Clone BO10929 Report

Search the DGRC for BO10929

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:109
Well:29
Vector:pDNR-Dual
Associated Gene/Transcriptsmg-RA
Protein status:BO10929.pep: validated full length
Sequenced Size:3031

Clone Sequence Records

BO10929.3prime Sequence

841 bp (738 high quality bases) assembled on 2006-04-19

> BO10929.3prime
ATGGTCTAGAAAGCTTGCGAATAGCGTAAAATGTTGATCAAATTTGGCCA
AATTTTCCATCACAACAGCGGCCATGGTCTTCTTTGGTTGTTGCTCCGCA
CTGGACACTCCTCCGCTAAGTTTTCTCTGCTGCTGCTGCTGCTGCGACTG
CTGATTGCGTTCCAATACCAGGTTGTCGTTAGATCCGTTGTTGGTGAGCA
CTCCCTGACCGGGCTTAAAGATCAATTGCTGCGGTTGCTGCGGACCTCCG
GCCACCAGAATAAGATTATTCAGCGACCGGCGATGCGATTGTGGTGGCGT
CTGCTGAGGCAGCGCTGGAAAGTGGTTGTGTTGCTGCAACATCTGTTGCA
TCTGCTGGGGATGATGATGCGACTTACTAGACGGCGGCGGTGGTGGCTGC
TGCTGAGGATTACCCATGAAGCTTGGGTACGAGGAGCTCTTGTACTGCGG
CTGATGGGATGGACCGCCGCCATAGCCGTTGTAGTCAAACTGTGGCAGAG
GCGGCGGAGCCTGCTGCGAATGATGGGGCAGCGGGTGTGGCAGGCAATTT
AGCGAAAAGTTTAGCATGTCGTTGGAGTTTTTGCGGTTGTTAATCCTATC
GTTGCTGCCATTTTTAGTATCGCATTTGCGAGTCTTACCATTCCATCTTG
GCTTGTTAATGTTCCCATTGTTTGGCCCGACGCCGGCTGGCTTGACGTGA
TGCATTTTGGGAACCATGGAGATCTTCATTTTGGACAACTTAAACTTCAG
GTCCTTGAGTTGACTGGCGTGATTCATAAATGCCTCGTTGTGGATAGAGC
GGTCTAGAATCCACATAAGCACACCCAAAGTCTCGTCGTCT

BO10929.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:13:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG5263-PB 3000 smg-RB 2175..2997 841..19 4115 100 Minus
CG5263-PA 3000 smg-RA 2175..2997 841..19 4115 100 Minus
CG5263-PC 3000 smg-RC 2175..2997 841..19 4115 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:46:17
Subject Length Description Subject Range Query Range Score Percent Strand
smg-RE 4465 CG5263-RE 2461..3283 841..19 4115 100 Minus
smg-RC 4562 CG5263-RC 2558..3380 841..19 4115 100 Minus
smg-RA 4670 CG5263-RA 2666..3488 841..19 4115 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:46:09
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8992452..8993043 57..648 2960 100 Plus
3L 28110227 3L 8993099..8993293 647..841 975 100 Plus
3L 28110227 3L 8991499..8991538 19..58 200 100 Plus
Blast to na_te.dros performed on 2015-02-10 17:46:13 has no hits.

BO10929.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:53:25 Download gff for BO10929.3prime
Subject Subject Range Query Range Percent Splice Strand
smg-PC 2175..3000 15..841 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:11:59 Download gff for BO10929.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5263-PC 2175..3000 15..841 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:23:11 Download gff for BO10929.3prime
Subject Subject Range Query Range Percent Splice Strand
smg-RA 2666..3491 15..841 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:59:08 Download gff for BO10929.3prime
Subject Subject Range Query Range Percent Splice Strand
smg-RA 2666..3491 15..841 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:59:08 Download gff for BO10929.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 8991495..8991537 15..57 95 <- Plus
3L 8992453..8993041 58..646 100 <- Plus
3L 8993099..8993293 647..841 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:23:11 Download gff for BO10929.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8984595..8984637 15..57 95 <- Plus
arm_3L 8985553..8986141 58..646 100 <- Plus
arm_3L 8986199..8986393 647..841 100   Plus

BO10929.5prime Sequence

867 bp (833 high quality bases) assembled on 2006-04-19

> BO10929.5prime
GAAGTTATCAGTCGACATGAAGTACGCAACTGGAACTGACAACGCGATGA
CCTCCGGCATCAGCGGCCAAACCAATAACTCTAACAGTGCATCCAACGAG
ATGCAGCCAACCACATCAACGCCTACTGCAGCCCACAAGGAGGCCACATC
AACGGCCACGACGACGGCGACATACGCCAATGGCAATCCCAATTCTAACG
CCAATCCCAGCCAGAGCCAGCCGTCCAATGCGCTGTTTTGCGAGCAGGTG
ACCACAGTGACAAATCTCTTCGAGAAGTGGAACGACTGCGAGCGAACCGT
CGTGATGTACGCGCTGCTCAAGCGGCTGCGCTACCCGAGCCTCAAGTTTC
TACAGTATTCTATCGACAGCAACCTGACCCAGAACCTGGGCACCTCCCAG
ACCAATCTGAGCAGCGTGGTTATTGACATCAATGCCAACAATCCGGTGTA
CCTGCAGAATCTACTCAACGCCTACAAGACGTTCCAGCCATGTGACCTGC
TCGACGCCATGTCCTCCTCGTCGTCCGACAAGGACTCGATGCCATGCTAC
GGCAGTGACTTCCAGATCACCACATCGGCGCAGTGTGACGAGCGGAAGCT
GTATGCCCGCAAGGAGGACATTCTGCATGAAGTACTGAACATGCTGCCTC
TGCTGAAGCCGGGCAATGAGGAGGCCAAGCTTATCTACCTGACCCTTATA
CCAGTTGCCGTCAAGGACACCATGCAGCAAATTGTGCCCACGGAGTTGGT
GCAGCAGATCTTCTCGTACCTACTCATCCATCCAGCTATCACCAGCGAGG
ACAGACGTTCGCTCAACATTTGGCTGCGTCACTTGGAGGATCATATCCAA
GCGGCTGCGGCGGGCCT

BO10929.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:13:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG5263-PB 3000 smg-RB 1..851 17..867 4255 100 Plus
CG5263-PA 3000 smg-RA 1..851 17..867 4255 100 Plus
CG5263-PC 3000 smg-RC 1..851 17..867 4255 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:34:44
Subject Length Description Subject Range Query Range Score Percent Strand
smg-RE 4465 CG5263-RE 283..1137 13..867 4260 99.9 Plus
smg-RD 4927 CG5263-RD 336..1190 13..867 4260 99.9 Plus
smg-RC 4562 CG5263-RC 380..1234 13..867 4260 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:34:38
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8994617..8995471 867..13 4260 99.9 Minus
Blast to na_te.dros performed on 2015-02-10 21:34:41 has no hits.

BO10929.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:53:26 Download gff for BO10929.5prime
Subject Subject Range Query Range Percent Splice Strand
smg-PC 1..851 17..867 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:12:01 Download gff for BO10929.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5263-PC 1..851 17..867 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:51:12 Download gff for BO10929.5prime
Subject Subject Range Query Range Percent Splice Strand
smg-RC 374..1234 6..867 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:38:36 Download gff for BO10929.5prime
Subject Subject Range Query Range Percent Splice Strand
smg-RC 374..1234 6..867 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:38:36 Download gff for BO10929.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 8994617..8995477 6..867 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:51:12 Download gff for BO10929.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8987717..8988577 6..867 99   Minus

BO10929.complete Sequence

3031 bp (3031 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ631927

> BO10929.complete
GAAGTTATCAGTCGACATGAAGTACGCAACTGGAACTGACAACGCGATGA
CCTCCGGCATCAGCGGCCAAACCAATAACTCTAACAGTGCATCCAACGAG
ATGCAGCCAACCACATCAACGCCTACTGCAGCCCACAAGGAGGCCACATC
AACGGCCACGACGACGGCGACATACGCCAATGGCAATCCCAATTCTAACG
CCAATCCCAGCCAGAGCCAGCCGTCCAATGCGCTGTTTTGCGAGCAGGTG
ACCACAGTGACAAATCTCTTCGAGAAGTGGAACGACTGCGAGCGAACCGT
CGTGATGTACGCGCTGCTCAAGCGGCTGCGCTACCCGAGCCTCAAGTTTC
TACAGTATTCTATCGACAGCAACCTGACCCAGAACCTGGGCACCTCCCAG
ACCAATCTGAGCAGCGTGGTTATTGACATCAATGCCAACAATCCGGTGTA
CCTGCAGAATCTACTCAACGCCTACAAGACGTTCCAGCCATGTGACCTGC
TCGACGCCATGTCCTCCTCGTCGTCCGACAAGGACTCGATGCCATGCTAC
GGCAGTGACTTCCAGATCACCACATCGGCGCAGTGTGACGAGCGGAAGCT
GTATGCCCGCAAGGAGGACATTCTGCATGAAGTACTGAACATGCTGCCTC
TGCTGAAGCCGGGCAATGAGGAGGCCAAGCTTATCTACCTGACCCTTATA
CCAGTTGCCGTCAAGGACACCATGCAGCAAATTGTGCCCACGGAGTTGGT
GCAGCAGATCTTCTCGTACCTACTCATCCATCCAGCTATCACCAGCGAGG
ACAGACGTTCGCTCAACATTTGGCTGCGTCACTTGGAGGATCATATCCAA
GCGGCTGCGGCGGGCCTGACAAATCGCAGTTACTTCCTGCAGCCCTCGCC
GCAACTGGTCGCTGGTGGTAGCTCAACAGGCAGTGGTAGCTGTTCCTCTT
CGGCGACCAGCTCTTCGACAGCATCCTGTTCGTCGGTGGCCTCATCCTCG
TTGTGCCCCGCAAGCGGCAGCCGTTCCTCACGCACCAACGACTGGCAAAC
GATCGCCCCGCCCAGCAAGCAATTGCAAAACAAATTGGCCGGTGATTGGC
GTGGCAATGGAGGCGGCAGCTCCAGCGGGTCGATCAATCCACTCTGTGAT
AATCTTAATGGTATTACCCTGAACGAATTAGCTTCTAGTCAGAACAGTCT
CGGCCTGTCGCTGGAGGGCAGCTCTTCCCTGGTCAACGGTGTGGTCGCTG
GTGCAGGCTCTATGTTGGGAATCGCTGGTGGCGACGATCATGACACGTCA
TTTAGCAAGAATGGCACGGAGATTCTCGATTTTGACCCGGTGACGGCGGA
CATGGGTGAGGCCTGTAGTCTGGCCAGCAGTAGCCTTTGTGGACGTAACG
GTGGAAATCCTGTTGAGGATCGATCGCAACCTCCGCCGAATCTTCAGCAG
CAATTGCTTCAGCCTCCTCCCTATGCCTCGATCCTTATGGGAAACGTGGG
CGATCAGTTTGGAGAGATCAACCGGTGGAGCCTGGACAGCAAGATTGCAG
CCCTGAAGACGCGGCGCTCTAACAGCCTCACCACGCAAACGATCTCTAGC
TGTTCCAGCTCGTCTAACTCATCGGTGATCACGGTCAATGACAACTGCTC
CAATTCAACGGAGAATCTGGCACAGTTTGCCAACAAGCCCCGTAGTTTTT
CCTTATCGATTGAGCATCAGCGCGGCGCCTTGATGAACAGCGGTTCCGAT
ACTCGTCTGGATGAATTCAAGCCCAATTATATTAAGTTCCACACGCGCAA
CGTGGGCATGTCGGGAATCGGACTCTGGCTAAAATCCTTGCGTCTGCACA
AGTACATCGAGCTGTTCAAGAACATGACGTACGAGGAAATGCTCTTGATC
ACCGAGGACTTTCTGCAGAGTGTTGGCGTCACCAAGGGCGCCTCCCACAA
GCTTGCCCTTTGCATTGATAAGCTGAAGGAACGGGCCAATATTCTTAACC
GGGTAGAACAAGAACTGCTATCGGGTCAAATGGAGCTGAGCACGGCGGTT
GAGGAGCTAACAAATATTGTGCTGACACCAATGAAGCCACTGGAGTCTCC
AGGACCACCGGAGGAAAACATTGGTCTGCGTTTTCTTAAGGTCATTGACA
TTGTGACCAATACGTTGCAGCAGGATCCGTATGCTGTCCAAGACGACGAG
ACTTTGGGTGTGCTTATGTGGATTCTAGACCGCTCTATCCACAACGAGGC
ATTTATGAATCACGCCAGTCAACTCAAGGACCTGAAGTTTAAGTTGTCCA
AAATGAAGATCTCCATGGTTCCCAAAATGCATCACGTCAAGCCAGCCGGC
GTCGGGCCAAACAATGGGAACATTAACAAGCCAAGATGGAATGGTAAGAC
TCGCAAATGCGATACTAAAAATGGCAGCAACGATAGGATTAACAACCGCA
AAAACTCCAACGACATGCTAAACTTTTCGCTAAATTGCCTGCCACACCCG
CTGCCCCATCATTCGCAGCAGGCTCCGCCGCCTCTGCCACAGTTTGACTA
CAACGGCTATGGCGGCGGTCCATCCCATCAGCCGCAGTACAAGAGCTCCT
CGTACCCAAGCTTCATGGGTAATCCTCAGCAGCAGCCACCACCGCCGCCG
TCTAGTAAGTCGCATCATCATCCCCAGCAGATGCAACAGATGTTGCAGCA
ACACAACCACTTTCCAGCGCTGCCTCAGCAGACGCCACCACAATCGCATC
GCCGGTCGCTGAATAATCTTATTCTGGTGGCCGGAGGTCCGCAGCAACCG
CAGCAATTGATCTTTAAGCCCGGTCAGGGAGTGCTCACCAACAACGGATC
TAACGACAACCTGGTATTGGAACGCAATCAGCAGTCGCAGCAGCAGCAGC
AGCAGAGAAAACTTAGCGGAGGAGTGTCCAGTGCGGAGCAACAACCAAAG
AAGACCATGGCCGCTGTTGTGATGGAAAATTTGGCCAAATTTGATCAACA
TTTTACGCTATTCGCAAGCTTTCTAGACCAT

BO10929.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:32:58
Subject Length Description Subject Range Query Range Score Percent Strand
smg-RE 3000 CG5263-PE 1..2997 17..3013 14985 100 Plus
smg-RC 3000 CG5263-PC 1..2997 17..3013 14985 100 Plus
smg-RA 3000 CG5263-PA 1..2997 17..3013 14985 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:33:00
Subject Length Description Subject Range Query Range Score Percent Strand
smg-RE 4465 CG5263-RE 283..3283 13..3013 14990 100 Plus
smg-RC 4562 CG5263-RC 380..3380 13..3013 14990 100 Plus
smg-RA 4670 CG5263-RA 488..3488 13..3013 14990 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:32:56
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8993099..8995471 2385..13 11850 100 Minus
3L 28110227 3L 8992452..8993043 2975..2384 2960 100 Minus
3L 28110227 3L 8991499..8991538 3013..2974 200 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:32:57 has no hits.

BO10929.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:56:10 Download gff for BO10929.complete
Subject Subject Range Query Range Percent Splice Strand
smg-RC 1..3000 17..3017 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:13:08 Download gff for BO10929.complete
Subject Subject Range Query Range Percent Splice Strand
smg-RC 374..3383 6..3017 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:54:25 Download gff for BO10929.complete
Subject Subject Range Query Range Percent Splice Strand
smg-RA 492..3488 17..3015 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:56:10 Download gff for BO10929.complete
Subject Subject Range Query Range Percent Splice Strand
smg-RC 374..3383 6..3017 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:22:25 Download gff for BO10929.complete
Subject Subject Range Query Range Percent Splice Strand
smg-RA 492..3488 17..3015 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:22:25 Download gff for BO10929.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8991497..8991537 2975..3015 95 <- Minus
3L 8992453..8993041 2386..2974 100 <- Minus
3L 8993099..8995467 17..2385 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:54:25 Download gff for BO10929.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8984597..8984637 2975..3015 95 <- Minus
arm_3L 8985553..8986141 2386..2974 100 <- Minus
arm_3L 8986199..8988567 17..2385 100   Minus

BO10929.pep Sequence

Translation from 16 to 3031

> BO10929.pep
MKYATGTDNAMTSGISGQTNNSNSASNEMQPTTSTPTAAHKEATSTATTT
ATYANGNPNSNANPSQSQPSNALFCEQVTTVTNLFEKWNDCERTVVMYAL
LKRLRYPSLKFLQYSIDSNLTQNLGTSQTNLSSVVIDINANNPVYLQNLL
NAYKTFQPCDLLDAMSSSSSDKDSMPCYGSDFQITTSAQCDERKLYARKE
DILHEVLNMLPLLKPGNEEAKLIYLTLIPVAVKDTMQQIVPTELVQQIFS
YLLIHPAITSEDRRSLNIWLRHLEDHIQAAAAGLTNRSYFLQPSPQLVAG
GSSTGSGSCSSSATSSSTASCSSVASSSLCPASGSRSSRTNDWQTIAPPS
KQLQNKLAGDWRGNGGGSSSGSINPLCDNLNGITLNELASSQNSLGLSLE
GSSSLVNGVVAGAGSMLGIAGGDDHDTSFSKNGTEILDFDPVTADMGEAC
SLASSSLCGRNGGNPVEDRSQPPPNLQQQLLQPPPYASILMGNVGDQFGE
INRWSLDSKIAALKTRRSNSLTTQTISSCSSSSNSSVITVNDNCSNSTEN
LAQFANKPRSFSLSIEHQRGALMNSGSDTRLDEFKPNYIKFHTRNVGMSG
IGLWLKSLRLHKYIELFKNMTYEEMLLITEDFLQSVGVTKGASHKLALCI
DKLKERANILNRVEQELLSGQMELSTAVEELTNIVLTPMKPLESPGPPEE
NIGLRFLKVIDIVTNTLQQDPYAVQDDETLGVLMWILDRSIHNEAFMNHA
SQLKDLKFKLSKMKISMVPKMHHVKPAGVGPNNGNINKPRWNGKTRKCDT
KNGSNDRINNRKNSNDMLNFSLNCLPHPLPHHSQQAPPPLPQFDYNGYGG
GPSHQPQYKSSSYPSFMGNPQQQPPPPPSSKSHHHPQQMQQMLQQHNHFP
ALPQQTPPQSHRRSLNNLILVAGGPQQPQQLIFKPGQGVLTNNGSNDNLV
LERNQQSQQQQQQRKLSGGVSSAEQQPKKTMAAVVMENLAKFDQHFTLFA
SFLDH

BO10929.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:52:38
Subject Length Description Subject Range Query Range Score Percent Strand
smg-PE 999 CG5263-PE 1..999 1..999 5205 100 Plus
smg-PC 999 CG5263-PC 1..999 1..999 5205 100 Plus
smg-PA 999 CG5263-PA 1..999 1..999 5205 100 Plus
smg-PB 999 CG5263-PB 1..999 1..999 5205 100 Plus
smg-PD 1109 CG5263-PD 1..986 1..986 5135 100 Plus