Clone BO10938 Report

Search the DGRC for BO10938

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:109
Well:38
Vector:pDNR-Dual
Associated Gene/Transcriptrin-RA
Protein status:BO10938.pep: validated full length
Sequenced Size:2104

Clone Sequence Records

BO10938.3prime Sequence

916 bp (858 high quality bases) assembled on 2006-04-19

> BO10938.3prime
ATGGTCTAGAAAGCTTGCGCGACGTCCGTAGTTGCCACCACCACTCTGTC
CATTTCCGGCACCGCGCAGCGGTCCGTTAGACTGGTTGTTGCCGCCACCG
GTGCGGTTATCCTGGCGCTGTCCGAATCCACCGCCGCCTCCCAGGCGAGG
AGCACCGTTTCCTCCGCCGCCGCCCTGGCGCAGATTGTTGCCACCGGCAT
TGTTGCGCATCATGCCACCGCCGCTGCCATTGTTGTTGCCCATCGGACGC
GACTGCGGACCATTGTTGCCGCCCAAACGGCCCATGTTGTTGTTCAGGTT
GTTGCCACCGATCTGCTGGCGCGGCACCATGTCGTTGCGGACACGCGGCT
TCTTCTCCTCCACATTCAACTTCTGGCCATCGGGTGAGTTCTCCGGGAAG
TATAGGGGGCAGTTCGCCAGGCACTTTTGCACCGCCTCAGGATCGTCGTA
GGTAATGAATCCGTAGTTCAGCGGACTGCGCATGCCTGGTGGCACCTTGT
TGCCAGCCTTGGACAAAATGCGCAGCTCCAGGACATTTCCGAAGCGTGAG
AAGATCTCGCGCAGATCATCCTCGCTGGCGTGGTGCGGTATATTGCCCAA
AAACAGCTGCTGATTATCACCGAACTGCTGCGTGTTGCTCGAGCGACGCT
GCTCAAAGTCACCCTTGTTGTTGCGGATCGAGTTGTTTCGCTGCGGCAGC
GGGCCACCGTTGTCCAGTCGCGAGTTGCCGTTGCTGTTGTTGTACGACGA
AGCGGTGGTGGAGTAGCTAACCTGACTGCCATTACCGCCACCCGAGGTTG
CCGAGGAAGAGTTATAGGTGTTGCTGCTGATGGACTGCTGCTGCTGCTGT
TGCTGCTGGAGCTGTTGCTGCTGCTGCAGTGCGGCGTTCACAAAGCCGCT
GGGCGAGGAGGACGTG

BO10938.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:13:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG9412-PA 2073 rin-RA 1173..2070 916..19 4490 100 Minus
CG9412-PB 2073 rin-RB 1173..2070 916..19 4490 100 Minus
CG9412-PC 2073 rin-RC 1173..2070 916..19 4490 100 Minus
CG9412-PE 2073 rin-RE 1173..2070 916..19 4490 100 Minus
CG9412-PD 2073 rin-RD 1173..2070 916..19 4490 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:40:11
Subject Length Description Subject Range Query Range Score Percent Strand
rin-RG 5382 CG9412-RG 1521..2418 916..19 4490 100 Minus
rin-RF 3167 CG9412-RF 1420..2317 916..19 4490 100 Minus
rin-RE 3501 CG9412-RE 1754..2651 916..19 4490 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:40:04
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13651174..13651563 408..19 1950 100 Minus
3R 32079331 3R 13650241..13650497 916..660 1285 100 Minus
3R 32079331 3R 13650808..13651059 660..409 1260 100 Minus
Blast to na_te.dros performed on 2015-02-11 11:40:08 has no hits.

BO10938.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:53:44 Download gff for BO10938.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9412-PA 1173..2073 15..916 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:12:25 Download gff for BO10938.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9412-PD 1173..2073 15..916 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:29:45 Download gff for BO10938.3prime
Subject Subject Range Query Range Percent Splice Strand
rin-RB 1521..2422 14..916 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:51:26 Download gff for BO10938.3prime
Subject Subject Range Query Range Percent Splice Strand
rin-RE 1754..2655 14..916 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:51:26 Download gff for BO10938.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 13650241..13650497 660..916 100 -> Minus
3R 13650809..13651059 409..659 100 -> Minus
3R 13651174..13651567 14..408 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:29:45 Download gff for BO10938.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9475963..9476219 660..916 100 -> Minus
arm_3R 9476531..9476781 409..659 100 -> Minus
arm_3R 9476896..9477289 14..408 99   Minus

BO10938.5prime Sequence

950 bp (793 high quality bases) assembled on 2006-04-19

> BO10938.5prime
GAAGTTATCAGTCGACATGGTCATGGATGCGACCCAATCGCAGCAGCCTT
CGCCGCAATCTGTGGGACGCGAGTTTGTCCGCCAGTACTACACGCTGTTG
AACAAGGCGCCCAACCACTTGCATCGCTTCTATAACCACAACTCGTCGTA
CATCCATGGAGAGTCCAAGCTGGTGGTCGGTCAGCGGGAGATCCACAACC
GAATCCAGCAGCTGAACTTCAACGATTGCCACGCGAAGATCAGCCAGGTT
GATGCCCAGGCCACTTTGGGCAACGGTGTGGTGGTTCAGGTCACCGGGGA
GCTATCCAATGATGGCCAGCCGATGCGGCGTTTTACCCAGACGTTCGTTC
TGGCCGCTCAGTCGCCGAAGAAGTACTACGTGCACAACGACATCTTCCGC
TATCAGGATCTCTACATCGAGGACGAGCAGGATGGCGAGTCGCGATCGGA
GAACGATGAGGAGCACGATGTGCAGGTCGTCGGTGGCACTGTGGATCAAG
CTGTGCAGGTGGCCGGCGATGTAGTTGCCCAGCAGCCGCAGCAACAGCAG
GCTCCTCCGCAGCCACAGGCTCAGGTCGTGGTGCCCCAGCAGGTAGCTCC
TGTAGCGGCCGGTGGTGCTGCCCCACAGCAGATCTTCTACCCATTGCCAG
CGGGTGCTGCCGCCGGACGTCCTGTGGCTGTTTTGCCACCAGCTCCGCAA
GCCGCTGCTGTTCCACTGCCCGCGCAGTTCACCGTTCCGCCGCCACAGCC
CATCCAGAACGGTGTGGTGTCGCACGAGGAGCTGCAGCAGCAGCAGGTGC
TGGTCCCACCCAGCGTGTCTCCCCTGGTACAGCAGCAGCAGCCGACCGGC
ACGCCTGTGTTGCCCATTGTTCCAGTGCCAAGCGCGGGCTTCCAACAGTC
GGCACTGGTGGCACACAGCTCATCCAGCAGCAGCAGCAGCAGCAACCGGC

BO10938.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:13:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG9412-PA 2073 rin-RA 1..898 17..914 4465 99.8 Plus
CG9412-PB 2073 rin-RB 1..898 17..914 4465 99.8 Plus
CG9412-PC 2073 rin-RC 1..898 17..914 4465 99.8 Plus
CG9412-PE 2073 rin-RE 1..898 17..914 4465 99.8 Plus
CG9412-PD 2073 rin-RD 1..898 17..914 4465 99.8 Plus
CG9412-PA 2073 rin-RA 899..935 914..950 185 100 Plus
CG9412-PB 2073 rin-RB 899..935 914..950 185 100 Plus
CG9412-PC 2073 rin-RC 899..935 914..950 185 100 Plus
CG9412-PE 2073 rin-RE 899..935 914..950 185 100 Plus
CG9412-PD 2073 rin-RD 899..935 914..950 185 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 04:54:01
Subject Length Description Subject Range Query Range Score Percent Strand
rin-RG 5382 CG9412-RG 349..1283 17..950 4635 99.8 Plus
rin-RF 3167 CG9412-RF 248..1182 17..950 4635 99.8 Plus
rin-RE 3501 CG9412-RE 582..1516 17..950 4635 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 04:53:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13649069..13650003 17..950 4610 99.8 Plus
Blast to na_te.dros performed 2015-02-10 04:53:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2352..2390 530..568 123 79.5 Plus
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 631..711 850..772 121 63 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6752..6884 530..663 117 59.1 Plus
roo 9092 roo DM_ROO 9092bp 1088..1125 530..567 109 76.3 Plus

BO10938.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 04:53:45 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:12:27 Download gff for BO10938.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9412-PB 1..935 17..950 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:47:54 Download gff for BO10938.5prime
Subject Subject Range Query Range Percent Splice Strand
rin-RB 344..1283 9..950 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 07:25:28 Download gff for BO10938.5prime
Subject Subject Range Query Range Percent Splice Strand
rin-RE 577..1516 9..950 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 07:25:28 Download gff for BO10938.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 13649064..13650003 9..950 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:47:54 Download gff for BO10938.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9474786..9475725 9..950 99   Plus

BO10938.complete Sequence

2104 bp assembled on 2007-11-02

GenBank Submission: FJ631929

> BO10938.complete
GAAGTTATCAGTCGACATGGTCATGGATGCGACCCAATCGCAGCAGCCTT
CGCCGCAATCTGTGGGACGCGAGTTTGTCCGCCAGTACTACACGCTGTTG
AACAAGGCGCCCAACCACTTGCATCGCTTCTATAACCACAACTCGTCGTA
CATCCATGGAGAGTCCAAGCTGGTGGTCGGTCAGCGGGAGATCCACAACC
GAATCCAGCAGCTGAACTTCAACGATTGCCACGCGAAGATCAGCCAGGTT
GATGCCCAGGCCACTTTGGGCAACGGTGTGGTGGTTCAGGTCACCGGGGA
GCTATCCAATGATGGCCAGCCGATGCGGCGTTTTACCCAGACGTTCGTTC
TGGCCGCTCAGTCGCCGAAGAAGTACTACGTGCACAACGACATCTTCCGC
TATCAGGATCTCTACATCGAGGACGAGCAGGATGGCGAGTCGCGATCGGA
GAACGATGAGGAGCACGATGTGCAGGTCGTCGGTGGCACTGTGGATCAAG
CTGTGCAGGTGGCCGGCGATGTAGTTGCCCAGCAGCCGCAGCAACAGCAG
GCTCCTCCGCAGCCACAGGCTCAGGTCGTGGTGCCCCAGCAGGTAGCTCC
TGTAGCGGCCGGTGGTGCTGCCCCACAGCAGATCTTCTACCCATTGCCAG
CGGGTGCTGCCGCCGGACGTCCTGTGGCTGTTTTGCCACCAGCTCCGCAA
GCCGCTGCTGTTCCACTGCCCGCGCAGTTCACCGTTCCGCCGCCACAGCC
CATCCAGAACGGTGTGGTGTCGCACGAGGAGCTGCAGCAGCAGCAGGTGC
TGGTCCCACCCAGCGTGTCTCCCCTGGTACAGCAGCAGCAGCCGACCGGC
ACGCCTGTGTTGCCCATTGTTCCAGTGCCAAGCGCGGGCTTCCAACAGTC
GCCACTGGTGGCACCACAGCTCATCCAGCAGCAGCAGCAGCAGCAACCGG
CACAGCTGCCCCCGCAGCAGCAGCAGCAGCAGCAACCTATCCAGCAGCAG
CAGCCTTTGCAACAGCAGCAACAACCGCTGGCTGAGCCCGAGGAAGTGGA
GGTGGCGCCAAGGCAGCAGAAGCCTCCCACGCCCGTCGAGGATTTCAAGA
CCATTCACGAGCAGCAGCAGCAGGAGAAGTACGAGGCCGCCAAGCAGCAG
CAGAATGAGCCCAAGACGTACGCGAATCTCTTCAAGTCCACGTCCTCCTC
GCCCAGCGGCTTTGTGAACGCCGCACTGCAGCAGCAGCAACAGCTCCAGC
AGCAACAGCAGCAGCAGCAGTCCATCAGCAGCAACACCTATAACTCTTCC
TCGGCAACCTCGGGTGGCGGTAATGGCAGTCAGGTTAGCTACTCCACCAC
CGCTTCGTCGTACAACAACAGCAACGGCAACTCGCGACTGGACAACGGTG
GCCCGCTGCCGCAGCGAAACAACTCGATCCGCAACAACAAGGGTGACTTT
GAGCAGCGTCGCTCGAGCAACACGCAGCAGTTCGGTGATAATCAGCAGCT
GTTTTTGGGCAATATACCGCACCACGCCAGCGAGGATGATCTGCGCGAGA
TCTTCTCACGCTTCGGAAATGTCCTGGAGCTGCGCATTTTGTCCAAGGCT
GGCAACAAGGTGCCACCAGGCATGCGCAGTCCGCTGAACTACGGATTCAT
TACCTACGACGATCCTGAGGCGGTGCAAAAGTGCCTGGCGAACTGCCCCC
TATACTTCCCGGAGAACTCACCCGATGGCCAGAAGTTGAATGTGGAGGAG
AAGAAGCCGCGTGTCCGCAACGACATGGTGCCGCGCCAGCAGATCGGTGG
CAACAACCTGAACAACAACATGGGCCGTTTGGGCGGCAACAATGGTCCGC
AGTCGCGTCCGATGGGCAACAACAATGGCAGCGGCGGTGGCATGATGCGC
AACAATGCCGGTGGCAACAATCTGCGCCAGGGCGGCGGCGGAGGAAACGG
TGCTCCTCGCCTGGGAGGCGGCGGTGGATTCGGACAGCGCCAGGATAACC
GCACCGGTGGCGGCAACAACCAGTCTAACGGACCGCTGCGCGGTGCCGGA
AATGGACAGAGTGGTGGTGGCAACTACGGACGTCGCGCAAGCTTTCTAGA
CCAT

BO10938.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:31:27
Subject Length Description Subject Range Query Range Score Percent Strand
rin-RG 2073 CG9412-PG 1..2070 17..2086 10350 100 Plus
rin-RF 2073 CG9412-PF 1..2070 17..2086 10350 100 Plus
rin-RE 2073 CG9412-PE 1..2070 17..2086 10350 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:31:30
Subject Length Description Subject Range Query Range Score Percent Strand
rin-RG 5382 CG9412-RG 349..2418 17..2086 10350 100 Plus
rin-RF 3167 CG9412-RF 248..2317 17..2086 10350 100 Plus
rin-RE 3501 CG9412-RE 582..2651 17..2086 10350 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:31:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13649069..13650497 17..1445 7145 100 Plus
3R 32079331 3R 13651174..13651563 1697..2086 1950 100 Plus
3R 32079331 3R 13650808..13651059 1445..1696 1260 100 Plus
Blast to na_te.dros performed 2014-11-27 01:31:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2307..2668 926..1295 348 60.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6731..7079 926..1285 315 58.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2748..2856 914..1022 239 68.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6944 774..1001 186 57.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6899 975..1160 160 58.2 Plus
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 631..711 850..772 121 63 Minus
Dvir\Uvir 6564 Dvir\Uvir VIRUVIR 6564bp 4504..4552 1107..1155 119 71.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6752..6884 530..663 117 59.1 Plus

BO10938.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:56:59 Download gff for BO10938.complete
Subject Subject Range Query Range Percent Splice Strand
rin-RC 1..2073 17..2090 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:07:52 Download gff for BO10938.complete
Subject Subject Range Query Range Percent Splice Strand
rin-RC 729..2807 9..2091 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:55:59 Download gff for BO10938.complete
Subject Subject Range Query Range Percent Splice Strand
rin-RB 349..2418 17..2088 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:30:39 Download gff for BO10938.complete
Subject Subject Range Query Range Percent Splice Strand
rin-RC 734..2803 17..2088 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:27:10 Download gff for BO10938.complete
Subject Subject Range Query Range Percent Splice Strand
rin-RE 582..2651 17..2088 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:27:10 Download gff for BO10938.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13649069..13650497 17..1445 100 -> Plus
3R 13650809..13651059 1446..1696 100 -> Plus
3R 13651174..13651563 1697..2088 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:55:59 Download gff for BO10938.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9474791..9476219 17..1445 100 -> Plus
arm_3R 9476531..9476781 1446..1696 100 -> Plus
arm_3R 9476896..9477285 1697..2088 99   Plus

BO10938.pep Sequence

Translation from 16 to 2104

> BO10938.pep
MVMDATQSQQPSPQSVGREFVRQYYTLLNKAPNHLHRFYNHNSSYIHGES
KLVVGQREIHNRIQQLNFNDCHAKISQVDAQATLGNGVVVQVTGELSNDG
QPMRRFTQTFVLAAQSPKKYYVHNDIFRYQDLYIEDEQDGESRSENDEEH
DVQVVGGTVDQAVQVAGDVVAQQPQQQQAPPQPQAQVVVPQQVAPVAAGG
AAPQQIFYPLPAGAAAGRPVAVLPPAPQAAAVPLPAQFTVPPPQPIQNGV
VSHEELQQQQVLVPPSVSPLVQQQQPTGTPVLPIVPVPSAGFQQSPLVAP
QLIQQQQQQQPAQLPPQQQQQQQPIQQQQPLQQQQQPLAEPEEVEVAPRQ
QKPPTPVEDFKTIHEQQQQEKYEAAKQQQNEPKTYANLFKSTSSSPSGFV
NAALQQQQQLQQQQQQQQSISSNTYNSSSATSGGGNGSQVSYSTTASSYN
NSNGNSRLDNGGPLPQRNNSIRNNKGDFEQRRSSNTQQFGDNQQLFLGNI
PHHASEDDLREIFSRFGNVLELRILSKAGNKVPPGMRSPLNYGFITYDDP
EAVQKCLANCPLYFPENSPDGQKLNVEEKKPRVRNDMVPRQQIGGNNLNN
NMGRLGGNNGPQSRPMGNNNGSGGGMMRNNAGGNNLRQGGGGGNGAPRLG
GGGGFGQRQDNRTGGGNNQSNGPLRGAGNGQSGGGNYGRRASFLDH

BO10938.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:02:09
Subject Length Description Subject Range Query Range Score Percent Strand
rin-PG 690 CG9412-PG 1..690 1..690 3628 100 Plus
rin-PF 690 CG9412-PF 1..690 1..690 3628 100 Plus
rin-PE 690 CG9412-PE 1..690 1..690 3628 100 Plus
rin-PB 690 CG9412-PB 1..690 1..690 3628 100 Plus
Wnk-PN 2441 CG7177-PN 769..1129 57..421 250 26.2 Plus