Clone Sequence Records
BO10931.3prime Sequence
892 bp (864 high quality bases) assembled on 2006-04-19
> BO10931.3prime
ATGGTCTAGAAAGCTTGCGTCTTGCACCTCTCGATACGGCACCTCCGACG
TGACCGAGAAGGACTCGAAGTAGTGGTTCAAGAACTCGAATGTCGGCCGC
TTCTCGGGCACAGCATCCCAGCACTGGAGCAGCAGCTGATAAATGTTGTC
CGGGAAGTAGTGATTCGTTGGCTTCGGCATGCGGAAACCGCGCTCGATGT
TCTCAATCACCTCGCGACTATGCATGCCCGGATAGGGCACTTGTCCGTAC
GTGAACAGCTCCATCAGCAGAATGCCATAGGACCACACGTCCGACTTGAT
CGAGAACTTGCCGTAGATGATCGCCTCGGGCGCCGTCCACTTGACCGGAA
ACCGGGATCCCTGCTTGGGGCAGTACTCGTCATCCGCGATGACACGCGCC
AGTCCAAAATCACAAATCTTCGCCACATTATTCTCTCCGATCAGCACATT
ACGGGCCGCCAGATCGCGATGGATGAGCTGCTTGGACTCTAGATACTCCA
TACCGCTGGCCACCTGGGTGGCTATGTAGATGAGATCTTCGAAGTGCAAG
TAGCGGCCATCGCCCTCGCGCAAGAAGTCCAGCAGACTGCCCTTGGACAT
GTACTCCTGCACGATGTAAATGGGCTCCTCCTGCGAGCAAACGGCATAGA
GGGCCACCAGGCGGTTGTGTCGGAACTTCTTCATAATCGCGGCCTCCTGA
AGGAAAGCAGCCGTGGACATGGTGCCTTCGCGCAGCGTTTTGACCGCCAC
ATCGATGCTGTTGCGCCATTTGCCGTAGAAGACCTCGCCAAAGTTGCCGC
GTCCCAGTTTGCGCAGCAGCTGAATCTCCGAGCGCGGAATCTCGTACTTA
TCGCGCAGCTCCGGACCCCAGTCCCACATCTGGGGCTGCGGT
BO10931.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:13:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7524-PE | 1659 | Src64B-RE | 783..1656 | 892..19 | 4345 | 99.8 | Minus |
| CG7524-PF | 1659 | Src64B-RF | 783..1656 | 892..19 | 4345 | 99.8 | Minus |
| CG7524-PC | 1659 | Src64B-RC | 783..1656 | 892..19 | 4345 | 99.8 | Minus |
| CG7524-PD | 1659 | Src64B-RD | 783..1656 | 892..19 | 4345 | 99.8 | Minus |
| CG7524-PB | 1659 | Src64B-RB | 783..1656 | 892..19 | 4345 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:39:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Src64B-RD | 2815 | CG7524-RD | 1814..2687 | 892..19 | 4355 | 99.9 | Minus |
| Src64B-RC | 2567 | CG7524-RC | 1566..2439 | 892..19 | 4355 | 99.9 | Minus |
| Src64B-RI | 4338 | CG7524-RI | 1716..2589 | 892..19 | 4355 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:39:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4594644..4595263 | 19..638 | 3085 | 99.8 | Plus |
| 3L | 28110227 | 3L | 4595316..4595578 | 630..892 | 1300 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:39:47 has no hits.
BO10931.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:53:29 Download gff for
BO10931.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7524-PC | 783..1659 | 15..892 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:12:05 Download gff for
BO10931.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7524-PB | 783..1659 | 15..892 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 02:02:28 Download gff for
BO10931.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Src64B-RI | 1716..2592 | 15..892 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:19:07 Download gff for
BO10931.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Src64B-RI | 1716..2592 | 15..892 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:19:07 Download gff for
BO10931.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4595317..4595578 | 631..892 | 99 | | Plus |
| 3L | 4594640..4595255 | 15..630 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 02:02:28 Download gff for
BO10931.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4594640..4595255 | 15..630 | 99 | <- | Plus |
| arm_3L | 4595317..4595578 | 631..892 | 99 | | Plus |
BO10931.5prime Sequence
878 bp (791 high quality bases) assembled on 2006-04-19
> BO10931.5prime
GAAGTTATCAGTCGACATGGGCAACAAATGCTGCAGCAAGCGACAGGATC
AGGAACTGGCACTGGCCTATCCCACTGGGGGCTACAAGAAATCCGACTAC
ACCTTTGGCCAGACGCACATCAACAGCAGCGGCGGCGGCAACATGGGCGG
CGTTCTTGGCCAGAAGCATAACAACGGTGGCTCGCTGGACTCGCGCTACA
CGCCCGATCCCAATCATCGGGGTCCGTTGAAAATCGGCGGAAAGGGCGGC
GTTGACATCATCAGACCACGCACCACACCAACCGGTGTTCCTGGTGTCGT
GCTCAAGCGCGTTGTCGTGGCCCTGTACGACTATAAATCCCGCGATGAAT
CCGATCTGAGCTTCATGAAGGGTGACCGCATGGAGGTCATCGACGACACC
GAGTCCGATTGGTGGCGCGTCGTGAACCTAACCACCCGGCAGGAGGGCCT
CATCCCGCTCAATTTCGTGGCGGAGGAGCGCAGCGTGAACAGCGAAGACT
GGTTCTTTGAGAATGTGCTACGAAAGGAGGCGGACAAGTTGCTGCTGGCC
GAGGAGAATCCGCGTGGCACTTTCCTCGTGCGACCTTCAGAGCACAATCC
CAATGGCTACTCGCTGTCGGTGAAGGATTGGGAGGATGGACGTGGATACC
ATGTGAAGCACTACCGTATCAAGCCACTGGATAATGGCGGCTACTACATA
GCCACCAATCAGACTTTCCCCTCGCTTCAGGCCTTGGTCATGGCATACAG
CAAAAACGCTCTTGGCCTGTGTCACATATTGTCGCGTCCCTGCCCCCAAC
CGCAGCCCCAGATGTGGGACTTGGGTCCGGAGCTGCGCGATAAGTACGAG
ATTCCGCGCTCGGAGATTCAGCTGCTGC
BO10931.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:13:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7524-PE | 1659 | Src64B-RE | 1..862 | 17..878 | 4285 | 99.8 | Plus |
| CG7524-PF | 1659 | Src64B-RF | 1..862 | 17..878 | 4285 | 99.8 | Plus |
| CG7524-PC | 1659 | Src64B-RC | 1..862 | 17..878 | 4285 | 99.8 | Plus |
| CG7524-PD | 1659 | Src64B-RD | 1..862 | 17..878 | 4285 | 99.8 | Plus |
| CG7524-PB | 1659 | Src64B-RB | 1..862 | 17..878 | 4285 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:47:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Src64B-RD | 2815 | CG7524-RD | 1031..1893 | 16..878 | 4300 | 99.9 | Plus |
| Src64B-RC | 2567 | CG7524-RC | 783..1645 | 16..878 | 4300 | 99.9 | Plus |
| Src64B-RI | 4338 | CG7524-RI | 933..1795 | 16..878 | 4300 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:47:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4598154..4598419 | 281..16 | 1330 | 100 | Minus |
| 3L | 28110227 | 3L | 4595692..4595945 | 752..499 | 1270 | 100 | Minus |
| 3L | 28110227 | 3L | 4596064..4596284 | 498..278 | 1090 | 99.5 | Minus |
| 3L | 28110227 | 3L | 4595499..4595624 | 878..753 | 615 | 99.2 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:47:27 has no hits.
BO10931.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:53:30 Download gff for
BO10931.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7524-PC | 1..862 | 17..878 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:12:07 Download gff for
BO10931.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7524-PB | 1..862 | 17..878 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:52:19 Download gff for
BO10931.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Src64B-RI | 930..1795 | 10..878 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:41:55 Download gff for
BO10931.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Src64B-RI | 930..1795 | 10..878 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:41:55 Download gff for
BO10931.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4595499..4595624 | 753..878 | 99 | <- | Minus |
| 3L | 4595692..4595945 | 499..752 | 100 | <- | Minus |
| 3L | 4596064..4596280 | 282..498 | 100 | <- | Minus |
| 3L | 4598154..4598422 | 10..281 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:52:19 Download gff for
BO10931.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4595499..4595624 | 753..878 | 99 | <- | Minus |
| arm_3L | 4595692..4595945 | 499..752 | 100 | <- | Minus |
| arm_3L | 4596064..4596280 | 282..498 | 100 | <- | Minus |
| arm_3L | 4598154..4598422 | 10..281 | 98 | | Minus |
BO10931.complete Sequence
1690 bp assembled on 2009-08-24
GenBank Submission: KX796096
> BO10931.complete
GAAGTTATCAGTCGACATGGGCAACAAATGCTGCAGCAAGCGACAGGATC
AGGAACTGGCACTGGCCTATCCCACTGGGGGCTACAAGAAATCCGACTAC
ACCTTTGGCCAGACGCACATCAACAGCAGCGGCGGCGGCAACATGGGCGG
CGTTCTTGGCCAGAAGCATAACAACGGTGGCTCGCTGGACTCGCGCTACA
CGCCCGATCCCAATCATCGGGGTCCGTTGAAAATCGGCGGAAAGGGCGGC
GTTGACATCATCAGACCACGCACCACACCAACCGGTGTTCCTGGTGTCGT
GCTCAAGCGCGTTGTCGTGGCCCTGTACGACTATAAATCCCGCGATGAAT
CCGATCTGAGCTTCATGAAGGGTGACCGCATGGAGGTCATCGACGACACC
GAGTCCGATTGGTGGCGCGTCGTGAACCTAACCACCCGGCAGGAGGGCCT
CATCCCGCTCAATTTCGTGGCGGAGGAGCGCAGCGTGAACAGCGAAGACT
GGTTCTTTGAGAATGTGCTACGAAAGGAGGCGGACAAGTTGCTGCTGGCC
GAGGAGAATCCGCGTGGCACTTTCCTCGTGCGACCTTCAGAGCACAATCC
CAATGGCTACTCGCTGTCGGTGAAGGATTGGGAGGATGGACGTGGATACC
ATGTGAAGCACTACCGTATCAAGCCACTGGATAATGGCGGCTACTACATA
GCCACCAATCAGACTTTCCCCTCGCTTCAGGCCTTGGTCATGGCATACAG
CAAAAACGCTCTTGGCCTGTGTCACATATTGTCGCGTCCCTGCCCCAAAC
CGCAGCCCCAGATGTGGGACTTGGGTCCGGAGCTGCGCGATAAGTACGAG
ATTCCGCGCTCGGAGATTCAGCTGCTGCGCAAACTGGGACGCGGCAACTT
TGGCGAGGTCTTCTACGGCAAATGGCGCAACAGCATCGATGTGGCGGTCA
AAACGCTGCGCGAAGGCACCATGTCCACGGCTGCTTTCCTTCAGGAGGCC
GCGATTATGAAGAAGTTCCGACACAACCGCCTGGTGGCCCTCTATGCCGT
TTGCTCGCAGGAGGAGCCCATTTACATCGTGCAGGAGTACATGTCCAAGG
GCAGTCTGCTGGACTTCTTGCGCGAGGGCGATGGCCGCTACTTGCACTTC
GAAGATCTCATCTACATAGCCACCCAGGTGGCCAGCGGTATGGAGTATCT
AGAGTCCAAGCAGCTCATCCATCGCGATCTGGCGGCCCGTAATGTGCTGA
TCGGAGAGAATAATGTGGCGAAGATTTGTGATTTTGGACTGGCGCGTGTC
ATCGCGGATGACGAGTACTGCCCCAAGCAGGGATCCCGGTTTCCGGTCAA
GTGGACGGCGCCCGAGGCGATCATCTACGGCAAGTTCTCGATCAAGTCGG
ACGTGTGGTCCTATGGCATTCTGCTGATGGAGCTGTTCACGTACGGACAA
GTGCCCTATCCGGGCATGCATAGTCGCGAGGTGATTGAGAACATCGAGCG
CGGTTTCCGCATGCCGAAGCCAACGAATCACTACTTCCCGGACAACATTT
ATCAGCTGCTGCTCCAGTGCTGGGATGCTGTGCCCGAGAAGCGGCCGACA
TTCGAGTTCTTGAACCACTACTTCGAGTCCTTCTCGGTCACGTCGGAGGT
GCCGTATCGAGAGGTGCAAGACGCAAGCTTTCTAGACCAT
BO10931.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:33:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Src64B-RD | 1659 | CG7524-PD | 1..1656 | 17..1672 | 8280 | 100 | Plus |
| Src64B-RC | 1659 | CG7524-PC | 1..1656 | 17..1672 | 8280 | 100 | Plus |
| Src64B-RI | 1659 | CG7524-PI | 1..1656 | 17..1672 | 8280 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:33:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Src64B-RD | 2815 | CG7524-RD | 1031..2687 | 16..1672 | 8285 | 100 | Plus |
| Src64B-RC | 2567 | CG7524-RC | 783..2439 | 16..1672 | 8285 | 100 | Plus |
| Src64B-RI | 4338 | CG7524-RI | 933..2589 | 16..1672 | 8285 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:33:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4594644..4595263 | 1672..1053 | 3085 | 99.8 | Minus |
| 3L | 28110227 | 3L | 4595316..4595624 | 1061..753 | 1545 | 100 | Minus |
| 3L | 28110227 | 3L | 4598154..4598419 | 281..16 | 1330 | 100 | Minus |
| 3L | 28110227 | 3L | 4595692..4595945 | 752..499 | 1270 | 100 | Minus |
| 3L | 28110227 | 3L | 4596064..4596284 | 498..278 | 1090 | 99.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:33:27 has no hits.
BO10931.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:03:04 Download gff for
BO10931.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Src64B-RC | 848..2503 | 17..1674 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:50:59 Download gff for
BO10931.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Src64B-RI | 934..2589 | 17..1674 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:51:21 Download gff for
BO10931.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Src64B-RI | 934..2589 | 17..1674 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:51:21 Download gff for
BO10931.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4594642..4595255 | 1061..1674 | 99 | <- | Minus |
| 3L | 4595317..4595624 | 753..1060 | 100 | <- | Minus |
| 3L | 4595692..4595945 | 499..752 | 100 | <- | Minus |
| 3L | 4596064..4596280 | 282..498 | 100 | <- | Minus |
| 3L | 4598154..4598418 | 17..281 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:50:59 Download gff for
BO10931.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4594642..4595255 | 1061..1674 | 99 | <- | Minus |
| arm_3L | 4595317..4595624 | 753..1060 | 100 | <- | Minus |
| arm_3L | 4595692..4595945 | 499..752 | 100 | <- | Minus |
| arm_3L | 4596064..4596280 | 282..498 | 100 | <- | Minus |
| arm_3L | 4598154..4598418 | 17..281 | 100 | | Minus |
BO10931.pep Sequence
Translation from 16 to 1690
> BO10931.pep
MGNKCCSKRQDQELALAYPTGGYKKSDYTFGQTHINSSGGGNMGGVLGQK
HNNGGSLDSRYTPDPNHRGPLKIGGKGGVDIIRPRTTPTGVPGVVLKRVV
VALYDYKSRDESDLSFMKGDRMEVIDDTESDWWRVVNLTTRQEGLIPLNF
VAEERSVNSEDWFFENVLRKEADKLLLAEENPRGTFLVRPSEHNPNGYSL
SVKDWEDGRGYHVKHYRIKPLDNGGYYIATNQTFPSLQALVMAYSKNALG
LCHILSRPCPKPQPQMWDLGPELRDKYEIPRSEIQLLRKLGRGNFGEVFY
GKWRNSIDVAVKTLREGTMSTAAFLQEAAIMKKFRHNRLVALYAVCSQEE
PIYIVQEYMSKGSLLDFLREGDGRYLHFEDLIYIATQVASGMEYLESKQL
IHRDLAARNVLIGENNVAKICDFGLARVIADDEYCPKQGSRFPVKWTAPE
AIIYGKFSIKSDVWSYGILLMELFTYGQVPYPGMHSREVIENIERGFRMP
KPTNHYFPDNIYQLLLQCWDAVPEKRPTFEFLNHYFESFSVTSEVPYREV
QDASFLDH
BO10931.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:46:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Src64B-PD | 552 | CG7524-PD | 1..552 | 1..552 | 2957 | 100 | Plus |
| Src64B-PC | 552 | CG7524-PC | 1..552 | 1..552 | 2957 | 100 | Plus |
| Src64B-PI | 552 | CG7524-PI | 1..552 | 1..552 | 2957 | 100 | Plus |
| Src64B-PH | 552 | CG7524-PH | 1..552 | 1..552 | 2957 | 100 | Plus |
| Src64B-PF | 552 | CG7524-PF | 1..552 | 1..552 | 2957 | 100 | Plus |
