Clone BO10944 Report

Search the DGRC for BO10944

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:109
Well:44
Vector:pDNR-Dual
Associated Gene/TranscriptDrep-2-RA
Protein status:BO10944.pep: validated full length
Sequenced Size:1480

Clone Sequence Records

BO10944.3prime Sequence

948 bp (866 high quality bases) assembled on 2006-04-19

> BO10944.3prime
ATGGTCTAGAAAGCTTGCAATTCTGTCCTCCTCATCCTCTTCCTCCTCCT
CCTCGACCTCCTCGCCGTTCTCCTCTAGCTCCTCCTTGTAGCCAGGATGC
TCAGAGATGGCATAGTAATTGCCATTGTAAATGACGCCCAGTTCGCGCAG
CGCATCGCCGCGTATTGTCGCCTTTATCGTCCAGTTGTAGCAGTCGTCTG
ACTCGGACTCGCGATCCAATCGCTCCACGTCAAGGATCTTGGAGTTGAGG
CGTTCCAGTATGATGCCGATGTCCTTGATGCTGAGGTGACGCTTCTGGTC
CACCGACAACTGGTCGATCAGCAGCAGAAACTTCTCCGTCGTCGTCTTGT
CGTCCTCCATCACCGTGTTCTCCGTTTCGCTCTCGGAGCTATCCCGCTCG
GGAGCGATGTCCAGGAATCGCACATGGCCCTTGGCGCCCGAGGAGCGGCG
TTGCATGCTGCCGCTTCCGCCGCCACCGCTGCCGCCCAGCATAGGATCCA
TAACCGATGGTGCCGACTGCGGCTGGGGACTGCTGCTTCCGTCCTGGATG
GGCGACGTGGCCACGCTCTTGTGCACAGCGATCTTGCGCCCCTCCTCGTG
CAGCGCACAGCAGTGGAAGTCGCACTCGGTGGTGCTGGGACTGCCCGCCC
TGCTGGGCGTGTGGGCGTGGTGGGCGCATTCCGGCGTGTGCACATGGACA
GCTCCCACACCCACGCCTACGGTGCTGTCGAAGGAGCTTCCCTGCTTGGA
GAGTCGCCTGCTGCCGCCGGGTATCACAACTCCTGGCGGCAGAACAACGC
CACCGGGATGGTATATGCTCGCCGGTCCGTCGTCGCTGATCACCGTTATT
TGAGGGCTGGCATAGCGCGGCTGGGAGGACTGCGACGACACCGACTTGTT
GTCCAGCGAACTCTGCGCGGAGAGGCCCTTCTTTGAGGGCGAGTACTT

BO10944.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:13:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG1975-PA 1449 Rep2-RA 517..1446 948..19 4650 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:02:59
Subject Length Description Subject Range Query Range Score Percent Strand
Drep-2-RC 5839 CG1975-RC 1518..2447 948..19 4650 100 Minus
Drep-2-RD 1827 CG1975-RD 579..1508 948..19 4650 100 Minus
Drep-2-RB 5203 CG1975-RB 1493..2422 948..19 4650 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:02:52
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9298500..9299429 948..19 4650 100 Minus
Blast to na_te.dros performed on 2015-02-12 01:02:56 has no hits.

BO10944.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:53:53 Download gff for BO10944.3prime
Subject Subject Range Query Range Percent Splice Strand
Rep2-PA 517..1449 18..948 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:12:40 Download gff for BO10944.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1975-PA 517..1449 18..948 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 15:55:17 Download gff for BO10944.3prime
Subject Subject Range Query Range Percent Splice Strand
Drep-2-RB 1493..2422 19..948 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:48:00 Download gff for BO10944.3prime
Subject Subject Range Query Range Percent Splice Strand
Drep-2-RB 1493..2422 19..948 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:48:00 Download gff for BO10944.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 9298500..9299429 19..948 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 15:55:17 Download gff for BO10944.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5186005..5186934 19..948 100   Minus

BO10944.5prime Sequence

933 bp (907 high quality bases) assembled on 2006-04-19

> BO10944.5prime
GAAGTTATCAGTCGACATGGCCAGAGAGGAGTCTCGCGGCAAGAGACCAC
TGAAAATCTGGGACAGCTGGCGGAATGTGCGCAAGGGCGTCGTAGTTGGG
ACCTTCGAGGAGCTCTTGGTCCGCGGCAAGGATAAGCTGGGGGTTCCTGC
TTCAGAACCGGTGCGCGTTGTTCTGGAGTGTGATGGAACCCAAATCGAGG
ATGGCGAATACTTTCGCACCCTGGCCAACAATACGGTGCTGCTGCTGTTA
AGGCAGGGCGAGCGCTGGTATCCCACTGGCGTCGATGTCATAAAGGCTGC
CATATCAGCTATACCGAAAATCGTCTGTGAGACGATTCATGCGCTGGAGT
TGCACGATGAGACACCGTCGTGGAAGATCATGGATAACAAAGGGCGTGTC
ACGGTCGTTCTGCACTGGGATCAGCGGCAGGGTGGAGGAAGCGGCGGCGG
AGGAGGAGGCGGTGGCGCCGGCGGCGGAGTGGGGAGCATGTGCTCCGGCC
TGGGCAGCAGCAATGGGCTGCTGTCGTCCGATAAGTACTCGCCCTCAAAG
AAGGGCCTCTCCGCGCAGAGTTCGCTGGACAACAAGTCGGTGTCGTCGCA
GTCCTCCCAGCCGCGCTATGCCAGCCCTCAAATAACGGTGATCAGCGACG
ACGGACCGGCGAGCATATACCATCCCGGTGGCGTTGTTCTGCCGCCAGGA
GTTGTGATACCCGGCGGCAGCAGGCGACTCTCCAAGCAGGGAAGCTCCTT
CGACAGCACCGTAGGCGTGGGTGTGGGAGCTGTCCATGTGCACACGCCGG
AATGCGCCCACCACGCCCACACGCCCAGCAGGGCGGGCAGTCCCAGCACC
ACCGAGTGCGACTTCCACTGCTGTGCGCTGCACGAGGAGGGGCGCAAGAT
CGCTGTGCACAAGAGCGTGGCCACGTCGCCCAT

BO10944.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:13:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG1975-PA 1449 Rep2-RA 1..917 17..933 4585 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:49:59
Subject Length Description Subject Range Query Range Score Percent Strand
Drep-2-RC 5839 CG1975-RC 1002..1918 17..933 4585 100 Plus
Drep-2-RA 5229 CG1975-RA 1003..1919 17..933 4585 100 Plus
Drep-2-RD 1827 CG1975-RD 74..979 28..933 4530 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:49:57
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9298266..9298900 299..933 3175 100 Plus
2R 25286936 2R 9297264..9297536 27..299 1365 100 Plus
Blast to na_te.dros performed on 2015-02-10 23:49:58 has no hits.

BO10944.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:53:54 Download gff for BO10944.5prime
Subject Subject Range Query Range Percent Splice Strand
Rep2-PA 1..917 17..933 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:12:41 Download gff for BO10944.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1975-PA 1..917 17..933 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:28:47 Download gff for BO10944.5prime
Subject Subject Range Query Range Percent Splice Strand
Drep-2-RA 991..1919 6..933 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:15:26 Download gff for BO10944.5prime
Subject Subject Range Query Range Percent Splice Strand
Drep-2-RA 991..1919 6..933 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:15:26 Download gff for BO10944.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9297269..9297536 32..299 100 -> Plus
2R 9298267..9298900 300..933 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:28:47 Download gff for BO10944.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5184774..5185041 32..299 100 -> Plus
arm_2R 5185772..5186405 300..933 100   Plus

BO10944.complete Sequence

1480 bp (1480 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ631932

> BO10944.complete
GAAGTTATCAGTCGACATGGCCAGAGAGGAGTCTCGCGGCAAGAGACCAC
TGAAAATCTGGGACAGCTGGCGGAATGTGCGCAAGGGCGTCGTAGTTGGG
ACCTTCGAGGAGCTCTTGGTCCGCGGCAAGGATAAGCTGGGGGTTCCTGC
TTCAGAACCGGTGCGCGTTGTTCTGGAGTGTGATGGAACCCAAATCGAGG
ATGGCGAATACTTTCGCACCCTGGCCAACAATACGGTGCTGCTGCTGTTA
AGGCAGGGCGAGCGCTGGTATCCCACTGGCGTCGATGTCATAAAGGCTGC
CATATCAGCTATACCGAAAATCGTCTGTGAGACGATTCATGCGCTGGAGT
TGCACGATGAGACACCGTCGTGGAAGATCATGGATAACAAAGGGCGTGTC
ACGGTCGTTCTGCACTGGGATCAGCGGCAGGGTGGAGGAAGCGGCGGCGG
AGGAGGAGGCGGTGGCGCCGGCGGCGGAGTGGGGAGCATGTGCTCCGGCC
TGGGCAGCAGCAATGGGCTGCTGTCGTCCGATAAGTACTCGCCCTCAAAG
AAGGGCCTCTCCGCGCAGAGTTCGCTGGACAACAAGTCGGTGTCGTCGCA
GTCCTCCCAGCCGCGCTATGCCAGCCCTCAAATAACGGTGATCAGCGACG
ACGGACCGGCGAGCATATACCATCCCGGTGGCGTTGTTCTGCCGCCAGGA
GTTGTGATACCCGGCGGCAGCAGGCGACTCTCCAAGCAGGGAAGCTCCTT
CGACAGCACCGTAGGCGTGGGTGTGGGAGCTGTCCATGTGCACACGCCGG
AATGCGCCCACCACGCCCACACGCCCAGCAGGGCGGGCAGTCCCAGCACC
ACCGAGTGCGACTTCCACTGCTGTGCGCTGCACGAGGAGGGGCGCAAGAT
CGCTGTGCACAAGAGCGTGGCCACGTCGCCCATCCAGGACGGAAGCAGCA
GTCCCCAGCCGCAGTCGGCACCATCGGTTATGGATCCTATGCTGGGCGGC
AGCGGTGGCGGCGGAAGCGGCAGCATGCAACGCCGCTCCTCGGGCGCCAA
GGGCCATGTGCGATTCCTGGACATCGCTCCCGAGCGGGATAGCTCCGAGA
GCGAAACGGAGAACACGGTGATGGAGGACGACAAGACGACGACGGAGAAG
TTTCTGCTGCTGATCGACCAGTTGTCGGTGGACCAGAAGCGTCACCTCAG
CATCAAGGACATCGGCATCATACTGGAACGCCTCAACTCCAAGATCCTTG
ACGTGGAGCGATTGGATCGCGAGTCCGAGTCAGACGACTGCTACAACTGG
ACGATAAAGGCGACAATACGCGGCGATGCGCTGCGCGAACTGGGCGTCAT
TTACAATGGCAATTACTATGCCATCTCTGAGCATCCTGGCTACAAGGAGG
AGCTAGAGGAGAACGGCGAGGAGGTCGAGGAGGAGGAGGAAGAGGATGAG
GAGGACAGAATTGCAAGCTTTCTAGACCAT

BO10944.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:08:01
Subject Length Description Subject Range Query Range Score Percent Strand
Drep-2-RC 1449 CG1975-PC 1..1446 17..1462 7230 100 Plus
Drep-2-RA 1449 CG1975-PA 1..1446 17..1462 7230 100 Plus
Drep-2-RD 1494 CG1975-PD 57..1491 28..1462 7175 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:08:02
Subject Length Description Subject Range Query Range Score Percent Strand
Drep-2-RC 5839 CG1975-RC 1002..2447 17..1462 7230 100 Plus
Drep-2-RA 5229 CG1975-RA 1003..2448 17..1462 7230 100 Plus
Drep-2-RD 1827 CG1975-RD 74..1508 28..1462 7175 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:07:59
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9298266..9299429 299..1462 5820 100 Plus
2R 25286936 2R 9297264..9297536 27..299 1365 100 Plus
Blast to na_te.dros performed on 2014-11-27 11:08:00 has no hits.

BO10944.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:48:49 Download gff for BO10944.complete
Subject Subject Range Query Range Percent Splice Strand
Rep2-RA 1..1449 17..1463 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:20:08 Download gff for BO10944.complete
Subject Subject Range Query Range Percent Splice Strand
Rep2-RA 990..2447 6..1462 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:23:42 Download gff for BO10944.complete
Subject Subject Range Query Range Percent Splice Strand
Drep-2-RA 1003..2448 17..1464 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:48:49 Download gff for BO10944.complete
Subject Subject Range Query Range Percent Splice Strand
Rep2-RA 990..2447 6..1462 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:39:27 Download gff for BO10944.complete
Subject Subject Range Query Range Percent Splice Strand
Drep-2-RA 1003..2448 17..1464 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:39:27 Download gff for BO10944.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9297264..9297536 27..299 100 -> Plus
2R 9298267..9299429 300..1464 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:23:42 Download gff for BO10944.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5184769..5185041 27..299 100 -> Plus
arm_2R 5185772..5186934 300..1464 99   Plus

BO10944.pep Sequence

Translation from 16 to 1480

> BO10944.pep
MAREESRGKRPLKIWDSWRNVRKGVVVGTFEELLVRGKDKLGVPASEPVR
VVLECDGTQIEDGEYFRTLANNTVLLLLRQGERWYPTGVDVIKAAISAIP
KIVCETIHALELHDETPSWKIMDNKGRVTVVLHWDQRQGGGSGGGGGGGG
AGGGVGSMCSGLGSSNGLLSSDKYSPSKKGLSAQSSLDNKSVSSQSSQPR
YASPQITVISDDGPASIYHPGGVVLPPGVVIPGGSRRLSKQGSSFDSTVG
VGVGAVHVHTPECAHHAHTPSRAGSPSTTECDFHCCALHEEGRKIAVHKS
VATSPIQDGSSSPQPQSAPSVMDPMLGGSGGGGSGSMQRRSSGAKGHVRF
LDIAPERDSSESETENTVMEDDKTTTEKFLLLIDQLSVDQKRHLSIKDIG
IILERLNSKILDVERLDRESESDDCYNWTIKATIRGDALRELGVIYNGNY
YAISEHPGYKEELEENGEEVEEEEEEDEEDRIASFLDH

BO10944.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:31:28
Subject Length Description Subject Range Query Range Score Percent Strand
Drep-2-PC 482 CG1975-PC 1..482 1..482 2520 100 Plus
Drep-2-PA 482 CG1975-PA 1..482 1..482 2520 100 Plus
Drep-2-PD 497 CG1975-PD 17..497 2..482 2503 99.6 Plus
Drep-2-PB 549 CG1975-PB 72..549 5..482 2501 100 Plus