Clone BO10939 Report

Search the DGRC for BO10939

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:109
Well:39
Vector:pDNR-Dual
Associated Gene/TranscriptRpS6-RA
Protein status:BO10939.pep: validated full length
Sequenced Size:685

Clone Sequence Records

BO10939.3prime Sequence

683 bp (682 high quality bases) assembled on 2006-04-19

> BO10939.3prime
ATGGTCTAGAAAGCTTGCCTTCTTGTCGCTGGAGACAGAGCTCTTGGACT
CGCGAATGGAGGCAGAACGGCGGCGCTTGGCCTCCTCGCGCTTGGCCTTG
GACTCCTTCTTGCGCTGCACCAACAGCTTGGCGTAGTCGGCGGAAGCCTC
CTTGGAAGCGATCTGGCGCTTCTTCTTCAGCGCAATGCGACGGTGCTTGC
GCTGCAGCACAACGGGGGTGATCAGGCGCTGAATTTTGGGGGCCTTGGAG
GTGGCCTTCTTGTTGTCCTTGGCGGGCAAAGGGCGACGCACAACGAAGCG
ACGCACATCATCTTCCTTGCTCAAGTTGTAGAGCTTGCGGATCTTGCTAG
CACGCTTGGGTCCCAGGCGACGTGGGATGGTGGTGTCGGTGAGACCGGGA
ATGTCCTTCTCACCCTTCTTCAAGACGACCAGAGCCAGCACAGACATGTT
GGCGTCCACGATGCATCCACGCACAGACTTGCGCTTACGCTCGCCAGTGC
GGCGTGGACGGTAGCAGGAGTGTCCCTTCTTCAGGAGCAGACGCACACGG
CCGTGGGTCAAGACACCCTGCTTCATGGGGAATCCCTGCTTGTCGTTGCC
GCCGGCGATGCGCAGCTGGTAGCCCTTCCACTCGTCACCGAGGATATCGG
CCTCCACAACCTGTCCCATGTCGACTGATAACT

BO10939.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:13:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG10944-PB 747 RpS6-RB 94..744 669..19 3255 100 Minus
CG10944-PA 654 RpS6-RA 1..651 669..19 3255 100 Minus
CG10944-PC 756 RpS6-RC 103..753 669..19 3255 100 Minus
CG11386-PA 408 CG11386-RA 284..347 155..92 145 89 Minus
CG33222-PA 408 CG33222-RA 284..347 155..92 145 89 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:49:22
Subject Length Description Subject Range Query Range Score Percent Strand
RpS6-RA 1195 CG10944-RA 412..1062 669..19 3255 100 Minus
RpS6-RB 960 CG10944-RB 177..827 669..19 3255 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:49:17
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7899757..7900290 19..552 2670 100 Plus
X 23542271 X 7900802..7900920 551..669 595 100 Plus
X 23542271 X 7897401..7897490 87..176 270 86.7 Plus
X 23542271 X 7898591..7898680 87..176 270 86.7 Plus
X 23542271 X 7897603..7897725 415..537 195 77.2 Plus
X 23542271 X 7898793..7898915 415..537 195 77.2 Plus
Blast to na_te.dros performed on 2015-02-12 04:49:19 has no hits.

BO10939.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:53:45 Download gff for BO10939.3prime
Subject Subject Range Query Range Percent Splice Strand
RpS6-PC 98..756 15..676 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:12:28 Download gff for BO10939.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10944-PC 98..756 15..676 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:29:03 Download gff for BO10939.3prime
Subject Subject Range Query Range Percent Splice Strand
RpS6-RB 172..830 15..676 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:13:40 Download gff for BO10939.3prime
Subject Subject Range Query Range Percent Splice Strand
RpS6-RB 172..830 15..676 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:13:40 Download gff for BO10939.3prime
Subject Subject Range Query Range Percent Splice Strand
X 7899753..7900289 15..551 99 <- Plus
X 7900803..7900925 552..676 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:29:03 Download gff for BO10939.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 7793786..7794322 15..551 99 <- Plus
arm_X 7794836..7794958 552..676 97   Plus

BO10939.5prime Sequence

683 bp (682 high quality bases) assembled on 2006-04-19

> BO10939.5prime
GAAGTTATCAGTCGACATGGGACAGGTTGTGGAGGCCGATATCCTCGGTG
ACGAGTGGAAGGGCTACCAGCTGCGCATCGCCGGCGGCAACGACAAGCAG
GGATTCCCCATGAAGCAGGGTGTCTTGACCCACGGCCGTGTGCGTCTGCT
CCTGAAGAAGGGACACTCCTGCTACCGTCCACGCCGCACTGGCGAGCGTA
AGCGCAAGTCTGTGCGTGGATGCATCGTGGACGCCAACATGTCTGTGCTG
GCTCTGGTCGTCTTGAAGAAGGGTGAGAAGGACATTCCCGGTCTCACCGA
CACCACCATCCCACGTCGCCTGGGACCCAAGCGTGCTAGCAAGATCCGCA
AGCTCTACAACTTGAGCAAGGAAGATGATGTGCGTCGCTTCGTTGTGCGT
CGCCCTTTGCCCGCCAAGGACAACAAGAAGGCCACCTCCAAGGCCCCCAA
AATTCAGCGCCTGATCACCCCCGTTGTGCTGCAGCGCAAGCACCGTCGCA
TTGCGCTGAAGAAGAAGCGCCAGATCGCTTCCAAGGAGGCTTCCGCCGAC
TACGCCAAGCTGTTGGTGCAGCGCAAGAAGGAGTCCAAGGCCAAGCGCGA
GGAGGCCAAGCGCCGCCGTTCTGCCTCCATTCGCGAGTCCAAGAGCTCTG
TCTCCAGCGACAAGAAGGCAAGCTTTCTAGACC

BO10939.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:13:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG10944-PB 747 RpS6-RB 94..744 17..667 3255 100 Plus
CG10944-PA 654 RpS6-RA 1..651 17..667 3255 100 Plus
CG10944-PC 756 RpS6-RC 103..753 17..667 3255 100 Plus
CG11386-PA 408 CG11386-RA 284..347 531..594 145 89 Plus
CG33222-PA 408 CG33222-RA 284..347 531..594 145 89 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:49:55
Subject Length Description Subject Range Query Range Score Percent Strand
RpS6-RA 1195 CG10944-RA 412..1062 17..667 3255 100 Plus
RpS6-RB 960 CG10944-RB 177..827 17..667 3255 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:49:53
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7899757..7900290 667..134 2670 100 Minus
X 23542271 X 7900802..7900920 135..17 595 100 Minus
X 23542271 X 7897401..7897490 599..510 270 86.7 Minus
X 23542271 X 7898591..7898680 599..510 270 86.7 Minus
X 23542271 X 7897603..7897725 271..149 195 77.2 Minus
X 23542271 X 7898793..7898915 271..149 195 77.2 Minus
Blast to na_te.dros performed on 2015-02-10 23:49:54 has no hits.

BO10939.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:53:46 Download gff for BO10939.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS6-PC 98..756 10..671 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:12:30 Download gff for BO10939.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10944-PC 98..756 10..671 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:28:45 Download gff for BO10939.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS6-RB 172..830 10..671 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:15:18 Download gff for BO10939.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS6-RB 172..830 10..671 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:15:18 Download gff for BO10939.5prime
Subject Subject Range Query Range Percent Splice Strand
X 7899753..7900289 135..671 99 <- Minus
X 7900803..7900925 10..134 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:28:45 Download gff for BO10939.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 7793786..7794322 135..671 99 <- Minus
arm_X 7794836..7794958 10..134 97   Minus

BO10939.complete Sequence

685 bp (685 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ631930

> BO10939.complete
GAAGTTATCAGTCGACATGGGACAGGTTGTGGAGGCCGATATCCTCGGTG
ACGAGTGGAAGGGCTACCAGCTGCGCATCGCCGGCGGCAACGACAAGCAG
GGATTCCCCATGAAGCAGGGTGTCTTGACCCACGGCCGTGTGCGTCTGCT
CCTGAAGAAGGGACACTCCTGCTACCGTCCACGCCGCACTGGCGAGCGTA
AGCGCAAGTCTGTGCGTGGATGCATCGTGGACGCCAACATGTCTGTGCTG
GCTCTGGTCGTCTTGAAGAAGGGTGAGAAGGACATTCCCGGTCTCACCGA
CACCACCATCCCACGTCGCCTGGGACCCAAGCGTGCTAGCAAGATCCGCA
AGCTCTACAACTTGAGCAAGGAAGATGATGTGCGTCGCTTCGTTGTGCGT
CGCCCTTTGCCCGCCAAGGACAACAAGAAGGCCACCTCCAAGGCCCCCAA
AATTCAGCGCCTGATCACCCCCGTTGTGCTGCAGCGCAAGCACCGTCGCA
TTGCGCTGAAGAAGAAGCGCCAGATCGCTTCCAAGGAGGCTTCCGCCGAC
TACGCCAAGCTGTTGGTGCAGCGCAAGAAGGAGTCCAAGGCCAAGCGCGA
GGAGGCCAAGCGCCGCCGTTCTGCCTCCATTCGCGAGTCCAAGAGCTCTG
TCTCCAGCGACAAGAAGGCAAGCTTTCTAGACCAT

BO10939.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:51:35
Subject Length Description Subject Range Query Range Score Percent Strand
RpS6-RA 654 CG10944-PA 1..651 17..667 3255 100 Plus
RpS6-RB 747 CG10944-PB 94..744 17..667 3255 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:51:37
Subject Length Description Subject Range Query Range Score Percent Strand
RpS6-RA 1195 CG10944-RA 412..1062 17..667 3255 100 Plus
RpS6-RB 960 CG10944-RB 177..827 17..667 3255 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:51:31
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7899757..7900290 667..134 2670 100 Minus
X 23542271 X 7900802..7900920 135..17 595 100 Minus
X 23542271 X 7897401..7897490 599..510 270 86.7 Minus
X 23542271 X 7898591..7898680 599..510 270 86.7 Minus
X 23542271 X 7897603..7897725 271..149 195 77.2 Minus
X 23542271 X 7898793..7898915 271..149 195 77.2 Minus
Blast to na_te.dros performed on 2014-11-27 08:51:34 has no hits.

BO10939.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:48:48 Download gff for BO10939.complete
Subject Subject Range Query Range Percent Splice Strand
RpS6-RA 1..654 17..671 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:20:06 Download gff for BO10939.complete
Subject Subject Range Query Range Percent Splice Strand
RpS6-RA 338..996 10..671 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:02:31 Download gff for BO10939.complete
Subject Subject Range Query Range Percent Splice Strand
RpS6-RB 177..827 17..669 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:48:48 Download gff for BO10939.complete
Subject Subject Range Query Range Percent Splice Strand
RpS6-RA 338..996 10..671 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:27:42 Download gff for BO10939.complete
Subject Subject Range Query Range Percent Splice Strand
RpS6-RB 177..827 17..669 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:27:42 Download gff for BO10939.complete
Subject Subject Range Query Range Percent Splice Strand
X 7899755..7900289 135..669 99 <- Minus
X 7900803..7900920 17..134 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:02:31 Download gff for BO10939.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 7793788..7794322 135..669 99 <- Minus
arm_X 7794836..7794953 17..134 100   Minus

BO10939.pep Sequence

Translation from 16 to 685

> BO10939.pep
MGQVVEADILGDEWKGYQLRIAGGNDKQGFPMKQGVLTHGRVRLLLKKGH
SCYRPRRTGERKRKSVRGCIVDANMSVLALVVLKKGEKDIPGLTDTTIPR
RLGPKRASKIRKLYNLSKEDDVRRFVVRRPLPAKDNKKATSKAPKIQRLI
TPVVLQRKHRRIALKKKRQIASKEASADYAKLLVQRKKESKAKREEAKRR
RSASIRESKSSVSSDKKASFLDH

BO10939.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:31:30
Subject Length Description Subject Range Query Range Score Percent Strand
RpS6-PA 217 CG10944-PA 1..217 1..217 1087 100 Plus
RpS6-PB 248 CG10944-PB 32..248 1..217 1087 100 Plus