Clone BO10946 Report

Search the DGRC for BO10946

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:109
Well:46
Vector:pDNR-Dual
Associated Gene/TranscriptDok-RA
Protein status:BO10946.pep: validated full length
Sequenced Size:1900

Clone Sequence Records

BO10946.3prime Sequence

909 bp (887 high quality bases) assembled on 2006-04-19

> BO10946.3prime
ATGGTCTAGAAAGCTTGCCACTCGCTTCGGTTTGCTGACCATTGTGTAGT
TGAGGCCATTATAGCTGCGATGATCGATGGCTGCCGCCTCGAGATTGCCG
CCTTTGTTGGCCGTTGCAGTTGTGATGGTGCTACTACCGCCGCTGATATT
GCTATTGGAGATTCCTAGATTATTATTGTTCGTAGTGGTGCTAGCCTTTC
GCAGCACCCCGTAACCGCGATGACTGTCATCGGCTTTACGGAAGCTTTCC
GTATCGGGACTAGCGATCAATTCGTATTCATTGGGTGGCGGTGGACTGCA
TCGTATGCGATTACCGGGTGTGACATTCACAATGGTCTTATAGCCACTCG
ATGTCTTATTGTTCGGCGATAGAAAGTCTAAACGATCGTAATTCGATTCA
CTAATGGATGTGGCGCTAGTGCAACCCTCACCGATATCGATGTCTATGAT
CTTGGGTGTATTTTGGCTGCCACAGGTGGATTTCGATACTGATCGCTGGC
GTACAAATTCTGAGGTATCGCAGAGTATGGGCATACGTTCACTGTGCCTA
ACATCGCCCACGCCCCTTGTGCGCCACGCCTCTGTGATATTTTCGATGCA
CTCGTAATCCCGCTCCGGAGGCGGTGCTTTCGAGGCGCTCTCATTTCGCA
GCGGCAAGTCGGGCGGTAAATCGGCTGCTGTTTCCGGCAGGGATATCGAT
TCGCCTTCCAGGGGTTTCAGTATCACTGAACTGTTCACATCGGAATTGGC
GGATGGCGAAGATATCGTAGTTATGGCCACAGGTTCATATTTCACAATAT
TCCTGTATTTATCACAATGGGTTGTCGGGCTTTTGCGTGGCGGTTTGTTG
GGAATGTGTTTGCTGCTGCTGCTGTTGCTATTGCTATTTGCGGGCACGGA
TAGCGTGAT

BO10946.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:13:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG2079-PA 1869 l(1)G0331-RA 976..1866 909..19 4455 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 02:31:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dok-RA 3487 CG2079-RA 1351..2241 909..19 4455 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 02:30:52
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7326670..7327560 909..19 4455 100 Minus
Blast to na_te.dros performed 2015-02-09 02:30:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2486..2622 887..752 133 58.3 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6834..6890 885..829 131 74.1 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2620..2863 885..638 129 55.2 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1543..1605 885..822 128 68.8 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2332..2400 888..821 125 70 Minus
Tirant 8526 Tirant TIRANT 8526bp 912..946 536..502 121 82.9 Minus
Tirant 8526 Tirant TIRANT 8526bp 1014..1048 536..502 121 82.9 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2392..2433 888..844 119 77.8 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2356..2424 885..821 118 69.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6741..6797 885..829 113 70.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6762..6818 885..829 113 70.7 Minus
Tirant 8526 Tirant TIRANT 8526bp 810..844 536..502 112 80 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6816..6846 885..855 110 83.9 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6858..6902 888..844 108 71.1 Minus

BO10946.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:53:57 Download gff for BO10946.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2079-PA 976..1869 15..909 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:12:45 Download gff for BO10946.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2079-PA 976..1869 15..909 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 07:47:34 Download gff for BO10946.3prime
Subject Subject Range Query Range Percent Splice Strand
Dok-RA 1351..2244 15..909 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 05:21:37 Download gff for BO10946.3prime
Subject Subject Range Query Range Percent Splice Strand
Dok-RA 1351..2244 15..909 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 05:21:37 Download gff for BO10946.3prime
Subject Subject Range Query Range Percent Splice Strand
X 7326670..7327563 15..909 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 07:47:34 Download gff for BO10946.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 7220703..7221596 15..909 99   Minus

BO10946.5prime Sequence

923 bp (848 high quality bases) assembled on 2006-04-19

> BO10946.5prime
GAAGTTATCAGTCGACATGGATGTTGAAATACCTGTTTTGGCTGGATATC
TTAATGTGCCGACCCAAACTGGATTTTCGCTAAATCGCATCTCGAAAAAG
AAAGCATGCAGTCGCTACTGTTTGCTATTCAAGGCCAGTCGGCATGGGAT
TGCCCGCCTGGAGATGTGCGAAAGCAAGGAGGACCGGAACCCCAAAATCT
TCACCCTCGAAAACTGTGTGAAGATCACTCAGGAGCCGCCTCCCGAACGC
CTCATTCACATTGTCAAGCGGCAGGCTACCCTAACACTGAGCACAAGTAG
CGAGGAGGAGCTCAAGGATTGGATCACCGCCCTGCAAACGGTGGCCTTCT
GTGACACCTCACCATCGGGGGGAATCGGGGCCATCGAGGAGGACAACGAC
CTCTACTGCAGCTCCTTTGATGGCTTGTTCATTATCACGTTGATTCCATC
CGAGGCCTCCATTCGTTGCTGCATTGAACCTAAGACATATATGCTCCAAA
TGACGCCCACTGAACTTCAGTTGAAATCGGAGGATTTGGGCGCCACAATC
GCCATGTGGCCATATCGTTTCATTAGGAAGTACGGCTATCGCGATGGCAA
GTTCACCTTTGAGGCGGGCAGAAAATGCACCACCGGCGAAGGCGTTTTCA
CCCTGGATCACACCAATCCACAGGAGGTATTCCGCTGCATGTCCGCCAAG
ATGAAGTCGATGAAGAAACTGATTAGCGGCGATAGTCTGAGCACCTTGGA
GTGCGGTGAGAATCAGTTTAGTGCGGCAGCTGGCATGGAGCCCGGTTCGC
GAAGCCCACTGCCACCATCACCGTCGAGTAATCCCCACGGTGGCGAGTTC
GAGATCAACTCAACGCAAAGCTGCATATCCCTGAAGGGCTTCATTAGCTC
TAACGATTCTCTTAATAACTTCT

BO10946.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:13:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG2079-PA 1869 l(1)G0331-RA 1..907 17..923 4510 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:04:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dok-RA 3487 CG2079-RA 376..1282 17..923 4520 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:04:26
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7326097..7326601 419..923 2510 99.8 Plus
X 23542271 X 7325534..7325854 99..419 1605 100 Plus
X 23542271 X 7324589..7324672 17..100 420 100 Plus
Blast to na_te.dros performed on 2015-02-13 08:04:29 has no hits.

BO10946.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:53:58 Download gff for BO10946.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2079-PA 1..907 17..923 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:12:47 Download gff for BO10946.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2079-PA 1..907 17..923 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:35:23 Download gff for BO10946.5prime
Subject Subject Range Query Range Percent Splice Strand
Dok-RA 370..1282 9..923 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:05:39 Download gff for BO10946.5prime
Subject Subject Range Query Range Percent Splice Strand
Dok-RA 370..1282 9..923 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:05:39 Download gff for BO10946.5prime
Subject Subject Range Query Range Percent Splice Strand
X 7324583..7324672 9..100 95 -> Plus
X 7325536..7325853 101..418 100 -> Plus
X 7326097..7326601 419..923 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:35:23 Download gff for BO10946.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 7219569..7219886 101..418 100 -> Plus
arm_X 7218616..7218705 9..100 95 -> Plus
arm_X 7220130..7220634 419..923 99   Plus

BO10946.complete Sequence

1900 bp (1900 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ631933

> BO10946.complete
GAAGTTATCAGTCGACATGGATGTTGAAATACCTGTTTTGGCTGGATATC
TTAATGTGCCGACCCAAACTGGATTTTCGCTAAATCGCATCTCGAAAAAG
AAAGCATGCAGTCGCTACTGTTTGCTATTCAAGGCCAGTCGGCATGGGAT
TGCCCGCCTGGAGATGTGCGAAAGCAAGGAGGACCGGAACCCCAAAATCT
TCACCCTCGAAAACTGTGTGAAGATCACTCAGGAGCCGCCTCCCGAACGC
CTCATTCACATTGTCAAGCGGCAGGCTACCCTAACACTGAGCACAAGTAG
CGAGGAGGAGCTCAAGGATTGGATCACCGCCCTGCAAACGGTGGCCTTCT
GTGACACCTCACCATCGGGGGGAATCGGGGCCATCGAGGAGGACAACGAC
CTCTACTGCAGCTCCTTTGATGGCTTGTTCATTATCACGTTGATTCCATC
CGAGGCCTCCATTCGTTGCTGCATTGAACCTAAGACATATATGCTCCAAA
TGACGCCCACTGAACTTCAGTTGAAATCGGAGGATTTGGGCGCCACAATC
GCCATGTGGCCATATCGTTTCATTAGGAAGTACGGCTATCGCGATGGCAA
GTTCACCTTTGAGGCGGGCAGAAAATGCACCACCGGCGAAGGCGTTTTCA
CCCTGGATCACACCAATCCACAGGAGGTATTCCGCTGCATGTCCGCCAAG
ATGAAGTCGATGAAGAAACTGATTAGCGGCGATAGTCTGAGCACCTTGGA
GTGCGGTGAGAATCAGTTTAGTGCGGCAGCTGGCATGGAGCCCGGTTCGC
GAAGCCCACTGCCACCATCACCGTCGAGTAATCCCCACGGTGGCGAGTTC
GAGATCAACTCAACGCAAAGCTGCATATCCCTGAGGGGCTTCATTAGCTC
TAACGATTCTCTTAATAACTTCTCGGCGGGTGGAGGTGGAGCAAGTGGCG
CCACAGCAACGGGTGGAGGCGTTTTAGGAAGTACCGGAGGAATCACGCTA
TCCGTGCCCGCAAATAGCAATAGCAACAGCAGCAGCAGCAAACACATTCC
CAACAAACCGCCACGCAAAAGCCCGACAACCCATTGTGATAAATACAGGA
ATATTGTGAAATATGAACCTGTGGCCATAACTACGATATCTTCGCCATCC
GCCAATTCCGATGTGAACAGTTCAGTGATACTGAAACCCCTGGAAGGCGA
ATCGATATCCCTGCCGGAAACAGCAGCCGATTTACCGCCCGACTTGCCGC
TGCGAAATGAGAGCGCCTCGAAAGCACCGCCTCCGGAGCGGGATTACGAG
TGCATCGAAAATATCACAGAGGCGTGGCGCACAAGGGGCGTGGGCGATGT
TAGGCACAGTGAACGTATGCCCATACTCTGCGATACCTCAGAATTTGTAC
GCCAGCGATCAGTATCGAAATCCACCTGTGGCAGCCAAAATACACCCAAG
ATCATAGACATCGATATCGGTGAGGGTTGCACTAGCGCCACATCCATTAG
TGAATCGAATTACGATCGTTTAGACTTTCTATCGCCGAACAATAAGACAT
CGAGTGGCTATAAGACCATTGTGAATGTCACACCCGGTAATCGCATACGA
TGCAGTCCACCGCCACCCAATGAATACGAATTGATCGCTAGTCCCGATAC
GGAAAGCTTCCGTAAAGCCGATGACAGTCATCGCGGTTACGGGGTGCTGC
GAAAGGCTAGCACCACTACGAACAATAATAATCTAGGAATCTCCAATAGC
AATATCAGCGGCGGTAGTAGCACCATCACAACTGCAACGGCCAACAAAGG
CGGCAATCTCGAGGCGGCAGCCATCGATCATCGCAGCTATAATGGCCTCA
ACTACACAATGGTCAGCAAACCGAAGCGAGTGGCAAGCTTTCTAGACCAT

BO10946.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:51:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dok-RA 1869 CG2079-PA 1..1866 17..1882 9330 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:51:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dok-RA 3487 CG2079-RA 376..2241 17..1882 9330 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:51:25
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7326097..7327560 419..1882 7320 100 Plus
X 23542271 X 7325534..7325854 99..419 1605 100 Plus
X 23542271 X 7324589..7324672 17..100 420 100 Plus
Blast to na_te.dros performed 2014-11-27 06:51:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6763..6890 950..1072 141 61.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2486..2622 1014..1149 133 58.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2620..2863 1016..1263 129 55.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2332..2400 1013..1080 125 70 Plus
Tirant 8526 Tirant TIRANT 8526bp 912..946 1365..1399 121 82.9 Plus
Tirant 8526 Tirant TIRANT 8526bp 1014..1048 1365..1399 121 82.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2320..2433 940..1057 120 61.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2356..2424 1016..1080 118 69.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6741..6797 1016..1072 113 70.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6762..6818 1016..1072 113 70.7 Plus

BO10946.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:56:13 Download gff for BO10946.complete
Subject Subject Range Query Range Percent Splice Strand
Dok-RA 1..1869 17..1886 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:13:12 Download gff for BO10946.complete
Subject Subject Range Query Range Percent Splice Strand
Dok-RA 366..2240 9..1886 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:56:37 Download gff for BO10946.complete
Subject Subject Range Query Range Percent Splice Strand
Dok-RA 376..2241 17..1884 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:56:13 Download gff for BO10946.complete
Subject Subject Range Query Range Percent Splice Strand
Dok-RA 366..2240 9..1886 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:56:14 Download gff for BO10946.complete
Subject Subject Range Query Range Percent Splice Strand
Dok-RA 376..2241 17..1884 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:56:14 Download gff for BO10946.complete
Subject Subject Range Query Range Percent Splice Strand
X 7324589..7324672 17..100 100 -> Plus
X 7325536..7325853 101..418 100 -> Plus
X 7326097..7327560 419..1884 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:56:37 Download gff for BO10946.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 7218622..7218705 17..100 100 -> Plus
arm_X 7219569..7219886 101..418 100 -> Plus
arm_X 7220130..7221593 419..1884 99   Plus

BO10946.pep Sequence

Translation from 16 to 1900

> BO10946.pep
MDVEIPVLAGYLNVPTQTGFSLNRISKKKACSRYCLLFKASRHGIARLEM
CESKEDRNPKIFTLENCVKITQEPPPERLIHIVKRQATLTLSTSSEEELK
DWITALQTVAFCDTSPSGGIGAIEEDNDLYCSSFDGLFIITLIPSEASIR
CCIEPKTYMLQMTPTELQLKSEDLGATIAMWPYRFIRKYGYRDGKFTFEA
GRKCTTGEGVFTLDHTNPQEVFRCMSAKMKSMKKLISGDSLSTLECGENQ
FSAAAGMEPGSRSPLPPSPSSNPHGGEFEINSTQSCISLRGFISSNDSLN
NFSAGGGGASGATATGGGVLGSTGGITLSVPANSNSNSSSSKHIPNKPPR
KSPTTHCDKYRNIVKYEPVAITTISSPSANSDVNSSVILKPLEGESISLP
ETAADLPPDLPLRNESASKAPPPERDYECIENITEAWRTRGVGDVRHSER
MPILCDTSEFVRQRSVSKSTCGSQNTPKIIDIDIGEGCTSATSISESNYD
RLDFLSPNNKTSSGYKTIVNVTPGNRIRCSPPPPNEYELIASPDTESFRK
ADDSHRGYGVLRKASTTTNNNNLGISNSNISGGSSTITTATANKGGNLEA
AAIDHRSYNGLNYTMVSKPKRVASFLDH

BO10946.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:52:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dok-PA 622 CG2079-PA 1..622 1..622 3252 100 Plus