Clone BO10930 Report

Search the DGRC for BO10930

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:109
Well:30
Vector:pDNR-Dual
Associated Gene/Transcriptmura-RA
Protein status:BO10930.pep: validated full length
Sequenced Size:2638

Clone Sequence Records

BO10930.3prime Sequence

886 bp (879 high quality bases) assembled on 2006-04-19

> BO10930.3prime
ATGGTCTAGAAAGCTTGCGGCCGCTTGGCTCTGCTGTGGATTGGCGGTGG
CCGCTGAAGCCTCGGAAGTTCCCGCCACTCCGGCACTTCCGCCGGACGTG
CCGCTCAATGCAGCCGCAGCTCCGGCTGTTGCCTGCGACTGTTGCTGCTG
GTCGACGCCGTCGAAGTAGTCGGAGGCATTGCCGCGGCAAATTGGGCAGG
TGCGATTCGATCGCAGCCATTTGTCCACGCACTTGGCGTGGAATTCATGG
GAACAGGGCAGGACGCGCAGTAGCTGACGTAGCTCAAAGTCACACATGCA
CACCACACAGGATGATTGGTCGCCGTTGTGCACCTCCGGGTTGAACTTGT
AGCTGGGCAACTGATCGATCTCATTGCGGGTGAGTCCCCTCGGCTTGGCC
TCACCCAATCGCTCGGCCAGGCTGAGCAGCGCCTCGTAGTTCTCCGTCTC
ATTGGTGTCGCCAGAGCTCAGATCATGTTGGTTATAAGGCGACAGCGGGA
ACATGGCCAGGAAATTGAGCAAGAAGCCAGGGTTGATGATGCCCGACGTA
GCCTGAATCTGGACAGGAGCTTGGTGGGCGGCGAGCGACTGCGGCGGCAG
GACGTGACGATGTCCATGGTTCGCCGTCCAGAAACGCGGTATGCGGCGGT
GGGGCGGGAATGTGCGGCGGTCCGATGAGAAGAGGATCTGCTGCGCGGTG
GTTATCTGGGCGCCGGCAGCGACGGCCGCTGCAGCTGCCGCCGTGGAATG
TAGATGATGGGTGGCGGCCGCTGCCGCCGCTCCGCTCAGCGGCGTGATAT
GGATGCCCGGCGGCAGCTGGTGGGCATGCGGATGAGCATGAGGATGGGCG
TGAGGATGGCCATGGGCACCCGGCGCTTCAATGGGT

BO10930.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:13:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG9381-PA 2607 mura-RA 1737..2604 886..19 4340 100 Minus
CG9381-PB 2607 mura-RB 1737..2604 886..19 4340 100 Minus
CG9381-PC 3522 mura-RC 2652..3519 886..19 4340 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:55:13
Subject Length Description Subject Range Query Range Score Percent Strand
mura-RC 4671 CG9381-RC 2859..3726 886..19 4340 100 Minus
mura-RB 3807 CG9381-RB 1995..2862 886..19 4340 100 Minus
mura-RA 6303 CG9381-RA 1962..2829 886..19 4340 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:55:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9540067..9540445 508..886 1895 100 Plus
3R 32079331 3R 9539099..9539290 19..210 960 100 Plus
3R 32079331 3R 9539818..9540003 323..508 930 100 Plus
3R 32079331 3R 9539363..9539476 211..324 570 100 Plus
Blast to na_te.dros performed on 2015-02-12 00:55:09 has no hits.

BO10930.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:53:27 Download gff for BO10930.3prime
Subject Subject Range Query Range Percent Splice Strand
mura-PA 1737..2607 18..886 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:12:02 Download gff for BO10930.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9381-PC 2652..3522 18..886 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 15:54:34 Download gff for BO10930.3prime
Subject Subject Range Query Range Percent Splice Strand
mura-RA 1962..2829 19..886 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:27:30 Download gff for BO10930.3prime
Subject Subject Range Query Range Percent Splice Strand
mura-RA 1962..2829 19..886 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:27:30 Download gff for BO10930.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 9539099..9539290 19..210 100 <- Plus
3R 9539363..9539475 211..323 100 <- Plus
3R 9539819..9540003 324..508 100 <- Plus
3R 9540068..9540445 509..886 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 15:54:34 Download gff for BO10930.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5364821..5365012 19..210 100 <- Plus
arm_3R 5365085..5365197 211..323 100 <- Plus
arm_3R 5365541..5365725 324..508 100 <- Plus
arm_3R 5365790..5366167 509..886 100   Plus

BO10930.5prime Sequence

910 bp (818 high quality bases) assembled on 2006-04-19

> BO10930.5prime
GAAGTTATCAGTCGACATGCTGAACTCGAATGCCACCGGCGGCAACAATC
ATGGGGGCAGCAGCCGTCGGCCCTTTACCCGCAATTCTTCATCGGTCCGC
TCGCAACGCGGCGGTGGTGGCGGGCTGGGCGGTCGCATGGTATACTCGCC
ACACACACATCCGCACGTCCAGCAGCAGCAACAACAACAACAGCAGCAAC
AGCAACAGGGGCAGCAGCGGTCCAGCAATAACGGCAACAACAACCTGTGG
CTGGGCAACAGTCCGTGGTGCAACGTCAATTTAAACGGTGGCAACAGCGG
CAACAACAATAACAACGGTGGCAACAACAACAATAACAACGGTGGCAACA
TCAGCAGCAACAACAACAGCAACAATGTCAATAACAAAGATGCAAACCCA
AATTGCCACAGCCAAGGTCAGGGACCCGGAAATTCCCCCAATCTTGGCCA
CAATCACCAACGTGGCTACAACAACGGGAATAACAATCGGGGTATCGGGA
ACGGGATCGTAAATGGTAATACCAATGGACCACCCGATTATATGAACTAC
CGACGTGGCGTGTGTCCGGCTCAATCGCGGGACTATTCCGGCAACGGAAA
TGGAAATAACAACGGACATGGCCACAATGGACGTCGGTATATGTCCGATA
ACTTGAACAACCCGTCCTCATCCATGAATGGCCTGATCAATTCCGGACAC
CACCAGCGCAACTACAACGACAGGAACTTGAATAACCACTTTGGAAACTC
CGAACAGAACGGAGGACCCGACCATCGGGATCGAGCTGAGGGTTCTTCGT
ACAACTTTATGCGCAACGGAGGAGGTAGCGGGGGCGGTGGCTACGGACGC
AATGGATCGCATTACCAGCACATGGCCTATGGTAATAACACGGTGCGTCC
ACTTCGACCG

BO10930.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:13:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG9381-PA 2607 mura-RA 1..874 17..890 4370 100 Plus
CG9381-PB 2607 mura-RB 1..874 17..890 4370 100 Plus
CG9381-PC 3522 mura-RC 1304..1789 405..890 2430 100 Plus
CG9381-PC 3522 mura-RC 1..390 17..406 1950 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 04:34:28
Subject Length Description Subject Range Query Range Score Percent Strand
mura-RB 3807 CG9381-RB 258..1153 16..910 4455 99.9 Plus
mura-RA 6303 CG9381-RA 225..1120 16..910 4455 99.9 Plus
mura-RC 4671 CG9381-RC 1507..2017 401..910 2515 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 04:34:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9546798..9547187 405..16 1950 100 Minus
3R 32079331 3R 9541679..9542014 736..401 1665 99.7 Minus
3R 32079331 3R 9541405..9541579 910..737 825 99.4 Minus
Blast to na_te.dros performed 2015-02-10 04:34:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2179..2401 149..386 274 62.8 Plus

BO10930.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:53:28 Download gff for BO10930.5prime
Subject Subject Range Query Range Percent Splice Strand
mura-PA 1..895 17..910 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:12:04 Download gff for BO10930.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9381-PB 1..895 17..910 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:45:41 Download gff for BO10930.5prime
Subject Subject Range Query Range Percent Splice Strand
mura-RA 219..1120 9..910 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 07:23:14 Download gff for BO10930.5prime
Subject Subject Range Query Range Percent Splice Strand
mura-RA 219..1120 9..910 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 07:23:14 Download gff for BO10930.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 9541405..9541579 737..910 99 <- Minus
3R 9541679..9542009 406..736 100 <- Minus
3R 9546798..9547193 9..405 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:45:41 Download gff for BO10930.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5367127..5367301 737..910 99 <- Minus
arm_3R 5367401..5367731 406..736 100 <- Minus
arm_3R 5372520..5372915 9..405 99   Minus

BO10930.complete Sequence

2638 bp (2638 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ631928

> BO10930.complete
GAAGTTATCAGTCGACATGCTGAACTCGAATGCCACCGGCGGCAACAATC
ATGGGGGCAGCAGCCGTCGGCCCTTTACCCGCAATTCTTCATCGGTCCGC
TCGCAACGCGGCGGTGGTGGCGGGCTGGGCGGTCGCATGGTATACTCGCC
ACACACACATCCGCACGTCCAGCAGCAGCAACAACAACAACAGCAGCAAC
AGCAACAGGGGCAGCAGCGGTCCAGCAATAACGGCAACAACAACCTGTGG
CTGGGCAACAGTCCGTGGTGCAACGTCAATTTAAACGGTGGCAACAGCGG
CAACAACAATAACAACGGTGGCAACAACAACAATAACAACGGTGGCAACA
TCAGCAGCAACAACAACAGCAACAATGTCAATAACAAAGATGCAAACCCA
AATTGCCACAGCCAAGGTCAGGGACCCGGAAATTCCCCCAATCTTGGCCA
CAATCACCAACGTGGCTACAACAACGGGAATAACAATCGGGGTATCGGGA
ACGGGATCGTAAATGGTAATACCAATGGACCACCCGATTATATGAACTAC
CGACGTGGCGTGTGTCCGGCTCAATCGCGGGACTATTCCGGCAACGGAAA
TGGAAATAACAACGGACATGGCCACAATGGACGTCGGTATATGTCCGATA
ACTTGAACAACCCGTCCTCATCCATGAATGGCCTGATCAATTCCGGACAC
CACCAGCGCAACTACAACGACAGGAACTTGAATAACCACTTTGGAAACTC
CGAACAGAACGGAGGACCCGACCATCGGGATCGAGCTGAGGGTTCTTCGT
ACAACTTTATGCGCAACGGAGGAGGTAGCGGGGGCGGTGGCTACGGACGC
AATGGATCGCATTACCAGCACATGGCCTATGGTAATAACAACGGTGCGTC
CACTTCGACCGGCGGACCAGGACTTATGGGTGAACTGCCCTCGGGTTCGG
GCCTGTCGGGCTCTTCGCTGTCGCTGAACAACGGACCCGGAGGCCTCAAC
TCCGACAGTCCGTCGCGTAAGCGCCGCCGCATCTCCGGAAGACCCCCGAA
CGGACCACAGCCCCAACACCGTTGTCCGATGGCACACATGCAGCAGGGAA
GTCCGCCACTTAGACGCCCGCGGTTGCGCGATGTGGCTACCTCCACGCAG
CAGCAGCAACAGCAGTACGGCCATCAGGTTCATCATCCTCAGCAGCAGCA
ACAGCAGCCGCCATCCAACTATCACCCGATGCACCATCATCAGCCACAAC
CGCACTACGTTCCTCAGCAGCAGGTGCCACCGCCGCACGTCCAGCGTTCA
CCGTGGGATTTGGGCAGCAGTGGAGGAAGCTCGGGAGGAGCCACCTCCAG
CAGCTCGGTGGGTCCCATTCTGCAGCAGGTGCAGGCGCCGCCGCAGCCAC
CGAGTCACCAGCAAGCGGTTGGCTATCCACAAGCACCGCCACAGCCCGCC
TCCCTGATGGTGGACCTCAATCTGAACCAGGTGCCAGTGAACCTGCAGTT
GCGTCCCTCGGAGCCCTTCTGGGCCTCCTTCTGCACCTATCCTATACCGG
CGCAGGCTAGACTAGCACCCTGTCACTTGCACGGTGTCTACACGCAGCCA
TTCCCCGCCGCCCCACCACCAGGACTGGCCGCTCCTCCACTTCAACAACA
GCATCAGCCACTTATTCAGGCCCAGCAAATGATTTCCCAGGCCACCTTGA
CCGCCCAGCAGCAGCAGCGGGATGTGGTGGCCATTGCAACGGCCAATCTG
GGACCCATTGAAGCGCCGGGTGCCCATGGCCATCCTCACGCCCATCCTCA
TGCTCATCCGCATGCCCACCAGCTGCCGCCGGGCATCCATATCACGCCGC
TGAGCGGAGCGGCGGCAGCGGCCGCCACCCATCATCTACATTCCACGGCG
GCAGCTGCAGCGGCCGTCGCTGCCGGCGCCCAGATAACCACCGCGCAGCA
GATCCTCTTCTCATCGGACCGCCGCACATTCCCGCCCCACCGCCGCATAC
CGCGTTTCTGGACGGCGAACCATGGACATCGTCACGTCCTGCCGCCGCAG
TCGCTCGCCGCCCACCAAGCTCCTGTCCAGATTCAGGCTACGTCGGGCAT
CATCAACCCTGGCTTCTTGCTCAATTTCCTGGCCATGTTCCCGCTGTCGC
CTTATAACCAACATGATCTGAGCTCTGGCGACACCAATGAGACGGAGAAC
TACGAGGCGCTGCTCAGCCTGGCCGAGCGATTGGGTGAGGCCAAGCCGAG
GGGACTCACCCGCAATGAGATCGATCAGTTGCCCAGCTACAAGTTCAACC
CGGAGGTGCACAACGGCGACCAATCATCCTGTGTGGTGTGCATGTGTGAC
TTTGAGCTACGTCAGCTACTGCGCGTCCTGCCCTGTTCCCATGAATTCCA
CGCCAAGTGCGTGGACAAATGGCTGCGATCGAATCGCACCTGCCCAATTT
GCCGCGGCAATGCCTCCGACTACTTCGACGGCGTCGACCAGCAGCAACAG
TCGCAGGCAACAGCCGGAGCTGCGGCTGCATTGAGCGGCACGTCCGGCGG
AAGTGCCGGAGTGGCGGGAACTTCCGAGGCTTCAGCGGCCACCGCCAATC
CACAGCAGAGCCAAGCGGCCGCAAGCTTTCTAGACCAT

BO10930.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:06:03
Subject Length Description Subject Range Query Range Score Percent Strand
mura-RB 2607 CG9381-PB 1..2604 17..2620 13020 100 Plus
mura-RA 2607 CG9381-PA 1..2604 17..2620 13020 100 Plus
mura-RC 3522 CG9381-PC 1300..3519 401..2620 11085 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:06:05
Subject Length Description Subject Range Query Range Score Percent Strand
mura-RB 3807 CG9381-RB 258..2862 16..2620 13025 100 Plus
mura-RA 6303 CG9381-RA 225..2829 16..2620 13025 100 Plus
mura-RC 4671 CG9381-RC 1507..3726 401..2620 11085 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 02:06:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9540584..9541166 1670..1088 2915 100 Minus
3R 32079331 3R 9540067..9540528 2131..1670 2310 100 Minus
3R 32079331 3R 9546798..9547187 405..16 1950 100 Minus
3R 32079331 3R 9541229..9541579 1087..737 1755 100 Minus
3R 32079331 3R 9541679..9542014 736..401 1665 99.7 Minus
3R 32079331 3R 9539099..9539290 2620..2429 960 100 Minus
3R 32079331 3R 9539818..9540003 2316..2131 930 100 Minus
3R 32079331 3R 9539363..9539476 2428..2315 570 100 Minus
Blast to na_te.dros performed 2014-11-27 02:06:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2179..2401 149..386 274 62.8 Plus
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 620..736 1739..1626 118 58.1 Minus

BO10930.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:59:56 Download gff for BO10930.complete
Subject Subject Range Query Range Percent Splice Strand
mura-RB 1..2607 17..2621 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:31:59 Download gff for BO10930.complete
Subject Subject Range Query Range Percent Splice Strand
mura-RB 202..2812 9..2620 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:09:17 Download gff for BO10930.complete
Subject Subject Range Query Range Percent Splice Strand
mura-RA 226..2829 17..2622 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:59:56 Download gff for BO10930.complete
Subject Subject Range Query Range Percent Splice Strand
mura-RB 202..2812 9..2620 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:37:22 Download gff for BO10930.complete
Subject Subject Range Query Range Percent Splice Strand
mura-RA 226..2829 17..2622 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:37:22 Download gff for BO10930.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9539097..9539290 2429..2622 98 <- Minus
3R 9539363..9539475 2316..2428 100 <- Minus
3R 9539819..9540003 2131..2315 100 <- Minus
3R 9540068..9540527 1671..2130 100 <- Minus
3R 9540584..9541166 1088..1670 100 <- Minus
3R 9541229..9541579 737..1087 100 <- Minus
3R 9541679..9542009 406..736 100 <- Minus
3R 9546798..9547186 17..405 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:09:17 Download gff for BO10930.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5364819..5365012 2429..2622 98 <- Minus
arm_3R 5365085..5365197 2316..2428 100 <- Minus
arm_3R 5365541..5365725 2131..2315 100 <- Minus
arm_3R 5365790..5366249 1671..2130 100 <- Minus
arm_3R 5366306..5366888 1088..1670 100 <- Minus
arm_3R 5366951..5367301 737..1087 100 <- Minus
arm_3R 5367401..5367731 406..736 100 <- Minus
arm_3R 5372520..5372908 17..405 100   Minus

BO10930.pep Sequence

Translation from 16 to 2638

> BO10930.pep
MLNSNATGGNNHGGSSRRPFTRNSSSVRSQRGGGGGLGGRMVYSPHTHPH
VQQQQQQQQQQQQQGQQRSSNNGNNNLWLGNSPWCNVNLNGGNSGNNNNN
GGNNNNNNGGNISSNNNSNNVNNKDANPNCHSQGQGPGNSPNLGHNHQRG
YNNGNNNRGIGNGIVNGNTNGPPDYMNYRRGVCPAQSRDYSGNGNGNNNG
HGHNGRRYMSDNLNNPSSSMNGLINSGHHQRNYNDRNLNNHFGNSEQNGG
PDHRDRAEGSSYNFMRNGGGSGGGGYGRNGSHYQHMAYGNNNGASTSTGG
PGLMGELPSGSGLSGSSLSLNNGPGGLNSDSPSRKRRRISGRPPNGPQPQ
HRCPMAHMQQGSPPLRRPRLRDVATSTQQQQQQYGHQVHHPQQQQQQPPS
NYHPMHHHQPQPHYVPQQQVPPPHVQRSPWDLGSSGGSSGGATSSSSVGP
ILQQVQAPPQPPSHQQAVGYPQAPPQPASLMVDLNLNQVPVNLQLRPSEP
FWASFCTYPIPAQARLAPCHLHGVYTQPFPAAPPPGLAAPPLQQQHQPLI
QAQQMISQATLTAQQQQRDVVAIATANLGPIEAPGAHGHPHAHPHAHPHA
HQLPPGIHITPLSGAAAAAATHHLHSTAAAAAAVAAGAQITTAQQILFSS
DRRTFPPHRRIPRFWTANHGHRHVLPPQSLAAHQAPVQIQATSGIINPGF
LLNFLAMFPLSPYNQHDLSSGDTNETENYEALLSLAERLGEAKPRGLTRN
EIDQLPSYKFNPEVHNGDQSSCVVCMCDFELRQLLRVLPCSHEFHAKCVD
KWLRSNRTCPICRGNASDYFDGVDQQQQSQATAGAAAALSGTSGGSAGVA
GTSEASAATANPQQSQAAASFLDH

BO10930.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:47:55
Subject Length Description Subject Range Query Range Score Percent Strand
mura-PB 868 CG9381-PB 1..868 1..868 4757 100 Plus
mura-PA 868 CG9381-PA 1..868 1..868 4757 100 Plus
mura-PC 1173 CG9381-PC 344..1173 43..868 4088 91.1 Plus
mura-PC 1173 CG9381-PC 1..446 1..474 799 41.6 Plus
glo-PA 586 CG6946-PA 221..475 20..312 227 29.6 Plus
glo-PB 586 CG6946-PB 221..475 20..312 227 29.6 Plus
glo-PA 586 CG6946-PA 275..578 8..280 190 27.6 Plus
glo-PA 586 CG6946-PA 251..453 91..331 173 28.2 Plus