTTAAGACCTCGACGAACGCCAAGGAGCGCGAACTCTTTAACATACT
CGATGACAACTTTCTGCCCAAGCTGCCGCAGCTTTTCCGCGAACGTGAGC
GTTTGAGGCGTAGGAAACTTTTGCAAGTGCGCAACTCCAGCCGCATTCGC
AACATCGCG

BO10919.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:13:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG32393-PA 1029 dikar-RA 1..843 17..859 4215 100 Plus
CG32393-PB 1029 dikar-RB 1..843 17..859 4215 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:49:04
Subject Length Description Subject Range Query Range Score Percent Strand
dikar-RG 11160 CG42799-RG 247..1089 17..859 4215 100 Plus
dikar-RE 3009 CG42799-RE 247..1089 17..859 4215 100 Plus
dikar-RD 11586 CG42799-RD 247..1089 17..859 4215 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:48:57
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6740957..6741641 816..132 3425 100 Minus
3L 28110227 3L 6741701..6741792 134..43 460 100 Minus
3L 28110227 3L 6740831..6740873 859..817 215 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:49:00 has no hits.

BO10919.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:53:08 Download gff for BO10919.5prime
Subject Subject Range Query Range Percent Splice Strand
dikar-PB 1..843 17..859 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:11:35 Download gff for BO10919.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32393-PB 1..843 17..859 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:52:24 Download gff for BO10919.5prime
Subject Subject Range Query Range Percent Splice Strand
dikar-RD 242..1089 9..859 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:44:13 Download gff for BO10919.5prime
Subject Subject Range Query Range Percent Splice Strand
dikar-RD 242..1089 9..859 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:44:13 Download gff for BO10919.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 6740831..6740873 817..859 100 <- Minus
3L 6740957..6741639 134..816 100 <- Minus
3L 6741702..6741790 45..133 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:52:24 Download gff for BO10919.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6733931..6733973 817..859 100 <- Minus
arm_3L 6734057..6734739 134..816 100 <- Minus
arm_3L 6734802..6734890 45..133 100 <- Minus

BO10919.complete Sequence

1060 bp (1060 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ631922

> BO10919.complete
GAAGTTATCAGTCGACATGGTTTCTACTTTCATTGGATTATTAGACATTC
AATCATGGTGGGAGATACCGTGTATTTCGCATTTCTGTTCATTGTTTAGT
TCTGCCTTTGATCTGCCCGACATCGACATCGAGGACCTCGAATCGGCGCT
GCTCTCCGATGGTACCAGCGATGAGGATCAGGTCGCCCTAGTGCCCGAGT
TAATTGTGCGCCTGCTCAAGGGCTGCGATGCGCTACAGACGGTAGCCAAG
GAAATCACACACAGCAACTATCAGATGTTCTTGCGTCGCTTCCTGCGCCA
ACAGTGTCGCCTGCACCAGACCGAGAACCACTTCGACACGGACATTGACT
TCCAGTCGCTGCCCGTGCGCAAGCGCCTGCACATTCTGCACGATCTGTGC
CACTTTCGCCTGGACTCCGTCGATGTGCAGGTCATCCTCAGCAATCTAGA
GGCGGATAGTCTGCGCGTGGAGCCTCTGGGCTACGACGCCAAGAATTCCG
GCTACTGGTACTTCTACGGCACGCGACTATATCGGGAGGACAAAGCCACC
GGTGGATCGGCCTCCTCCAGTTCGGGTTCGGGATCAGGTGGCGCTGGAGC
CTCAACTGGCGGAGCATCCAACAGCAAGGGCATCGGCAGCAACGGTACAG
TTTGGCAAGTCATCTGCTTCACCGAAGAGGACTGGCAAAACTTGGCCGCC
AAGTTTAAGACCTCGACGAACGCCAAGGAGCGCGAACTCTTTAACATACT
CGATGACAACTTTCTGCCCAAGCTGCCGCAGCTTTTCCGCGAACGTGAGC
GTTTGAGGCGTAGGAAACTTTTGCAAGTGCGCAACTCCAGCCGCATTCGC
AACATCGCGGAGTTGAAGGCACGCCAGGAGGAGGAGCGCCAGCGTCGTGA
GCGGGAGAATCTCTACCAGGATCGGCAAAACGCACACTGGTTGGCACCGC
CGCAGCAGCAGCAACAACAGCAGCAACAGCAGCAGCAACAACAGCAGCAA
TCGCAGCAGCGCACACGCAGACGGTTAGCACGCCAATGTTCCGCAAGCTT
TCTAGACCAT

BO10919.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:20:54
Subject Length Description Subject Range Query Range Score Percent Strand
dikar-RE 1029 CG42799-PE 1..1026 17..1042 5130 100 Plus
dikar-RB 1029 CG42799-PB 1..1026 17..1042 5130 100 Plus
dikar-RG 9243 CG42799-PG 1..1007 17..1023 5035 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:20:55
Subject Length Description Subject Range Query Range Score Percent Strand
dikar-RE 3009 CG42799-RE 247..1272 17..1042 5130 100 Plus
dikar-RB 1578 CG42799-RB 210..1235 17..1042 5130 100 Plus
dikar-RG 11160 CG42799-RG 247..1253 17..1023 5035 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:20:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6740957..6741641 816..132 3425 100 Minus
3L 28110227 3L 6740648..6740873 1042..817 1130 100 Minus
3L 28110227 3L 6741701..6741792 134..43 460 100 Minus
Blast to na_te.dros performed on 2014-11-27 08:20:53 has no hits.

BO10919.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:48:44 Download gff for BO10919.complete
Subject Subject Range Query Range Percent Splice Strand
dikar-RB 1..1029 17..1043 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:20:01 Download gff for BO10919.complete
Subject Subject Range Query Range Percent Splice Strand
dikar-RB 205..1235 9..1042 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:09:43 Download gff for BO10919.complete
Subject Subject Range Query Range Percent Splice Strand
dikar-RB 210..1235 17..1044 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:48:44 Download gff for BO10919.complete
Subject Subject Range Query Range Percent Splice Strand
dikar-RB 205..1235 9..1042 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:16:28 Download gff for BO10919.complete
Subject Subject Range Query Range Percent Splice Strand
dikar-RB 210..1235 17..1044 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:16:28 Download gff for BO10919.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6740646..6740873 817..1044 99 <- Minus
3L 6740957..6741639 134..816 100 <- Minus
3L 6741702..6741790 45..133 100 <- Minus
3L 6741915..6741942 17..44 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:09:43 Download gff for BO10919.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6733746..6733973 817..1044 99 <- Minus
arm_3L 6734057..6734739 134..816 100 <- Minus
arm_3L 6734802..6734890 45..133 100 <- Minus
arm_3L 6735015..6735042 17..44 100   Minus

BO10919.pep Sequence

Translation from 16 to 1060

> BO10919.pep
MVSTFIGLLDIQSWWEIPCISHFCSLFSSAFDLPDIDIEDLESALLSDGT
SDEDQVALVPELIVRLLKGCDALQTVAKEITHSNYQMFLRRFLRQQCRLH
QTENHFDTDIDFQSLPVRKRLHILHDLCHFRLDSVDVQVILSNLEADSLR
VEPLGYDAKNSGYWYFYGTRLYREDKATGGSASSSSGSGSGGAGASTGGA
SNSKGIGSNGTVWQVICFTEEDWQNLAAKFKTSTNAKERELFNILDDNFL
PKLPQLFRERERLRRRKLLQVRNSSRIRNIAELKARQEEERQRRERENLY
QDRQNAHWLAPPQQQQQQQQQQQQQQQQSQQRTRRRLARQCSASFLDH

BO10919.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:49:00
Subject Length Description Subject Range Query Range Score Percent Strand
dikar-PE 342 CG42799-PE 1..342 1..342 1781 100 Plus
dikar-PB 342 CG32393-PB 1..342 1..342 1781 100 Plus
dikar-PG 3080 CG42799-PG 1..344 1..344 1753 98.3 Plus
dikar-PC 3080 CG42799-PC 1..344 1..344 1753 98.3 Plus
dikar-PD 3222 CG42799-PD 1..344 1..344 1753 98.3 Plus