Clone Sequence Records
BO10929.3prime Sequence
841 bp (738 high quality bases) assembled on 2006-04-19
> BO10929.3prime
ATGGTCTAGAAAGCTTGCGAATAGCGTAAAATGTTGATCAAATTTGGCCA
AATTTTCCATCACAACAGCGGCCATGGTCTTCTTTGGTTGTTGCTCCGCA
CTGGACACTCCTCCGCTAAGTTTTCTCTGCTGCTGCTGCTGCTGCGACTG
CTGATTGCGTTCCAATACCAGGTTGTCGTTAGATCCGTTGTTGGTGAGCA
CTCCCTGACCGGGCTTAAAGATCAATTGCTGCGGTTGCTGCGGACCTCCG
GCCACCAGAATAAGATTATTCAGCGACCGGCGATGCGATTGTGGTGGCGT
CTGCTGAGGCAGCGCTGGAAAGTGGTTGTGTTGCTGCAACATCTGTTGCA
TCTGCTGGGGATGATGATGCGACTTACTAGACGGCGGCGGTGGTGGCTGC
TGCTGAGGATTACCCATGAAGCTTGGGTACGAGGAGCTCTTGTACTGCGG
CTGATGGGATGGACCGCCGCCATAGCCGTTGTAGTCAAACTGTGGCAGAG
GCGGCGGAGCCTGCTGCGAATGATGGGGCAGCGGGTGTGGCAGGCAATTT
AGCGAAAAGTTTAGCATGTCGTTGGAGTTTTTGCGGTTGTTAATCCTATC
GTTGCTGCCATTTTTAGTATCGCATTTGCGAGTCTTACCATTCCATCTTG
GCTTGTTAATGTTCCCATTGTTTGGCCCGACGCCGGCTGGCTTGACGTGA
TGCATTTTGGGAACCATGGAGATCTTCATTTTGGACAACTTAAACTTCAG
GTCCTTGAGTTGACTGGCGTGATTCATAAATGCCTCGTTGTGGATAGAGC
GGTCTAGAATCCACATAAGCACACCCAAAGTCTCGTCGTCT
BO10929.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:13:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5263-PB | 3000 | smg-RB | 2175..2997 | 841..19 | 4115 | 100 | Minus |
CG5263-PA | 3000 | smg-RA | 2175..2997 | 841..19 | 4115 | 100 | Minus |
CG5263-PC | 3000 | smg-RC | 2175..2997 | 841..19 | 4115 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:46:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
smg-RE | 4465 | CG5263-RE | 2461..3283 | 841..19 | 4115 | 100 | Minus |
smg-RC | 4562 | CG5263-RC | 2558..3380 | 841..19 | 4115 | 100 | Minus |
smg-RA | 4670 | CG5263-RA | 2666..3488 | 841..19 | 4115 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:46:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8992452..8993043 | 57..648 | 2960 | 100 | Plus |
3L | 28110227 | 3L | 8993099..8993293 | 647..841 | 975 | 100 | Plus |
3L | 28110227 | 3L | 8991499..8991538 | 19..58 | 200 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:46:13 has no hits.
BO10929.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:53:25 Download gff for
BO10929.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
smg-PC | 2175..3000 | 15..841 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:11:59 Download gff for
BO10929.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5263-PC | 2175..3000 | 15..841 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:23:11 Download gff for
BO10929.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
smg-RA | 2666..3491 | 15..841 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:59:08 Download gff for
BO10929.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
smg-RA | 2666..3491 | 15..841 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:59:08 Download gff for
BO10929.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8991495..8991537 | 15..57 | 95 | <- | Plus |
3L | 8992453..8993041 | 58..646 | 100 | <- | Plus |
3L | 8993099..8993293 | 647..841 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:23:11 Download gff for
BO10929.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8984595..8984637 | 15..57 | 95 | <- | Plus |
arm_3L | 8985553..8986141 | 58..646 | 100 | <- | Plus |
arm_3L | 8986199..8986393 | 647..841 | 100 | | Plus |
BO10929.5prime Sequence
867 bp (833 high quality bases) assembled on 2006-04-19
> BO10929.5prime
GAAGTTATCAGTCGACATGAAGTACGCAACTGGAACTGACAACGCGATGA
CCTCCGGCATCAGCGGCCAAACCAATAACTCTAACAGTGCATCCAACGAG
ATGCAGCCAACCACATCAACGCCTACTGCAGCCCACAAGGAGGCCACATC
AACGGCCACGACGACGGCGACATACGCCAATGGCAATCCCAATTCTAACG
CCAATCCCAGCCAGAGCCAGCCGTCCAATGCGCTGTTTTGCGAGCAGGTG
ACCACAGTGACAAATCTCTTCGAGAAGTGGAACGACTGCGAGCGAACCGT
CGTGATGTACGCGCTGCTCAAGCGGCTGCGCTACCCGAGCCTCAAGTTTC
TACAGTATTCTATCGACAGCAACCTGACCCAGAACCTGGGCACCTCCCAG
ACCAATCTGAGCAGCGTGGTTATTGACATCAATGCCAACAATCCGGTGTA
CCTGCAGAATCTACTCAACGCCTACAAGACGTTCCAGCCATGTGACCTGC
TCGACGCCATGTCCTCCTCGTCGTCCGACAAGGACTCGATGCCATGCTAC
GGCAGTGACTTCCAGATCACCACATCGGCGCAGTGTGACGAGCGGAAGCT
GTATGCCCGCAAGGAGGACATTCTGCATGAAGTACTGAACATGCTGCCTC
TGCTGAAGCCGGGCAATGAGGAGGCCAAGCTTATCTACCTGACCCTTATA
CCAGTTGCCGTCAAGGACACCATGCAGCAAATTGTGCCCACGGAGTTGGT
GCAGCAGATCTTCTCGTACCTACTCATCCATCCAGCTATCACCAGCGAGG
ACAGACGTTCGCTCAACATTTGGCTGCGTCACTTGGAGGATCATATCCAA
GCGGCTGCGGCGGGCCT
BO10929.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:13:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5263-PB | 3000 | smg-RB | 1..851 | 17..867 | 4255 | 100 | Plus |
CG5263-PA | 3000 | smg-RA | 1..851 | 17..867 | 4255 | 100 | Plus |
CG5263-PC | 3000 | smg-RC | 1..851 | 17..867 | 4255 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:34:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
smg-RE | 4465 | CG5263-RE | 283..1137 | 13..867 | 4260 | 99.9 | Plus |
smg-RD | 4927 | CG5263-RD | 336..1190 | 13..867 | 4260 | 99.9 | Plus |
smg-RC | 4562 | CG5263-RC | 380..1234 | 13..867 | 4260 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:34:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8994617..8995471 | 867..13 | 4260 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:34:41 has no hits.
BO10929.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:53:26 Download gff for
BO10929.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
smg-PC | 1..851 | 17..867 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:12:01 Download gff for
BO10929.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5263-PC | 1..851 | 17..867 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:51:12 Download gff for
BO10929.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
smg-RC | 374..1234 | 6..867 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:38:36 Download gff for
BO10929.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
smg-RC | 374..1234 | 6..867 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:38:36 Download gff for
BO10929.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8994617..8995477 | 6..867 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:51:12 Download gff for
BO10929.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8987717..8988577 | 6..867 | 99 | | Minus |
BO10929.complete Sequence
3031 bp (3031 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631927
> BO10929.complete
GAAGTTATCAGTCGACATGAAGTACGCAACTGGAACTGACAACGCGATGA
CCTCCGGCATCAGCGGCCAAACCAATAACTCTAACAGTGCATCCAACGAG
ATGCAGCCAACCACATCAACGCCTACTGCAGCCCACAAGGAGGCCACATC
AACGGCCACGACGACGGCGACATACGCCAATGGCAATCCCAATTCTAACG
CCAATCCCAGCCAGAGCCAGCCGTCCAATGCGCTGTTTTGCGAGCAGGTG
ACCACAGTGACAAATCTCTTCGAGAAGTGGAACGACTGCGAGCGAACCGT
CGTGATGTACGCGCTGCTCAAGCGGCTGCGCTACCCGAGCCTCAAGTTTC
TACAGTATTCTATCGACAGCAACCTGACCCAGAACCTGGGCACCTCCCAG
ACCAATCTGAGCAGCGTGGTTATTGACATCAATGCCAACAATCCGGTGTA
CCTGCAGAATCTACTCAACGCCTACAAGACGTTCCAGCCATGTGACCTGC
TCGACGCCATGTCCTCCTCGTCGTCCGACAAGGACTCGATGCCATGCTAC
GGCAGTGACTTCCAGATCACCACATCGGCGCAGTGTGACGAGCGGAAGCT
GTATGCCCGCAAGGAGGACATTCTGCATGAAGTACTGAACATGCTGCCTC
TGCTGAAGCCGGGCAATGAGGAGGCCAAGCTTATCTACCTGACCCTTATA
CCAGTTGCCGTCAAGGACACCATGCAGCAAATTGTGCCCACGGAGTTGGT
GCAGCAGATCTTCTCGTACCTACTCATCCATCCAGCTATCACCAGCGAGG
ACAGACGTTCGCTCAACATTTGGCTGCGTCACTTGGAGGATCATATCCAA
GCGGCTGCGGCGGGCCTGACAAATCGCAGTTACTTCCTGCAGCCCTCGCC
GCAACTGGTCGCTGGTGGTAGCTCAACAGGCAGTGGTAGCTGTTCCTCTT
CGGCGACCAGCTCTTCGACAGCATCCTGTTCGTCGGTGGCCTCATCCTCG
TTGTGCCCCGCAAGCGGCAGCCGTTCCTCACGCACCAACGACTGGCAAAC
GATCGCCCCGCCCAGCAAGCAATTGCAAAACAAATTGGCCGGTGATTGGC
GTGGCAATGGAGGCGGCAGCTCCAGCGGGTCGATCAATCCACTCTGTGAT
AATCTTAATGGTATTACCCTGAACGAATTAGCTTCTAGTCAGAACAGTCT
CGGCCTGTCGCTGGAGGGCAGCTCTTCCCTGGTCAACGGTGTGGTCGCTG
GTGCAGGCTCTATGTTGGGAATCGCTGGTGGCGACGATCATGACACGTCA
TTTAGCAAGAATGGCACGGAGATTCTCGATTTTGACCCGGTGACGGCGGA
CATGGGTGAGGCCTGTAGTCTGGCCAGCAGTAGCCTTTGTGGACGTAACG
GTGGAAATCCTGTTGAGGATCGATCGCAACCTCCGCCGAATCTTCAGCAG
CAATTGCTTCAGCCTCCTCCCTATGCCTCGATCCTTATGGGAAACGTGGG
CGATCAGTTTGGAGAGATCAACCGGTGGAGCCTGGACAGCAAGATTGCAG
CCCTGAAGACGCGGCGCTCTAACAGCCTCACCACGCAAACGATCTCTAGC
TGTTCCAGCTCGTCTAACTCATCGGTGATCACGGTCAATGACAACTGCTC
CAATTCAACGGAGAATCTGGCACAGTTTGCCAACAAGCCCCGTAGTTTTT
CCTTATCGATTGAGCATCAGCGCGGCGCCTTGATGAACAGCGGTTCCGAT
ACTCGTCTGGATGAATTCAAGCCCAATTATATTAAGTTCCACACGCGCAA
CGTGGGCATGTCGGGAATCGGACTCTGGCTAAAATCCTTGCGTCTGCACA
AGTACATCGAGCTGTTCAAGAACATGACGTACGAGGAAATGCTCTTGATC
ACCGAGGACTTTCTGCAGAGTGTTGGCGTCACCAAGGGCGCCTCCCACAA
GCTTGCCCTTTGCATTGATAAGCTGAAGGAACGGGCCAATATTCTTAACC
GGGTAGAACAAGAACTGCTATCGGGTCAAATGGAGCTGAGCACGGCGGTT
GAGGAGCTAACAAATATTGTGCTGACACCAATGAAGCCACTGGAGTCTCC
AGGACCACCGGAGGAAAACATTGGTCTGCGTTTTCTTAAGGTCATTGACA
TTGTGACCAATACGTTGCAGCAGGATCCGTATGCTGTCCAAGACGACGAG
ACTTTGGGTGTGCTTATGTGGATTCTAGACCGCTCTATCCACAACGAGGC
ATTTATGAATCACGCCAGTCAACTCAAGGACCTGAAGTTTAAGTTGTCCA
AAATGAAGATCTCCATGGTTCCCAAAATGCATCACGTCAAGCCAGCCGGC
GTCGGGCCAAACAATGGGAACATTAACAAGCCAAGATGGAATGGTAAGAC
TCGCAAATGCGATACTAAAAATGGCAGCAACGATAGGATTAACAACCGCA
AAAACTCCAACGACATGCTAAACTTTTCGCTAAATTGCCTGCCACACCCG
CTGCCCCATCATTCGCAGCAGGCTCCGCCGCCTCTGCCACAGTTTGACTA
CAACGGCTATGGCGGCGGTCCATCCCATCAGCCGCAGTACAAGAGCTCCT
CGTACCCAAGCTTCATGGGTAATCCTCAGCAGCAGCCACCACCGCCGCCG
TCTAGTAAGTCGCATCATCATCCCCAGCAGATGCAACAGATGTTGCAGCA
ACACAACCACTTTCCAGCGCTGCCTCAGCAGACGCCACCACAATCGCATC
GCCGGTCGCTGAATAATCTTATTCTGGTGGCCGGAGGTCCGCAGCAACCG
CAGCAATTGATCTTTAAGCCCGGTCAGGGAGTGCTCACCAACAACGGATC
TAACGACAACCTGGTATTGGAACGCAATCAGCAGTCGCAGCAGCAGCAGC
AGCAGAGAAAACTTAGCGGAGGAGTGTCCAGTGCGGAGCAACAACCAAAG
AAGACCATGGCCGCTGTTGTGATGGAAAATTTGGCCAAATTTGATCAACA
TTTTACGCTATTCGCAAGCTTTCTAGACCAT
BO10929.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:32:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
smg-RE | 3000 | CG5263-PE | 1..2997 | 17..3013 | 14985 | 100 | Plus |
smg-RC | 3000 | CG5263-PC | 1..2997 | 17..3013 | 14985 | 100 | Plus |
smg-RA | 3000 | CG5263-PA | 1..2997 | 17..3013 | 14985 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:33:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
smg-RE | 4465 | CG5263-RE | 283..3283 | 13..3013 | 14990 | 100 | Plus |
smg-RC | 4562 | CG5263-RC | 380..3380 | 13..3013 | 14990 | 100 | Plus |
smg-RA | 4670 | CG5263-RA | 488..3488 | 13..3013 | 14990 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:32:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8993099..8995471 | 2385..13 | 11850 | 100 | Minus |
3L | 28110227 | 3L | 8992452..8993043 | 2975..2384 | 2960 | 100 | Minus |
3L | 28110227 | 3L | 8991499..8991538 | 3013..2974 | 200 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:32:57 has no hits.
BO10929.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:56:10 Download gff for
BO10929.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
smg-RC | 1..3000 | 17..3017 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:13:08 Download gff for
BO10929.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
smg-RC | 374..3383 | 6..3017 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:54:25 Download gff for
BO10929.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
smg-RA | 492..3488 | 17..3015 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:56:10 Download gff for
BO10929.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
smg-RC | 374..3383 | 6..3017 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:22:25 Download gff for
BO10929.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
smg-RA | 492..3488 | 17..3015 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:22:25 Download gff for
BO10929.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8991497..8991537 | 2975..3015 | 95 | <- | Minus |
3L | 8992453..8993041 | 2386..2974 | 100 | <- | Minus |
3L | 8993099..8995467 | 17..2385 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:54:25 Download gff for
BO10929.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8984597..8984637 | 2975..3015 | 95 | <- | Minus |
arm_3L | 8985553..8986141 | 2386..2974 | 100 | <- | Minus |
arm_3L | 8986199..8988567 | 17..2385 | 100 | | Minus |
BO10929.pep Sequence
Translation from 16 to 3031
> BO10929.pep
MKYATGTDNAMTSGISGQTNNSNSASNEMQPTTSTPTAAHKEATSTATTT
ATYANGNPNSNANPSQSQPSNALFCEQVTTVTNLFEKWNDCERTVVMYAL
LKRLRYPSLKFLQYSIDSNLTQNLGTSQTNLSSVVIDINANNPVYLQNLL
NAYKTFQPCDLLDAMSSSSSDKDSMPCYGSDFQITTSAQCDERKLYARKE
DILHEVLNMLPLLKPGNEEAKLIYLTLIPVAVKDTMQQIVPTELVQQIFS
YLLIHPAITSEDRRSLNIWLRHLEDHIQAAAAGLTNRSYFLQPSPQLVAG
GSSTGSGSCSSSATSSSTASCSSVASSSLCPASGSRSSRTNDWQTIAPPS
KQLQNKLAGDWRGNGGGSSSGSINPLCDNLNGITLNELASSQNSLGLSLE
GSSSLVNGVVAGAGSMLGIAGGDDHDTSFSKNGTEILDFDPVTADMGEAC
SLASSSLCGRNGGNPVEDRSQPPPNLQQQLLQPPPYASILMGNVGDQFGE
INRWSLDSKIAALKTRRSNSLTTQTISSCSSSSNSSVITVNDNCSNSTEN
LAQFANKPRSFSLSIEHQRGALMNSGSDTRLDEFKPNYIKFHTRNVGMSG
IGLWLKSLRLHKYIELFKNMTYEEMLLITEDFLQSVGVTKGASHKLALCI
DKLKERANILNRVEQELLSGQMELSTAVEELTNIVLTPMKPLESPGPPEE
NIGLRFLKVIDIVTNTLQQDPYAVQDDETLGVLMWILDRSIHNEAFMNHA
SQLKDLKFKLSKMKISMVPKMHHVKPAGVGPNNGNINKPRWNGKTRKCDT
KNGSNDRINNRKNSNDMLNFSLNCLPHPLPHHSQQAPPPLPQFDYNGYGG
GPSHQPQYKSSSYPSFMGNPQQQPPPPPSSKSHHHPQQMQQMLQQHNHFP
ALPQQTPPQSHRRSLNNLILVAGGPQQPQQLIFKPGQGVLTNNGSNDNLV
LERNQQSQQQQQQRKLSGGVSSAEQQPKKTMAAVVMENLAKFDQHFTLFA
SFLDH
BO10929.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:52:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
smg-PE | 999 | CG5263-PE | 1..999 | 1..999 | 5205 | 100 | Plus |
smg-PC | 999 | CG5263-PC | 1..999 | 1..999 | 5205 | 100 | Plus |
smg-PA | 999 | CG5263-PA | 1..999 | 1..999 | 5205 | 100 | Plus |
smg-PB | 999 | CG5263-PB | 1..999 | 1..999 | 5205 | 100 | Plus |
smg-PD | 1109 | CG5263-PD | 1..986 | 1..986 | 5135 | 100 | Plus |