Clone Sequence Records
BO10944.3prime Sequence
948 bp (866 high quality bases) assembled on 2006-04-19
> BO10944.3prime
ATGGTCTAGAAAGCTTGCAATTCTGTCCTCCTCATCCTCTTCCTCCTCCT
CCTCGACCTCCTCGCCGTTCTCCTCTAGCTCCTCCTTGTAGCCAGGATGC
TCAGAGATGGCATAGTAATTGCCATTGTAAATGACGCCCAGTTCGCGCAG
CGCATCGCCGCGTATTGTCGCCTTTATCGTCCAGTTGTAGCAGTCGTCTG
ACTCGGACTCGCGATCCAATCGCTCCACGTCAAGGATCTTGGAGTTGAGG
CGTTCCAGTATGATGCCGATGTCCTTGATGCTGAGGTGACGCTTCTGGTC
CACCGACAACTGGTCGATCAGCAGCAGAAACTTCTCCGTCGTCGTCTTGT
CGTCCTCCATCACCGTGTTCTCCGTTTCGCTCTCGGAGCTATCCCGCTCG
GGAGCGATGTCCAGGAATCGCACATGGCCCTTGGCGCCCGAGGAGCGGCG
TTGCATGCTGCCGCTTCCGCCGCCACCGCTGCCGCCCAGCATAGGATCCA
TAACCGATGGTGCCGACTGCGGCTGGGGACTGCTGCTTCCGTCCTGGATG
GGCGACGTGGCCACGCTCTTGTGCACAGCGATCTTGCGCCCCTCCTCGTG
CAGCGCACAGCAGTGGAAGTCGCACTCGGTGGTGCTGGGACTGCCCGCCC
TGCTGGGCGTGTGGGCGTGGTGGGCGCATTCCGGCGTGTGCACATGGACA
GCTCCCACACCCACGCCTACGGTGCTGTCGAAGGAGCTTCCCTGCTTGGA
GAGTCGCCTGCTGCCGCCGGGTATCACAACTCCTGGCGGCAGAACAACGC
CACCGGGATGGTATATGCTCGCCGGTCCGTCGTCGCTGATCACCGTTATT
TGAGGGCTGGCATAGCGCGGCTGGGAGGACTGCGACGACACCGACTTGTT
GTCCAGCGAACTCTGCGCGGAGAGGCCCTTCTTTGAGGGCGAGTACTT
BO10944.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:13:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1975-PA | 1449 | Rep2-RA | 517..1446 | 948..19 | 4650 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:02:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Drep-2-RC | 5839 | CG1975-RC | 1518..2447 | 948..19 | 4650 | 100 | Minus |
Drep-2-RD | 1827 | CG1975-RD | 579..1508 | 948..19 | 4650 | 100 | Minus |
Drep-2-RB | 5203 | CG1975-RB | 1493..2422 | 948..19 | 4650 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:02:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9298500..9299429 | 948..19 | 4650 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:02:56 has no hits.
BO10944.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:53:53 Download gff for
BO10944.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rep2-PA | 517..1449 | 18..948 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:12:40 Download gff for
BO10944.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1975-PA | 517..1449 | 18..948 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 15:55:17 Download gff for
BO10944.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Drep-2-RB | 1493..2422 | 19..948 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:48:00 Download gff for
BO10944.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Drep-2-RB | 1493..2422 | 19..948 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:48:00 Download gff for
BO10944.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9298500..9299429 | 19..948 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 15:55:17 Download gff for
BO10944.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5186005..5186934 | 19..948 | 100 | | Minus |
BO10944.5prime Sequence
933 bp (907 high quality bases) assembled on 2006-04-19
> BO10944.5prime
GAAGTTATCAGTCGACATGGCCAGAGAGGAGTCTCGCGGCAAGAGACCAC
TGAAAATCTGGGACAGCTGGCGGAATGTGCGCAAGGGCGTCGTAGTTGGG
ACCTTCGAGGAGCTCTTGGTCCGCGGCAAGGATAAGCTGGGGGTTCCTGC
TTCAGAACCGGTGCGCGTTGTTCTGGAGTGTGATGGAACCCAAATCGAGG
ATGGCGAATACTTTCGCACCCTGGCCAACAATACGGTGCTGCTGCTGTTA
AGGCAGGGCGAGCGCTGGTATCCCACTGGCGTCGATGTCATAAAGGCTGC
CATATCAGCTATACCGAAAATCGTCTGTGAGACGATTCATGCGCTGGAGT
TGCACGATGAGACACCGTCGTGGAAGATCATGGATAACAAAGGGCGTGTC
ACGGTCGTTCTGCACTGGGATCAGCGGCAGGGTGGAGGAAGCGGCGGCGG
AGGAGGAGGCGGTGGCGCCGGCGGCGGAGTGGGGAGCATGTGCTCCGGCC
TGGGCAGCAGCAATGGGCTGCTGTCGTCCGATAAGTACTCGCCCTCAAAG
AAGGGCCTCTCCGCGCAGAGTTCGCTGGACAACAAGTCGGTGTCGTCGCA
GTCCTCCCAGCCGCGCTATGCCAGCCCTCAAATAACGGTGATCAGCGACG
ACGGACCGGCGAGCATATACCATCCCGGTGGCGTTGTTCTGCCGCCAGGA
GTTGTGATACCCGGCGGCAGCAGGCGACTCTCCAAGCAGGGAAGCTCCTT
CGACAGCACCGTAGGCGTGGGTGTGGGAGCTGTCCATGTGCACACGCCGG
AATGCGCCCACCACGCCCACACGCCCAGCAGGGCGGGCAGTCCCAGCACC
ACCGAGTGCGACTTCCACTGCTGTGCGCTGCACGAGGAGGGGCGCAAGAT
CGCTGTGCACAAGAGCGTGGCCACGTCGCCCAT
BO10944.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:13:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1975-PA | 1449 | Rep2-RA | 1..917 | 17..933 | 4585 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:49:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Drep-2-RC | 5839 | CG1975-RC | 1002..1918 | 17..933 | 4585 | 100 | Plus |
Drep-2-RA | 5229 | CG1975-RA | 1003..1919 | 17..933 | 4585 | 100 | Plus |
Drep-2-RD | 1827 | CG1975-RD | 74..979 | 28..933 | 4530 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:49:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9298266..9298900 | 299..933 | 3175 | 100 | Plus |
2R | 25286936 | 2R | 9297264..9297536 | 27..299 | 1365 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 23:49:58 has no hits.
BO10944.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:53:54 Download gff for
BO10944.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rep2-PA | 1..917 | 17..933 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:12:41 Download gff for
BO10944.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1975-PA | 1..917 | 17..933 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:28:47 Download gff for
BO10944.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Drep-2-RA | 991..1919 | 6..933 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:15:26 Download gff for
BO10944.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Drep-2-RA | 991..1919 | 6..933 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:15:26 Download gff for
BO10944.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9297269..9297536 | 32..299 | 100 | -> | Plus |
2R | 9298267..9298900 | 300..933 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:28:47 Download gff for
BO10944.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5184774..5185041 | 32..299 | 100 | -> | Plus |
arm_2R | 5185772..5186405 | 300..933 | 100 | | Plus |
BO10944.complete Sequence
1480 bp (1480 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631932
> BO10944.complete
GAAGTTATCAGTCGACATGGCCAGAGAGGAGTCTCGCGGCAAGAGACCAC
TGAAAATCTGGGACAGCTGGCGGAATGTGCGCAAGGGCGTCGTAGTTGGG
ACCTTCGAGGAGCTCTTGGTCCGCGGCAAGGATAAGCTGGGGGTTCCTGC
TTCAGAACCGGTGCGCGTTGTTCTGGAGTGTGATGGAACCCAAATCGAGG
ATGGCGAATACTTTCGCACCCTGGCCAACAATACGGTGCTGCTGCTGTTA
AGGCAGGGCGAGCGCTGGTATCCCACTGGCGTCGATGTCATAAAGGCTGC
CATATCAGCTATACCGAAAATCGTCTGTGAGACGATTCATGCGCTGGAGT
TGCACGATGAGACACCGTCGTGGAAGATCATGGATAACAAAGGGCGTGTC
ACGGTCGTTCTGCACTGGGATCAGCGGCAGGGTGGAGGAAGCGGCGGCGG
AGGAGGAGGCGGTGGCGCCGGCGGCGGAGTGGGGAGCATGTGCTCCGGCC
TGGGCAGCAGCAATGGGCTGCTGTCGTCCGATAAGTACTCGCCCTCAAAG
AAGGGCCTCTCCGCGCAGAGTTCGCTGGACAACAAGTCGGTGTCGTCGCA
GTCCTCCCAGCCGCGCTATGCCAGCCCTCAAATAACGGTGATCAGCGACG
ACGGACCGGCGAGCATATACCATCCCGGTGGCGTTGTTCTGCCGCCAGGA
GTTGTGATACCCGGCGGCAGCAGGCGACTCTCCAAGCAGGGAAGCTCCTT
CGACAGCACCGTAGGCGTGGGTGTGGGAGCTGTCCATGTGCACACGCCGG
AATGCGCCCACCACGCCCACACGCCCAGCAGGGCGGGCAGTCCCAGCACC
ACCGAGTGCGACTTCCACTGCTGTGCGCTGCACGAGGAGGGGCGCAAGAT
CGCTGTGCACAAGAGCGTGGCCACGTCGCCCATCCAGGACGGAAGCAGCA
GTCCCCAGCCGCAGTCGGCACCATCGGTTATGGATCCTATGCTGGGCGGC
AGCGGTGGCGGCGGAAGCGGCAGCATGCAACGCCGCTCCTCGGGCGCCAA
GGGCCATGTGCGATTCCTGGACATCGCTCCCGAGCGGGATAGCTCCGAGA
GCGAAACGGAGAACACGGTGATGGAGGACGACAAGACGACGACGGAGAAG
TTTCTGCTGCTGATCGACCAGTTGTCGGTGGACCAGAAGCGTCACCTCAG
CATCAAGGACATCGGCATCATACTGGAACGCCTCAACTCCAAGATCCTTG
ACGTGGAGCGATTGGATCGCGAGTCCGAGTCAGACGACTGCTACAACTGG
ACGATAAAGGCGACAATACGCGGCGATGCGCTGCGCGAACTGGGCGTCAT
TTACAATGGCAATTACTATGCCATCTCTGAGCATCCTGGCTACAAGGAGG
AGCTAGAGGAGAACGGCGAGGAGGTCGAGGAGGAGGAGGAAGAGGATGAG
GAGGACAGAATTGCAAGCTTTCTAGACCAT
BO10944.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:08:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Drep-2-RC | 1449 | CG1975-PC | 1..1446 | 17..1462 | 7230 | 100 | Plus |
Drep-2-RA | 1449 | CG1975-PA | 1..1446 | 17..1462 | 7230 | 100 | Plus |
Drep-2-RD | 1494 | CG1975-PD | 57..1491 | 28..1462 | 7175 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:08:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Drep-2-RC | 5839 | CG1975-RC | 1002..2447 | 17..1462 | 7230 | 100 | Plus |
Drep-2-RA | 5229 | CG1975-RA | 1003..2448 | 17..1462 | 7230 | 100 | Plus |
Drep-2-RD | 1827 | CG1975-RD | 74..1508 | 28..1462 | 7175 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:07:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9298266..9299429 | 299..1462 | 5820 | 100 | Plus |
2R | 25286936 | 2R | 9297264..9297536 | 27..299 | 1365 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 11:08:00 has no hits.
BO10944.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:48:49 Download gff for
BO10944.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rep2-RA | 1..1449 | 17..1463 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:20:08 Download gff for
BO10944.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rep2-RA | 990..2447 | 6..1462 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:23:42 Download gff for
BO10944.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Drep-2-RA | 1003..2448 | 17..1464 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:48:49 Download gff for
BO10944.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rep2-RA | 990..2447 | 6..1462 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:39:27 Download gff for
BO10944.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Drep-2-RA | 1003..2448 | 17..1464 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:39:27 Download gff for
BO10944.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9297264..9297536 | 27..299 | 100 | -> | Plus |
2R | 9298267..9299429 | 300..1464 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:23:42 Download gff for
BO10944.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5184769..5185041 | 27..299 | 100 | -> | Plus |
arm_2R | 5185772..5186934 | 300..1464 | 99 | | Plus |
BO10944.pep Sequence
Translation from 16 to 1480
> BO10944.pep
MAREESRGKRPLKIWDSWRNVRKGVVVGTFEELLVRGKDKLGVPASEPVR
VVLECDGTQIEDGEYFRTLANNTVLLLLRQGERWYPTGVDVIKAAISAIP
KIVCETIHALELHDETPSWKIMDNKGRVTVVLHWDQRQGGGSGGGGGGGG
AGGGVGSMCSGLGSSNGLLSSDKYSPSKKGLSAQSSLDNKSVSSQSSQPR
YASPQITVISDDGPASIYHPGGVVLPPGVVIPGGSRRLSKQGSSFDSTVG
VGVGAVHVHTPECAHHAHTPSRAGSPSTTECDFHCCALHEEGRKIAVHKS
VATSPIQDGSSSPQPQSAPSVMDPMLGGSGGGGSGSMQRRSSGAKGHVRF
LDIAPERDSSESETENTVMEDDKTTTEKFLLLIDQLSVDQKRHLSIKDIG
IILERLNSKILDVERLDRESESDDCYNWTIKATIRGDALRELGVIYNGNY
YAISEHPGYKEELEENGEEVEEEEEEDEEDRIASFLDH
BO10944.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:31:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Drep-2-PC | 482 | CG1975-PC | 1..482 | 1..482 | 2520 | 100 | Plus |
Drep-2-PA | 482 | CG1975-PA | 1..482 | 1..482 | 2520 | 100 | Plus |
Drep-2-PD | 497 | CG1975-PD | 17..497 | 2..482 | 2503 | 99.6 | Plus |
Drep-2-PB | 549 | CG1975-PB | 72..549 | 5..482 | 2501 | 100 | Plus |