Clone Sequence Records
BO10919.3prime Sequence
872 bp (764 high quality bases) assembled on 2006-04-19
> BO10919.3prime
ATGGTCTAGAAAGCTTGCGGAACATTGGCGTGCTAACCGTCTGCGTGTGC
GCTGCTGCGATTGCTGCTGTTGTTGCTGCTGCTGTTGCTGCTGTTGTTGC
TGCTGCTGCGGCGGTGCCAACCAGTGTGCGTTTTGCCGATCCTGGTAGAG
ATTCTCCCGCTCACGACGCTGGCGCTCCTCCTCCTGGCGTGCCTTCAACT
CCGCGATGTTGCGAATGCGGCTGGAGTTGCGCACTTGCAAAAGTTTCCTA
CGCCTCAAACGCTCACGTTCGCGGAAAAGCTGCGGCAGCTTGGGCAGAAA
GTTGTCATCGAGTATGTTAAAGAGTTCGCGCTCCTTGGCGTTCGTCGAGG
TCTTAAACTTGGCGGCCAAGTTTTGCCAGTCCTCTTCGGTGAAGCAGATG
ACTTGCCAAACTGTACCGTTGCTGCCGATGCCCTTGCTGTTGGATGCTCC
GCCAGTTGAGGCTCCAGCGCCACCTGATCCCGAACCCGAACTGGAGGAGG
CCGATCCACCGGTGGCTTTGTCCTCCCGATATAGTCGCGTGCCGTAGAAG
TACCAGTAGCCGGAATTCTTGGCGTCGTAGCCCAGAGGCTCCACGCGCAG
ACTATCCGCCTCTAGATTGCTGAGGATGACCTGCACATCGACGGAGTCCA
GGCGAAAGTGGCACAGATCGTGCAGAATGTGCAGGCGCTTGCGCACGGGC
AGCGACTGGAAGTCAATGTCCGTGTCGAAGTGGTTCTCGGTCTGGTGCAG
GCGACACTGTTGGCGCAGGAAGCGACGCAAGAACATCTGATAGTTGCTGT
GTGTGATTTCCTTGGCTACCGTCTGTAGCGCATCGCAGCCCTTGAGCAGG
CGCACAATTAACTCGGGCACTA
BO10919.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:13:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32393-PA | 1029 | dikar-RA | 173..1026 | 872..19 | 4270 | 100 | Minus |
CG32393-PB | 1029 | dikar-RB | 173..1026 | 872..19 | 4270 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:38:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dikar-RE | 3009 | CG42799-RE | 419..1272 | 872..19 | 4270 | 100 | Minus |
dikar-RB | 1578 | CG42799-RB | 382..1235 | 872..19 | 4270 | 100 | Minus |
dikar-RG | 11160 | CG42799-RG | 419..1253 | 872..38 | 4175 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:38:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6740957..6741584 | 245..872 | 3140 | 100 | Plus |
3L | 28110227 | 3L | 6740648..6740873 | 19..244 | 1130 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:38:30 has no hits.
BO10919.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:53:07 Download gff for
BO10919.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dikar-PB | 174..1029 | 18..871 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:11:33 Download gff for
BO10919.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32393-PB | 174..1029 | 18..871 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:49:13 Download gff for
BO10919.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dikar-RB | 383..1235 | 19..871 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:05:17 Download gff for
BO10919.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dikar-RB | 383..1235 | 19..871 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:05:17 Download gff for
BO10919.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6740648..6740873 | 19..244 | 100 | <- | Plus |
3L | 6740957..6741583 | 245..871 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:49:13 Download gff for
BO10919.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6733748..6733973 | 19..244 | 100 | <- | Plus |
arm_3L | 6734057..6734683 | 245..871 | 100 | | Plus |
BO10919.5prime Sequence
859 bp (817 high quality bases) assembled on 2006-04-19
> BO10919.5prime
GAAGTTATCAGTCGACATGGTTTCTACTTTCATTGGATTATTAGACATTC
AATCATGGTGGGAGATACCGTGTATTTCGCATTTCTGTTCATTGTTTAGT
TCTGCCTTTGATCTGCCCGACATCGACATCGAGGACCTCGAATCGGCGCT
GCTCTCCGATGGTACCAGCGATGAGGATCAGGTCGCCCTAGTGCCCGAGT
TAATTGTGCGCCTGCTCAAGGGCTGCGATGCGCTACAGACGGTAGCCAAG
GAAATCACACACAGCAACTATCAGATGTTCTTGCGTCGCTTCCTGCGCCA
ACAGTGTCGCCTGCACCAGACCGAGAACCACTTCGACACGGACATTGACT
TCCAGTCGCTGCCCGTGCGCAAGCGCCTGCACATTCTGCACGATCTGTGC
CACTTTCGCCTGGACTCCGTCGATGTGCAGGTCATCCTCAGCAATCTAGA
GGCGGATAGTCTGCGCGTGGAGCCTCTGGGCTACGACGCCAAGAATTCCG
GCTACTGGTACTTCTACGGCACGCGACTATATCGGGAGGACAAAGCCACC
GGTGGATCGGCCTCCTCCAGTTCGGGTTCGGGATCAGGTGGCGCTGGAGC
CTCAACTGGCGGAGCATCCAACAGCAAGGGCATCGGCAGCAACGGTACAG
TTTGGCAAGTCATCTGCTTCACCGAAGAGGACTGGCAAAACTTGGCCGCC
AAGTTTAAGACCTCGACGAACGCCAAGGAGCGCGAACTCTTTAACATACT
CGATGACAACTTTCTGCCCAAGCTGCCGCAGCTTTTCCGCGAACGTGAGC
GTTTGAGGCGTAGGAAACTTTTGCAAGTGCGCAACTCCAGCCGCATTCGC
AACATCGCG
BO10919.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:13:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32393-PA | 1029 | dikar-RA | 1..843 | 17..859 | 4215 | 100 | Plus |
CG32393-PB | 1029 | dikar-RB | 1..843 | 17..859 | 4215 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:49:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dikar-RG | 11160 | CG42799-RG | 247..1089 | 17..859 | 4215 | 100 | Plus |
dikar-RE | 3009 | CG42799-RE | 247..1089 | 17..859 | 4215 | 100 | Plus |
dikar-RD | 11586 | CG42799-RD | 247..1089 | 17..859 | 4215 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:48:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6740957..6741641 | 816..132 | 3425 | 100 | Minus |
3L | 28110227 | 3L | 6741701..6741792 | 134..43 | 460 | 100 | Minus |
3L | 28110227 | 3L | 6740831..6740873 | 859..817 | 215 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:49:00 has no hits.
BO10919.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:53:08 Download gff for
BO10919.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dikar-PB | 1..843 | 17..859 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:11:35 Download gff for
BO10919.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32393-PB | 1..843 | 17..859 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:52:24 Download gff for
BO10919.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dikar-RD | 242..1089 | 9..859 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:44:13 Download gff for
BO10919.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dikar-RD | 242..1089 | 9..859 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:44:13 Download gff for
BO10919.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6740831..6740873 | 817..859 | 100 | <- | Minus |
3L | 6740957..6741639 | 134..816 | 100 | <- | Minus |
3L | 6741702..6741790 | 45..133 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:52:24 Download gff for
BO10919.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6733931..6733973 | 817..859 | 100 | <- | Minus |
arm_3L | 6734057..6734739 | 134..816 | 100 | <- | Minus |
arm_3L | 6734802..6734890 | 45..133 | 100 | <- | Minus |
BO10919.complete Sequence
1060 bp (1060 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631922
> BO10919.complete
GAAGTTATCAGTCGACATGGTTTCTACTTTCATTGGATTATTAGACATTC
AATCATGGTGGGAGATACCGTGTATTTCGCATTTCTGTTCATTGTTTAGT
TCTGCCTTTGATCTGCCCGACATCGACATCGAGGACCTCGAATCGGCGCT
GCTCTCCGATGGTACCAGCGATGAGGATCAGGTCGCCCTAGTGCCCGAGT
TAATTGTGCGCCTGCTCAAGGGCTGCGATGCGCTACAGACGGTAGCCAAG
GAAATCACACACAGCAACTATCAGATGTTCTTGCGTCGCTTCCTGCGCCA
ACAGTGTCGCCTGCACCAGACCGAGAACCACTTCGACACGGACATTGACT
TCCAGTCGCTGCCCGTGCGCAAGCGCCTGCACATTCTGCACGATCTGTGC
CACTTTCGCCTGGACTCCGTCGATGTGCAGGTCATCCTCAGCAATCTAGA
GGCGGATAGTCTGCGCGTGGAGCCTCTGGGCTACGACGCCAAGAATTCCG
GCTACTGGTACTTCTACGGCACGCGACTATATCGGGAGGACAAAGCCACC
GGTGGATCGGCCTCCTCCAGTTCGGGTTCGGGATCAGGTGGCGCTGGAGC
CTCAACTGGCGGAGCATCCAACAGCAAGGGCATCGGCAGCAACGGTACAG
TTTGGCAAGTCATCTGCTTCACCGAAGAGGACTGGCAAAACTTGGCCGCC
AAGTTTAAGACCTCGACGAACGCCAAGGAGCGCGAACTCTTTAACATACT
CGATGACAACTTTCTGCCCAAGCTGCCGCAGCTTTTCCGCGAACGTGAGC
GTTTGAGGCGTAGGAAACTTTTGCAAGTGCGCAACTCCAGCCGCATTCGC
AACATCGCGGAGTTGAAGGCACGCCAGGAGGAGGAGCGCCAGCGTCGTGA
GCGGGAGAATCTCTACCAGGATCGGCAAAACGCACACTGGTTGGCACCGC
CGCAGCAGCAGCAACAACAGCAGCAACAGCAGCAGCAACAACAGCAGCAA
TCGCAGCAGCGCACACGCAGACGGTTAGCACGCCAATGTTCCGCAAGCTT
TCTAGACCAT
BO10919.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:20:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dikar-RE | 1029 | CG42799-PE | 1..1026 | 17..1042 | 5130 | 100 | Plus |
dikar-RB | 1029 | CG42799-PB | 1..1026 | 17..1042 | 5130 | 100 | Plus |
dikar-RG | 9243 | CG42799-PG | 1..1007 | 17..1023 | 5035 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:20:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dikar-RE | 3009 | CG42799-RE | 247..1272 | 17..1042 | 5130 | 100 | Plus |
dikar-RB | 1578 | CG42799-RB | 210..1235 | 17..1042 | 5130 | 100 | Plus |
dikar-RG | 11160 | CG42799-RG | 247..1253 | 17..1023 | 5035 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:20:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6740957..6741641 | 816..132 | 3425 | 100 | Minus |
3L | 28110227 | 3L | 6740648..6740873 | 1042..817 | 1130 | 100 | Minus |
3L | 28110227 | 3L | 6741701..6741792 | 134..43 | 460 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:20:53 has no hits.
BO10919.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:48:44 Download gff for
BO10919.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dikar-RB | 1..1029 | 17..1043 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:20:01 Download gff for
BO10919.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dikar-RB | 205..1235 | 9..1042 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:09:43 Download gff for
BO10919.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dikar-RB | 210..1235 | 17..1044 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:48:44 Download gff for
BO10919.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dikar-RB | 205..1235 | 9..1042 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:16:28 Download gff for
BO10919.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dikar-RB | 210..1235 | 17..1044 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:16:28 Download gff for
BO10919.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6740646..6740873 | 817..1044 | 99 | <- | Minus |
3L | 6740957..6741639 | 134..816 | 100 | <- | Minus |
3L | 6741702..6741790 | 45..133 | 100 | <- | Minus |
3L | 6741915..6741942 | 17..44 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:09:43 Download gff for
BO10919.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6733746..6733973 | 817..1044 | 99 | <- | Minus |
arm_3L | 6734057..6734739 | 134..816 | 100 | <- | Minus |
arm_3L | 6734802..6734890 | 45..133 | 100 | <- | Minus |
arm_3L | 6735015..6735042 | 17..44 | 100 | | Minus |
BO10919.pep Sequence
Translation from 16 to 1060
> BO10919.pep
MVSTFIGLLDIQSWWEIPCISHFCSLFSSAFDLPDIDIEDLESALLSDGT
SDEDQVALVPELIVRLLKGCDALQTVAKEITHSNYQMFLRRFLRQQCRLH
QTENHFDTDIDFQSLPVRKRLHILHDLCHFRLDSVDVQVILSNLEADSLR
VEPLGYDAKNSGYWYFYGTRLYREDKATGGSASSSSGSGSGGAGASTGGA
SNSKGIGSNGTVWQVICFTEEDWQNLAAKFKTSTNAKERELFNILDDNFL
PKLPQLFRERERLRRRKLLQVRNSSRIRNIAELKARQEEERQRRERENLY
QDRQNAHWLAPPQQQQQQQQQQQQQQQQSQQRTRRRLARQCSASFLDH
BO10919.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:49:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dikar-PE | 342 | CG42799-PE | 1..342 | 1..342 | 1781 | 100 | Plus |
dikar-PB | 342 | CG32393-PB | 1..342 | 1..342 | 1781 | 100 | Plus |
dikar-PG | 3080 | CG42799-PG | 1..344 | 1..344 | 1753 | 98.3 | Plus |
dikar-PC | 3080 | CG42799-PC | 1..344 | 1..344 | 1753 | 98.3 | Plus |
dikar-PD | 3222 | CG42799-PD | 1..344 | 1..344 | 1753 | 98.3 | Plus |