Clone BO10922 Report

Search the DGRC for BO10922

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:109
Well:22
Vector:pDNR-Dual
Associated Gene/Transcriptcrm-RA
Protein status:BO10922.pep: validated full length
Sequenced Size:2980

Clone Sequence Records

BO10922.3prime Sequence

861 bp (847 high quality bases) assembled on 2006-04-19

> BO10922.3prime
ATGGTCTAGAAAGCTTGCATCTTTCTCCTGCTGCTGCAGCAGGGCGGCGA
TTTCCTGGAACTTGTGCCGAAAGTCCACGCTGCTCTCGCTGATCACCGAC
ATGCTTGACGACGGATCCAGTATATCCCTGGTGGCATCAATCTCATCCAA
ATGCCCCAGCAGCGACGTCAACGAGAAGTCATTGATATTGTCCTCCAGCC
AGCGTGCGTTGGATGTTGAATCTCTGAGCAAGTGCATCGGACTCATGCTG
CCTTGGAAGAAGCTTTGAGTTGTGCTCCCGTCTTGGGCCGCCTCGTTCAG
GGAACTGCTGACGTCCGTCCTGTTGGTGGCCACGCAAATGTCCAGATTGG
GCATGTCTCGAGCGCTGACCTGCGTGGCCTCGTCGTTGAGGAACTCCAAT
GCCCCCTGATCCCCTGGCTCTTGATCCTGTGAAGCGGTCGTGGCATTCAT
GCTGGAATCGGGTTTCGAGCCAGAGGTGCTGATGCCAGCGGAACTTATGC
CATCCACGCGATCAATCGGCTCGAAAAGGCCACTGTGGAGTTGGCGCACA
CTCAGCAGATCGTACGGACGATCGCCAGCGGATGTGGGTGGTAGGAGACG
GCGCTGCACAAGCACCTGACGACTGATCTTTTGCCGTGTGAGCGCTGAGA
GTTGGCGCACAGGATCGATGTTGGATATCGGCCGCCGCACTGGCAGCATC
GGCGTTCGGAAATTGCCCTCAACCATGCCGCCCACTCCGCCGGTGGCCGT
CGCCTCTGCCAGCTGCTGCGCCTTGGTCATCAGGTCCCGCTTGCGATCGC
ACGTGTGGCCGCAGTTGCATTGGCGCTTGCGCACGCGCTCGCTGAGATTG
GCCACGAGTAG

BO10922.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:13:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG2714-PB 2949 crm-RB 2104..2946 861..19 4215 100 Minus
CG2714-PA 2949 crm-RA 2104..2946 861..19 4215 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:05:34
Subject Length Description Subject Range Query Range Score Percent Strand
crm-RA 3780 CG2714-RA 2180..3022 861..19 4215 100 Minus
crm-RB 3837 CG2714-RB 2237..3079 861..19 4215 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:05:27
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2735396..2735769 270..643 1870 100 Plus
X 23542271 X 2735837..2736055 643..861 1095 100 Plus
X 23542271 X 2735176..2735328 117..269 765 100 Plus
X 23542271 X 2735006..2735105 19..118 500 100 Plus
Blast to na_te.dros performed on 2015-02-12 13:05:30 has no hits.

BO10922.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:53:11 Download gff for BO10922.3prime
Subject Subject Range Query Range Percent Splice Strand
crm-PA 2104..2949 18..861 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:11:38 Download gff for BO10922.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2714-PA 2104..2949 18..861 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:33:06 Download gff for BO10922.3prime
Subject Subject Range Query Range Percent Splice Strand
crm-RB 2237..3083 13..861 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:22:56 Download gff for BO10922.3prime
Subject Subject Range Query Range Percent Splice Strand
crm-RB 2237..3083 13..861 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:22:56 Download gff for BO10922.3prime
Subject Subject Range Query Range Percent Splice Strand
X 2735002..2735104 13..117 97 <- Plus
X 2735177..2735328 118..269 100 <- Plus
X 2735396..2735768 270..642 100 <- Plus
X 2735837..2736055 643..861 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:33:06 Download gff for BO10922.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 2629035..2629137 13..117 97 <- Plus
arm_X 2629210..2629361 118..269 100 <- Plus
arm_X 2629870..2630088 643..861 100   Plus
arm_X 2629429..2629801 270..642 100 <- Plus

BO10922.5prime Sequence

878 bp (823 high quality bases) assembled on 2006-04-19

> BO10922.5prime
GAAGTTATCAGTCGACATGGAGGAACTGTCCAAGCAGCCGCCGCCACCCC
CGCTGACGCAGCCGCCGCCGCCGTCGTCATCCGTGTCCATTGAGGAGCCG
CTGCCAAATGGCAAGGGAGGAGGAGCAGTAGTTGTTAACTCGATAGCTAA
GCTGCCCGAGGAGGAGCTCCTCGGCTCGGTGACCATGCACAATTGTCCGG
GAACGCGGGCCAGTGCCCGGGTCATACAGAAGATGAAGCAGGACCAGACG
CGCCCGATGACACCGCCGCCCAGCGAACGGGAGCCGAACAAAAAGGAGGA
GAAGGCCGCCCAAAAGACGCCCAGCCAGCTGAAGACGGGCAGCGGGAAGA
CCACCTGGACGAATGTGGAGCGCAACTGCTTCTTCGACGCCCTCAACGAA
TTCGGCAAGGACTTCGAGGCGGTGGCCAACTGCATCAATGCCAAGCTGAA
GCGCCGCAATGCCAACAGCGACTATAGTTTCAAAACCAAGGACCAAGTTC
GCCAGCACTATTACCAGACCCATCACAAGATTTGCAAATATGTGCGCTTC
TCGGAGGAACTGAAAAAGCCCGCCCAGGAGTTGTACACGCTGATCAACTA
CGGCGAGATGCGGCGCAAGCTGCAGTTCCTCACGGAGAAGCACTTCATGA
AGCTGAAGCAGCTGGTCTACCAGGGCCAAATAACCGTGCGTTGCAAGGGC
AAGAACATTCGCATTAAGACGCCATCGTGCAAGGCGCTCCGGCGGCTAAA
TCAATTGGATGACTCACTGGAGGATATCCGGCTGCCCAGCAAGGTGGAGG
TGCTGGTGACTCCCGCCAATATGGAGGCCTTCGGACGCGTCCAGTCACTG
GCGCAGAATCCACGCGGCAGGATCATAG

BO10922.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:13:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG2714-PB 2949 crm-RB 1..862 17..878 4310 100 Plus
CG2714-PA 2949 crm-RA 1..862 17..878 4310 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:35:37
Subject Length Description Subject Range Query Range Score Percent Strand
crm-RA 3780 CG2714-RA 75..938 15..878 4320 100 Plus
crm-RB 3837 CG2714-RB 132..995 15..878 4320 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:35:32
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2737922..2738464 557..15 2715 100 Minus
X 23542271 X 2737470..2737674 761..557 1025 100 Minus
X 23542271 X 2737297..2737414 878..761 590 100 Minus
Blast to na_te.dros performed on 2015-02-12 01:35:35 has no hits.

BO10922.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:53:12 Download gff for BO10922.5prime
Subject Subject Range Query Range Percent Splice Strand
crm-PA 1..862 17..878 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:11:41 Download gff for BO10922.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2714-PA 1..862 17..878 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:21:22 Download gff for BO10922.5prime
Subject Subject Range Query Range Percent Splice Strand
crm-RB 124..995 7..878 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:35:01 Download gff for BO10922.5prime
Subject Subject Range Query Range Percent Splice Strand
crm-RB 124..995 7..878 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:35:01 Download gff for BO10922.5prime
Subject Subject Range Query Range Percent Splice Strand
X 2737297..2737413 762..878 100 <- Minus
X 2737470..2737673 558..761 100 <- Minus
X 2737922..2738472 7..557 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:21:22 Download gff for BO10922.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 2631330..2631446 762..878 100 <- Minus
arm_X 2631503..2631706 558..761 100 <- Minus
arm_X 2631955..2632505 7..557 99   Minus

BO10922.complete Sequence

2980 bp (2980 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ631924

> BO10922.complete
GAAGTTATCAGTCGACATGGAGGAACTGTCCAAGCAGCCGCCGCCACCCC
CGCTGACGCAGCCGCCGCCGCCGTCGTCATCCGTGTCCATTGAGGAGCCG
CTGCCAAATGGCAAGGGAGGAGGAGCAGTAGTTGTTAACTCGATAGCTAA
GCTGCCCGAGGAGGAGCTCCTCGGCTCGGTGACCATGCACAATTGTCCGG
GAACGCGGGCCAGTGCCCGGGTCATACAGAAGATGAAGCAGGACCAGACG
CGCCCGATGACACCGCCGCCCAGCGAACGGGAGCCGAACAAAAAGGAGGA
GAAGGCCGCCCAAAAGACGCCCAGCCAGCTGAAGACGGGCAGCGGGAAGA
CCACCTGGACGAATGTGGAGCGCAACTGCTTCTTCGACGCCCTCAACGAA
TTCGGCAAGGACTTCGAGGCGGTGGCCAACTGCATCAATGCCAAGCTGAA
GCGCCGCAATGCCAACAGCGACTATAGTTTCAAAACCAAGGACCAAGTTC
GCCAGCACTATTACCAGACCCATCACAAGATTTGCAAATATGTGCGCTTC
TCGGAGGAACTGAAAAAGCCCGCCCAGGAGTTGTACACGCTGATCAACTA
CGGCGAGATGCGGCGCAAGCTGCAGTTCCTCACGGAGAAGCACTTCATGA
AGCTGAAGCAGCTGGTCTACCAGGGCCAAATAACCGTGCGTTGCAAGGGC
AAGAACATTCGCATTAAGACGCCATCGTGCAAGGCGCTCCGGCGGCTAAA
TCAATTGGATGACTCACTGGAGGATATCCGGCTGCCCAGCAAGGTGGAGG
TGCTGGTGACTCCCGCCAATATGGAGGCCTTCGGACGCGTCCAGTCACTG
GCGCAGAATCCACGCGGCAGGATCATAGTTCCGCTGCACAAGAAACTAAT
CAGCTTCATCAAGACGTTCGAGTACAAATGGCGCAGCGCCAATCAGCGTT
TGCACGAGGAGAAGAGTGCATACTTTTCCAGCAGCCTGCCATCTGCTGCG
TCCAACAACAATAACAACAACAATGAAACGGAACCATTACAGCCGTCAGT
TGCATCGCTGGATCCCTCAATGTGCTTCCAGCCCCGGCCGGGAGTGGCCA
TCCACCGACCTTTGCTCAGCATCACCGCCTACCTAAGCAGCATCAGTATT
TGCTTGACGGCATACGAGGAGCGCATGGGCTTCAAAGTGCGCAGCGAGAC
CTTGGGCAATTTGGCCGGCATGTCGGTGGCGGCCAACAAGCGACTACGAA
CGGAAAGCGGCTCCGAGAAGCGTTCGCCGGAGACAAAGAAACCCAAATCG
AGTGCCAGCCCGCCGCTGGAGAAGAGTTTGGACGACGGGCCCTTGGAGGG
CAATCTGATGAAGATGGAGAATAGCAGCGGTGATGAGCTGGGCGAGGAGA
TTCATGAGTTTCTGGGCGATATATTGGAGGCCATGCAGCATCCGCAAGCA
GCCACTATTCCAGCTCTTTCGGCCACCACTGGTGATACCACAACTGTTGC
TGTTGCGCTTGAAACATCGCACGATCCTGTACAACAGGCTTATCCGGCCA
ACGCGGATCTATCTAATGCCATGGCGACATCTGTTCTACAAACTTCCTGT
GCTGCAGCTCCCGCTCCTTCGACTCCTGTAACCGGTTCTTTGGCGGCTCC
ATCCGTAGCCCGCTCCAAACGCAAAGAAGCTAAGGAGGCGGCGGCCGCGG
CACAGGCTCGAAATTTTAAGCCACTGCTCAGCGACGATATACTGAAGAGA
ATCCGCAAGGGCTGGACGCAGGCGAATGCGGCGGATATAACCATCGGTGA
TCTGTATGTCGTTTTTGGCCAGGATTCCAAGCTGGAGCTGGAGTATTATT
GGTGTGAGGTCGACAGTTCGACGGCCATGGCATCCAGCATACTAACAATC
AACACGGTAACGCCTAGCTCCTCGTCGGTGGCCACCCAAACCGGCAGCGC
CGCCTCGAACGCCAACCAAACAGGCGCATCTTCCAACTGCTACGTCAGCG
CATCGAGCAATTCGAGCACCTCGAGCACTTCGCTGCCCTACAATCCCAAC
GACTGTGATAGCGTGGAACGCGTCAGGGCCGTCACCACATCGTCGGTGAG
CAACAAGCTGAAGCACCTGCTACTCGTGGCCAATCTCAGCGAGCGCGTGC
GCAAGCGCCAATGCAACTGCGGCCACACGTGCGATCGCAAGCGGGACCTG
ATGACCAAGGCGCAGCAGCTGGCAGAGGCGACGGCCACCGGCGGAGTGGG
CGGCATGGTTGAGGGCAATTTCCGAACGCCGATGCTGCCAGTGCGGCGGC
CGATATCCAACATCGATCCTGTGCGCCAACTCTCAGCGCTCACACGGCAA
AAGATCAGTCGTCAGGTGCTTGTGCAGCGCCGTCTCCTACCACCCACATC
CGCTGGCGATCGTCCGTACGATCTGCTGAGTGTGCGCCAACTCCACAGTG
GCCTTTTCGAGCCGATTGATCGCGTGGATGGCATAAGTTCCGCTGGCATC
AGCACCTCTGGCTCGAAACCCGATTCCAGCATGAATGCCACGACCGCTTC
ACAGGATCAAGAGCCAGGGGATCAGGGGGCATTGGAGTTCCTCAACGACG
AGGCCACGCAGGTCAGCGCTCGAGACATGCCCAATCTGGACATTTGCGTG
GCCACCAACAGGACGGACGTCAGCAGTTCCCTGAACGAGGCGGCCCAAGA
CGGGAGCACAACTCAAAGCTTCTTCCAAGGCAGCATGAGTCCGATGCACT
TGCTCAGAGATTCAACATCCAACGCACGCTGGCTGGAGGACAATATCAAT
GACTTCTCGTTGACGTCGCTGCTGGGGCATTTGGATGAGATTGATGCCAC
CAGGGATATACTGGATCCGTCGTCAAGCATGTCGGTGATCAGCGAGAGCA
GCGTGGACTTTCGGCACAAGTTCCAGGAAATCGCCGCCCTGCTGCAGCAG
CAGGAGAAAGATGCAAGCTTTCTAGACCAT

BO10922.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:32:49
Subject Length Description Subject Range Query Range Score Percent Strand
crm-RA 2949 CG2714-PA 1..2946 17..2962 14730 100 Plus
crm-RB 2949 CG2714-PB 1..2946 17..2962 14730 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:32:50
Subject Length Description Subject Range Query Range Score Percent Strand
crm-RA 3780 CG2714-RA 75..3022 15..2962 14740 100 Plus
crm-RB 3837 CG2714-RB 132..3079 15..2962 14740 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:32:48
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2735837..2737414 2338..761 7890 100 Minus
X 23542271 X 2737922..2738464 557..15 2715 100 Minus
X 23542271 X 2735396..2735769 2711..2338 1870 100 Minus
X 23542271 X 2737470..2737674 761..557 1025 100 Minus
X 23542271 X 2735176..2735328 2864..2712 765 100 Minus
X 23542271 X 2735006..2735105 2962..2863 500 100 Minus
Blast to na_te.dros performed on 2014-11-27 23:32:49 has no hits.

BO10922.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:56:07 Download gff for BO10922.complete
Subject Subject Range Query Range Percent Splice Strand
crm-RA 1..2949 17..2963 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:13:05 Download gff for BO10922.complete
Subject Subject Range Query Range Percent Splice Strand
crm-RA 67..3026 7..2968 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:31:20 Download gff for BO10922.complete
Subject Subject Range Query Range Percent Splice Strand
crm-RB 134..3079 17..2964 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:56:07 Download gff for BO10922.complete
Subject Subject Range Query Range Percent Splice Strand
crm-RA 67..3026 7..2968 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:02:55 Download gff for BO10922.complete
Subject Subject Range Query Range Percent Splice Strand
crm-RB 134..3079 17..2964 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:02:55 Download gff for BO10922.complete
Subject Subject Range Query Range Percent Splice Strand
X 2735002..2735104 2864..2964 98 <- Minus
X 2735177..2735328 2712..2863 100 <- Minus
X 2735396..2735768 2339..2711 100 <- Minus
X 2735837..2737413 762..2338 100 <- Minus
X 2737470..2737673 558..761 100 <- Minus
X 2737922..2738462 17..557 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:31:20 Download gff for BO10922.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 2629035..2629137 2864..2964 98 <- Minus
arm_X 2629210..2629361 2712..2863 100 <- Minus
arm_X 2629429..2629801 2339..2711 100 <- Minus
arm_X 2629870..2631446 762..2338 100 <- Minus
arm_X 2631503..2631706 558..761 100 <- Minus
arm_X 2631955..2632495 17..557 100   Minus

BO10922.pep Sequence

Translation from 16 to 2980

> BO10922.pep
MEELSKQPPPPPLTQPPPPSSSVSIEEPLPNGKGGGAVVVNSIAKLPEEE
LLGSVTMHNCPGTRASARVIQKMKQDQTRPMTPPPSEREPNKKEEKAAQK
TPSQLKTGSGKTTWTNVERNCFFDALNEFGKDFEAVANCINAKLKRRNAN
SDYSFKTKDQVRQHYYQTHHKICKYVRFSEELKKPAQELYTLINYGEMRR
KLQFLTEKHFMKLKQLVYQGQITVRCKGKNIRIKTPSCKALRRLNQLDDS
LEDIRLPSKVEVLVTPANMEAFGRVQSLAQNPRGRIIVPLHKKLISFIKT
FEYKWRSANQRLHEEKSAYFSSSLPSAASNNNNNNNETEPLQPSVASLDP
SMCFQPRPGVAIHRPLLSITAYLSSISICLTAYEERMGFKVRSETLGNLA
GMSVAANKRLRTESGSEKRSPETKKPKSSASPPLEKSLDDGPLEGNLMKM
ENSSGDELGEEIHEFLGDILEAMQHPQAATIPALSATTGDTTTVAVALET
SHDPVQQAYPANADLSNAMATSVLQTSCAAAPAPSTPVTGSLAAPSVARS
KRKEAKEAAAAAQARNFKPLLSDDILKRIRKGWTQANAADITIGDLYVVF
GQDSKLELEYYWCEVDSSTAMASSILTINTVTPSSSSVATQTGSAASNAN
QTGASSNCYVSASSNSSTSSTSLPYNPNDCDSVERVRAVTTSSVSNKLKH
LLLVANLSERVRKRQCNCGHTCDRKRDLMTKAQQLAEATATGGVGGMVEG
NFRTPMLPVRRPISNIDPVRQLSALTRQKISRQVLVQRRLLPPTSAGDRP
YDLLSVRQLHSGLFEPIDRVDGISSAGISTSGSKPDSSMNATTASQDQEP
GDQGALEFLNDEATQVSARDMPNLDICVATNRTDVSSSLNEAAQDGSTTQ
SFFQGSMSPMHLLRDSTSNARWLEDNINDFSLTSLLGHLDEIDATRDILD
PSSSMSVISESSVDFRHKFQEIAALLQQQEKDASFLDH

BO10922.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:53:02
Subject Length Description Subject Range Query Range Score Percent Strand
crm-PA 982 CG2714-PA 1..982 1..982 5010 100 Plus
crm-PB 982 CG2714-PB 1..982 1..982 5010 100 Plus