Clone Sequence Records
BO10927.3prime Sequence
925 bp (817 high quality bases) assembled on 2006-04-19
> BO10927.3prime
ATGGTCTAGAAAGCTTGCTAAGTCCTGAAAGCGACGCACATCCTCCCAAT
AGTGCGATGGCACCTCGAACATCTTGGCGGGGATGTTGTCGCGGAACTCG
AATTTTTGGAACGTCACCTTGGCGGTCACCGTGTGCAGTACGGGTATCTC
AATCTTCACGGGAAAGCCCGTCGGTAGCTTCAGCGTGACGAATTCGCGCA
GCTTGTTGATGTGTTTTAGGGGTGCCACGACTTCCAGAACGTCCAGCAGC
ATATCCACGCTAAGTGGAAAGTCCTTGCTCATGGCTACCGTTGCTCGCAG
CGTCTTGTTGGATTGCTTGTGCACGGGTGTCCGACCCAGTTGCGGGCACT
TACCGACCTCCGCATCGAGATACTGTCGCCAGGTGACTGTGGGAGGCGGC
GGGGCCTGCAGCGAGCTGCGACGCGGCAGCTCCGGCAGTGAGATGCCATT
CGGAGCCGTTGGTGTATTGGTCTCCGGCGGCGTGGCCGTGTGCTGGCTGC
CTAGACTGGAGCGACGCGTATCCGGCTGCTGGCTGGCACCCTTGGTAATA
GTCTCGACAATGGCGCGGTTCTTTTGTAGATCCTCGTGTGACAGGTGTTC
CCGCCTCTTACGCTGCTTCAGGATTAAGCCCTGGATGGTGTAAATTTCGC
ACTGGTATTGGCCCCCAATGAGCTCCTTGCGATTGGCGCGGAATATCCAT
CCGCGTTGCGCCCGTGCGAACTGAATCGTCTTGGTGGACATCTGGGTGGC
CAGTATATCGGTCGACATGAGCACATCCACCTCATCCTCCATGTCTGATT
CCTCGTATCGCAGCCGCTGAAAGCATTCCTGCTCATTGTCCAACAGAACC
AGCGATTCCCTTGCCGGCGCCTCACCTCTAAACAAGAACGATATGTCCCC
TCGCTCCCAACGCATATCATTGAAG
BO10927.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:13:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5742-PA | 1632 | CG5742-RA | 723..1629 | 925..19 | 4535 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 17:28:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5742-RC | 2947 | CG5742-RC | 826..1732 | 925..19 | 4535 | 100 | Minus |
| CG5742-RB | 3060 | CG5742-RB | 826..1732 | 925..19 | 4535 | 100 | Minus |
| CG5742-RA | 2947 | CG5742-RA | 826..1732 | 925..19 | 4535 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 17:28:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18149679..18150585 | 19..925 | 4535 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 17:28:53 has no hits.
BO10927.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:53:21 Download gff for
BO10927.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5742-PA | 723..1632 | 16..925 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:11:54 Download gff for
BO10927.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5742-PA | 723..1632 | 16..925 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:32:39 Download gff for
BO10927.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5742-RA | 826..1732 | 19..925 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:32:00 Download gff for
BO10927.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5742-RA | 826..1732 | 19..925 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:32:00 Download gff for
BO10927.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18149679..18150585 | 19..925 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:32:39 Download gff for
BO10927.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14037184..14038090 | 19..925 | 100 | | Plus |
BO10927.5prime Sequence
912 bp (822 high quality bases) assembled on 2006-04-19
> BO10927.5prime
GAAGTTATCAGTCGACATGTCCAAAGAAAAGGAGGACGAGTGCGACAAGC
ACAAACAGCAGGCGACGGCGGACGCCAAGTCCACGTCGAGCGAGGATTCC
GATGAGTACCAATCGGCCGGTGAGGGCGAGGATGGAGACGGCGATGGTGA
CGGTGATTCCCCAGCGGAGCGCCCGCCTGACAAAACCAGCCCCACGGTCG
CCGTTGCGCCCACAGCAAAGGCAGCATCGCCACTGCCCACTGTGAAGCCA
GCATCCGAGGCCCTGGACTTTCCTATGCACCGGAGTGTTTTCGAGGACGA
CATCAAGTCGCTGCAGCGACGACTTCTATTGAGCACGGCCCAAGACGAAG
TGGGTAGAAAGGATAAGCACGGCAATACGCCACTCCATCTGGCCGTAATG
CTGGGCAGAAAGCACGCTGTCCGTTTGCTTCTGGCCCAAAACGCCCCCGT
AAAGATCAAGAACAATGAGGGCTGGTCCCCGCTGTCCGAGGCCATTAGCT
ACGGCGACCGCCAGACAATCACCCAGGTGCTGCGAATGCTAAAGCTGCAG
TCCCGCGAACACATGGAGAGTCGGCGCGAGAAGCTGGTCAATGCGCTGCG
CCAGATGCAGGACTTCTACATGGAATTCAAGTGGGATTTTCAATCATGGC
TGCCACTGGTTTCCCGCATCCTGCCCTCGGACATCTGCCGGCTTTACAAG
TCGGGCGCCTCCATTCGTTTGGACACCACACTGGTGGACTTCAATGATAT
GCGTTGGGAGCGAGGGGACATATCGTTCTTGTTTAGAGGTGAGGCGCCGG
CAAGGGAATCGCTGGTTCTGTTGGACAATGAGCAGGAATGCTTTCAGCGG
CTGCGATACGAGGAATCAGACATGGAGGATGAGGTGGATGTGCTCATGTC
GACCGATATACT
BO10927.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:13:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5742-PA | 1632 | CG5742-RA | 1..896 | 17..912 | 4480 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:25:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5742-RC | 2947 | CG5742-RC | 101..999 | 14..912 | 4495 | 100 | Plus |
| CG5742-RB | 3060 | CG5742-RB | 101..999 | 14..912 | 4495 | 100 | Plus |
| CG5742-RA | 2947 | CG5742-RA | 101..999 | 14..912 | 4495 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:25:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18150412..18151310 | 912..14 | 4495 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 08:25:15 has no hits.
BO10927.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:53:22 Download gff for
BO10927.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5742-PA | 1..896 | 17..912 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:11:55 Download gff for
BO10927.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5742-PA | 1..896 | 17..912 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:36:21 Download gff for
BO10927.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5742-RA | 101..999 | 14..912 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:12:27 Download gff for
BO10927.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5742-RA | 101..999 | 14..912 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:12:27 Download gff for
BO10927.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18150412..18151310 | 14..912 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:36:21 Download gff for
BO10927.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14037917..14038815 | 14..912 | 100 | | Minus |
BO10927.complete Sequence
1663 bp (1663 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631925
> BO10927.complete
GAAGTTATCAGTCGACATGTCCAAAGAAAAGGAGGACGAGTGCGACAAGC
ACAAACAGCAGGCGACGGCGGACGCCAAGTCCACGTCGAGCGAGGATTCC
GATGAGTACCAATCGGCCGGTGAGGGCGAGGATGGAGACGGCGATGGTGA
CGGTGATTCCCCAGCGGAGCGCCCGCCTGACAAAACCAGCCCCACGGTCG
CCGTTGCGCCCACAGCAAAGGCAGCATCGCCACTGCCCACTGTGAAGCCA
GCATCCGAGGCCCTGGACTTTCCTATGCACCGGAGTGTTTTCGAGGACGA
CATCAAGTCGCTGCAGCGACGACTTCTATTGAGCACGGCCCAAGACGAAG
TGGGTAGAAAGGATAAGCACGGCAATACGCCACTCCATCTGGCCGTAATG
CTGGGCAGAAAGCACGCTGTCCGTTTGCTTCTGGCCCAAAACGCCCCCGT
AAAGATCAAGAACAATGAGGGCTGGTCCCCGCTGTCCGAGGCCATTAGCT
ACGGCGACCGCCAGACAATCACCCAGGTGCTGCGAATGCTAAAGCTGCAG
TCCCGCGAACACATGGAGAGTCGGCGCGAGAAGCTGGTCAATGCGCTGCG
CCAGATGCAGGACTTCTACATGGAATTCAAGTGGGATTTTCAATCATGGC
TGCCACTGGTTTCCCGCATCCTGCCCTCGGACATCTGCCGGCTTTACAAG
TCGGGCGCCTCCATTCGTTTGGACACCACACTGGTGGACTTCAATGATAT
GCGTTGGGAGCGAGGGGACATATCGTTCTTGTTTAGAGGTGAGGCGCCGG
CAAGGGAATCGCTGGTTCTGTTGGACAATGAGCAGGAATGCTTTCAGCGG
CTGCGATACGAGGAATCAGACATGGAGGATGAGGTGGATGTGCTCATGTC
GACCGATATACTGGCCACCCAGATGTCCACCAAGACGATTCAGTTCGCAC
GGGCGCAACGCGGATGGATATTCCGCGCCAATCGCAAGGAGCTCATTGGG
GGCCAATACCAGTGCGAAATTTACACCATCCAGGGCTTAATCCTGAAGCA
GCGTAAGAGGCGGGAACACCTGTCACACGAGGATCTACAAAAGAACCGCG
CCATTGTCGAGACTATTACCAAGGGTGCCAGCCAGCAGCCGGATACGCGT
CGCTCCAGTCTAGGCAGCCAGCACACGGCCACGCCGCCGGAGACCAATAC
ACCAACGGCTCCGAATGGCATCTCACTGCCGGAGCTGCCGCGTCGCAGCT
CGCTGCAGGCCCCGCCGCCTCCCACAGTCACCTGGCGACAGTATCTCGAT
GCGGAGGTCGGTAAGTGCCCGCAACTGGGTCGGACACCCGTGCACAAGCA
ATCCAACAAGACGCTGCGAGCAACGGTAGCCATGAGCAAGGACTTTCCAC
TTAGCGTGGATATGCTGCTGGACGTTCTGGAAGTCGTGGCACCCCTAAAA
CACATCAACAAGCTGCGCGAATTCGTCACGCTGAAGCTACCGACGGGCTT
TCCCGTGAAGATTGAGATACCCGTACTGCACACGGTGACCGCCAAGGTGA
CGTTCCAAAAATTCGAGTTCCGCGACAACATCCCCGCCAAGATGTTCGAG
GTGCCATCGCACTATTGGGAGGATGTGCGTCGCTTTCAGGACTTAGCAAG
CTTTCTAGACCAT
BO10927.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:04:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5742-RC | 1758 | CG5742-PC | 1..1629 | 17..1645 | 8145 | 100 | Plus |
| CG5742-RB | 1632 | CG5742-PB | 1..1629 | 17..1645 | 8145 | 100 | Plus |
| CG5742-RA | 1632 | CG5742-PA | 1..1629 | 17..1645 | 8145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:04:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5742-RC | 2947 | CG5742-RC | 101..1732 | 14..1645 | 8160 | 100 | Plus |
| CG5742-RB | 3060 | CG5742-RB | 101..1732 | 14..1645 | 8160 | 100 | Plus |
| CG5742-RA | 2947 | CG5742-RA | 101..1732 | 14..1645 | 8160 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:04:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18149679..18151310 | 1645..14 | 8160 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:04:01 has no hits.
BO10927.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:48:46 Download gff for
BO10927.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5742-RA | 1..1632 | 17..1648 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:20:04 Download gff for
BO10927.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5742-RA | 78..1709 | 14..1645 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:48:18 Download gff for
BO10927.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5742-RA | 104..1732 | 17..1647 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:48:47 Download gff for
BO10927.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5742-RA | 78..1709 | 14..1645 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:10:18 Download gff for
BO10927.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5742-RA | 104..1732 | 17..1647 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:10:18 Download gff for
BO10927.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18149675..18151307 | 17..1647 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:48:18 Download gff for
BO10927.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14037180..14038812 | 17..1647 | 99 | | Minus |
BO10927.pep Sequence
Translation from 16 to 1663
> BO10927.pep
MSKEKEDECDKHKQQATADAKSTSSEDSDEYQSAGEGEDGDGDGDGDSPA
ERPPDKTSPTVAVAPTAKAASPLPTVKPASEALDFPMHRSVFEDDIKSLQ
RRLLLSTAQDEVGRKDKHGNTPLHLAVMLGRKHAVRLLLAQNAPVKIKNN
EGWSPLSEAISYGDRQTITQVLRMLKLQSREHMESRREKLVNALRQMQDF
YMEFKWDFQSWLPLVSRILPSDICRLYKSGASIRLDTTLVDFNDMRWERG
DISFLFRGEAPARESLVLLDNEQECFQRLRYEESDMEDEVDVLMSTDILA
TQMSTKTIQFARAQRGWIFRANRKELIGGQYQCEIYTIQGLILKQRKRRE
HLSHEDLQKNRAIVETITKGASQQPDTRRSSLGSQHTATPPETNTPTAPN
GISLPELPRRSSLQAPPPPTVTWRQYLDAEVGKCPQLGRTPVHKQSNKTL
RATVAMSKDFPLSVDMLLDVLEVVAPLKHINKLREFVTLKLPTGFPVKIE
IPVLHTVTAKVTFQKFEFRDNIPAKMFEVPSHYWEDVRRFQDLASFLDH
BO10927.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:31:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5742-PC | 585 | CG5742-PC | 1..543 | 1..543 | 2816 | 100 | Plus |
| CG5742-PB | 543 | CG5742-PB | 1..543 | 1..543 | 2816 | 100 | Plus |
| CG5742-PA | 543 | CG5742-PA | 1..543 | 1..543 | 2816 | 100 | Plus |
| CG15118-PE | 630 | CG15118-PE | 10..505 | 84..539 | 495 | 27.1 | Plus |
| CG15118-PB | 637 | CG15118-PB | 10..505 | 84..539 | 495 | 27.1 | Plus |
