Clone Sequence Records
BO10939.3prime Sequence
683 bp (682 high quality bases) assembled on 2006-04-19
> BO10939.3prime
ATGGTCTAGAAAGCTTGCCTTCTTGTCGCTGGAGACAGAGCTCTTGGACT
CGCGAATGGAGGCAGAACGGCGGCGCTTGGCCTCCTCGCGCTTGGCCTTG
GACTCCTTCTTGCGCTGCACCAACAGCTTGGCGTAGTCGGCGGAAGCCTC
CTTGGAAGCGATCTGGCGCTTCTTCTTCAGCGCAATGCGACGGTGCTTGC
GCTGCAGCACAACGGGGGTGATCAGGCGCTGAATTTTGGGGGCCTTGGAG
GTGGCCTTCTTGTTGTCCTTGGCGGGCAAAGGGCGACGCACAACGAAGCG
ACGCACATCATCTTCCTTGCTCAAGTTGTAGAGCTTGCGGATCTTGCTAG
CACGCTTGGGTCCCAGGCGACGTGGGATGGTGGTGTCGGTGAGACCGGGA
ATGTCCTTCTCACCCTTCTTCAAGACGACCAGAGCCAGCACAGACATGTT
GGCGTCCACGATGCATCCACGCACAGACTTGCGCTTACGCTCGCCAGTGC
GGCGTGGACGGTAGCAGGAGTGTCCCTTCTTCAGGAGCAGACGCACACGG
CCGTGGGTCAAGACACCCTGCTTCATGGGGAATCCCTGCTTGTCGTTGCC
GCCGGCGATGCGCAGCTGGTAGCCCTTCCACTCGTCACCGAGGATATCGG
CCTCCACAACCTGTCCCATGTCGACTGATAACT
BO10939.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:13:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10944-PB | 747 | RpS6-RB | 94..744 | 669..19 | 3255 | 100 | Minus |
CG10944-PA | 654 | RpS6-RA | 1..651 | 669..19 | 3255 | 100 | Minus |
CG10944-PC | 756 | RpS6-RC | 103..753 | 669..19 | 3255 | 100 | Minus |
CG11386-PA | 408 | CG11386-RA | 284..347 | 155..92 | 145 | 89 | Minus |
CG33222-PA | 408 | CG33222-RA | 284..347 | 155..92 | 145 | 89 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:49:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS6-RA | 1195 | CG10944-RA | 412..1062 | 669..19 | 3255 | 100 | Minus |
RpS6-RB | 960 | CG10944-RB | 177..827 | 669..19 | 3255 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:49:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 7899757..7900290 | 19..552 | 2670 | 100 | Plus |
X | 23542271 | X | 7900802..7900920 | 551..669 | 595 | 100 | Plus |
X | 23542271 | X | 7897401..7897490 | 87..176 | 270 | 86.7 | Plus |
X | 23542271 | X | 7898591..7898680 | 87..176 | 270 | 86.7 | Plus |
X | 23542271 | X | 7897603..7897725 | 415..537 | 195 | 77.2 | Plus |
X | 23542271 | X | 7898793..7898915 | 415..537 | 195 | 77.2 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:49:19 has no hits.
BO10939.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:53:45 Download gff for
BO10939.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS6-PC | 98..756 | 15..676 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:12:28 Download gff for
BO10939.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10944-PC | 98..756 | 15..676 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:29:03 Download gff for
BO10939.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS6-RB | 172..830 | 15..676 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:13:40 Download gff for
BO10939.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS6-RB | 172..830 | 15..676 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:13:40 Download gff for
BO10939.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 7899753..7900289 | 15..551 | 99 | <- | Plus |
X | 7900803..7900925 | 552..676 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:29:03 Download gff for
BO10939.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 7793786..7794322 | 15..551 | 99 | <- | Plus |
arm_X | 7794836..7794958 | 552..676 | 97 | | Plus |
BO10939.5prime Sequence
683 bp (682 high quality bases) assembled on 2006-04-19
> BO10939.5prime
GAAGTTATCAGTCGACATGGGACAGGTTGTGGAGGCCGATATCCTCGGTG
ACGAGTGGAAGGGCTACCAGCTGCGCATCGCCGGCGGCAACGACAAGCAG
GGATTCCCCATGAAGCAGGGTGTCTTGACCCACGGCCGTGTGCGTCTGCT
CCTGAAGAAGGGACACTCCTGCTACCGTCCACGCCGCACTGGCGAGCGTA
AGCGCAAGTCTGTGCGTGGATGCATCGTGGACGCCAACATGTCTGTGCTG
GCTCTGGTCGTCTTGAAGAAGGGTGAGAAGGACATTCCCGGTCTCACCGA
CACCACCATCCCACGTCGCCTGGGACCCAAGCGTGCTAGCAAGATCCGCA
AGCTCTACAACTTGAGCAAGGAAGATGATGTGCGTCGCTTCGTTGTGCGT
CGCCCTTTGCCCGCCAAGGACAACAAGAAGGCCACCTCCAAGGCCCCCAA
AATTCAGCGCCTGATCACCCCCGTTGTGCTGCAGCGCAAGCACCGTCGCA
TTGCGCTGAAGAAGAAGCGCCAGATCGCTTCCAAGGAGGCTTCCGCCGAC
TACGCCAAGCTGTTGGTGCAGCGCAAGAAGGAGTCCAAGGCCAAGCGCGA
GGAGGCCAAGCGCCGCCGTTCTGCCTCCATTCGCGAGTCCAAGAGCTCTG
TCTCCAGCGACAAGAAGGCAAGCTTTCTAGACC
BO10939.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:13:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10944-PB | 747 | RpS6-RB | 94..744 | 17..667 | 3255 | 100 | Plus |
CG10944-PA | 654 | RpS6-RA | 1..651 | 17..667 | 3255 | 100 | Plus |
CG10944-PC | 756 | RpS6-RC | 103..753 | 17..667 | 3255 | 100 | Plus |
CG11386-PA | 408 | CG11386-RA | 284..347 | 531..594 | 145 | 89 | Plus |
CG33222-PA | 408 | CG33222-RA | 284..347 | 531..594 | 145 | 89 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:49:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS6-RA | 1195 | CG10944-RA | 412..1062 | 17..667 | 3255 | 100 | Plus |
RpS6-RB | 960 | CG10944-RB | 177..827 | 17..667 | 3255 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:49:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 7899757..7900290 | 667..134 | 2670 | 100 | Minus |
X | 23542271 | X | 7900802..7900920 | 135..17 | 595 | 100 | Minus |
X | 23542271 | X | 7897401..7897490 | 599..510 | 270 | 86.7 | Minus |
X | 23542271 | X | 7898591..7898680 | 599..510 | 270 | 86.7 | Minus |
X | 23542271 | X | 7897603..7897725 | 271..149 | 195 | 77.2 | Minus |
X | 23542271 | X | 7898793..7898915 | 271..149 | 195 | 77.2 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:49:54 has no hits.
BO10939.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:53:46 Download gff for
BO10939.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS6-PC | 98..756 | 10..671 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:12:30 Download gff for
BO10939.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10944-PC | 98..756 | 10..671 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:28:45 Download gff for
BO10939.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS6-RB | 172..830 | 10..671 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:15:18 Download gff for
BO10939.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS6-RB | 172..830 | 10..671 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:15:18 Download gff for
BO10939.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 7899753..7900289 | 135..671 | 99 | <- | Minus |
X | 7900803..7900925 | 10..134 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:28:45 Download gff for
BO10939.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 7793786..7794322 | 135..671 | 99 | <- | Minus |
arm_X | 7794836..7794958 | 10..134 | 97 | | Minus |
BO10939.complete Sequence
685 bp (685 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631930
> BO10939.complete
GAAGTTATCAGTCGACATGGGACAGGTTGTGGAGGCCGATATCCTCGGTG
ACGAGTGGAAGGGCTACCAGCTGCGCATCGCCGGCGGCAACGACAAGCAG
GGATTCCCCATGAAGCAGGGTGTCTTGACCCACGGCCGTGTGCGTCTGCT
CCTGAAGAAGGGACACTCCTGCTACCGTCCACGCCGCACTGGCGAGCGTA
AGCGCAAGTCTGTGCGTGGATGCATCGTGGACGCCAACATGTCTGTGCTG
GCTCTGGTCGTCTTGAAGAAGGGTGAGAAGGACATTCCCGGTCTCACCGA
CACCACCATCCCACGTCGCCTGGGACCCAAGCGTGCTAGCAAGATCCGCA
AGCTCTACAACTTGAGCAAGGAAGATGATGTGCGTCGCTTCGTTGTGCGT
CGCCCTTTGCCCGCCAAGGACAACAAGAAGGCCACCTCCAAGGCCCCCAA
AATTCAGCGCCTGATCACCCCCGTTGTGCTGCAGCGCAAGCACCGTCGCA
TTGCGCTGAAGAAGAAGCGCCAGATCGCTTCCAAGGAGGCTTCCGCCGAC
TACGCCAAGCTGTTGGTGCAGCGCAAGAAGGAGTCCAAGGCCAAGCGCGA
GGAGGCCAAGCGCCGCCGTTCTGCCTCCATTCGCGAGTCCAAGAGCTCTG
TCTCCAGCGACAAGAAGGCAAGCTTTCTAGACCAT
BO10939.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:51:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS6-RA | 654 | CG10944-PA | 1..651 | 17..667 | 3255 | 100 | Plus |
RpS6-RB | 747 | CG10944-PB | 94..744 | 17..667 | 3255 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:51:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS6-RA | 1195 | CG10944-RA | 412..1062 | 17..667 | 3255 | 100 | Plus |
RpS6-RB | 960 | CG10944-RB | 177..827 | 17..667 | 3255 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:51:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 7899757..7900290 | 667..134 | 2670 | 100 | Minus |
X | 23542271 | X | 7900802..7900920 | 135..17 | 595 | 100 | Minus |
X | 23542271 | X | 7897401..7897490 | 599..510 | 270 | 86.7 | Minus |
X | 23542271 | X | 7898591..7898680 | 599..510 | 270 | 86.7 | Minus |
X | 23542271 | X | 7897603..7897725 | 271..149 | 195 | 77.2 | Minus |
X | 23542271 | X | 7898793..7898915 | 271..149 | 195 | 77.2 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:51:34 has no hits.
BO10939.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:48:48 Download gff for
BO10939.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS6-RA | 1..654 | 17..671 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:20:06 Download gff for
BO10939.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS6-RA | 338..996 | 10..671 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:02:31 Download gff for
BO10939.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS6-RB | 177..827 | 17..669 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:48:48 Download gff for
BO10939.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS6-RA | 338..996 | 10..671 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:27:42 Download gff for
BO10939.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS6-RB | 177..827 | 17..669 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:27:42 Download gff for
BO10939.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 7899755..7900289 | 135..669 | 99 | <- | Minus |
X | 7900803..7900920 | 17..134 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:02:31 Download gff for
BO10939.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 7793788..7794322 | 135..669 | 99 | <- | Minus |
arm_X | 7794836..7794953 | 17..134 | 100 | | Minus |
BO10939.pep Sequence
Translation from 16 to 685
> BO10939.pep
MGQVVEADILGDEWKGYQLRIAGGNDKQGFPMKQGVLTHGRVRLLLKKGH
SCYRPRRTGERKRKSVRGCIVDANMSVLALVVLKKGEKDIPGLTDTTIPR
RLGPKRASKIRKLYNLSKEDDVRRFVVRRPLPAKDNKKATSKAPKIQRLI
TPVVLQRKHRRIALKKKRQIASKEASADYAKLLVQRKKESKAKREEAKRR
RSASIRESKSSVSSDKKASFLDH
BO10939.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:31:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS6-PA | 217 | CG10944-PA | 1..217 | 1..217 | 1087 | 100 | Plus |
RpS6-PB | 248 | CG10944-PB | 32..248 | 1..217 | 1087 | 100 | Plus |