Clone BO10953 Report

Search the DGRC for BO10953

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:109
Well:53
Vector:pDNR-Dual
Associated Gene/TranscriptCG6659-RA
Protein status:BO10953.pep: validated full length
Sequenced Size:2650

Clone Sequence Records

BO10953.3prime Sequence

838 bp (768 high quality bases) assembled on 2006-04-19

> BO10953.3prime
ATGGTCTAGAAAGCTTGCTATGGACATCTCGGGCATCTTGTTGTGCTTGA
GGTTGATCTGGACGCTCTGCGAGAACATCTTGATAATGCCGTAGTGGTCG
TTGGCGAACACTTTCAGGAAGCTGGGCACGTTCTTGTGGAGCAGCTCGTG
GCAGAACTGTGGGTATTTTTGGTAGGCCGGCTGCTTGTCATCCCAAATGG
CCAGCAGATCGCAATCGTCGCGCACTTCGTTGGTGCACTCGTCCAGCGAT
ATGATCAAGTACTGGATCTTCAGCTGGGCGCACTGGTTGTAGATATCCGA
CGACTGCTGACGACTGTACACCGAGTACACGTGCTCCGTGCGCTCCGCTA
TCTGACGCATCTCCAGGTGCGCATGGTTGACTATGGGCCGTTTGGTGGTC
AAGTGCACGGTGCCGATGATGTCCACGGGGCCGGCAAAGACCGCATCTCG
CTCTGTGTTCAGCTTGATCCACTCGAGCATGCTGTCCAGGTCGTCACCGC
TCTTGGAGTAGCGCGTGGGGAAGTACTCTTCGCGAATGTTCACCATGCCC
GGATCGAACATGCTGAGCAGGAAGACGGCCAGCGAGACCGACCAGAAGAT
GTTGCGCTGGCGATGGTACCACAGTTTGGAGCAGACGGTGGGTGCGATGA
CGCAGCCCTGCGTGAAGCTGAGGAAGAAGAGCTTGCGCACGGCGAGTCCG
ATAAGGGTGAAGACTAGCATCTGCAGGAAGCTGTACACGTAGTGCATGTT
GAGGATCTGTGCGTTGGCCGTGGGCACCACGGAGCTGCGTCTGGAGGAGC
TGCGCTTCCTCTGTCGATGGCCACTCGAGTTTGAGCCG

BO10953.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:13:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG6659-PA 2619 CG6659-RA 1797..2616 838..19 4100 100 Minus
CG6659-PB 2274 CG6659-RB 1452..2271 838..19 4100 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:09:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG6659-RB 3426 CG6659-RB 2010..2829 838..19 4100 100 Minus
CG6659-RA 3356 CG6659-RA 1940..2759 838..19 4100 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:09:13
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18654807..18655104 541..838 1490 100 Plus
X 23542271 X 18653989..18654191 19..221 1015 100 Plus
X 23542271 X 18654546..18654741 346..541 980 100 Plus
X 23542271 X 18654296..18654421 221..346 630 100 Plus
Blast to na_te.dros performed on 2015-02-12 13:09:17 has no hits.

BO10953.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:54:07 Download gff for BO10953.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6659-PB 1452..2274 18..838 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:13:01 Download gff for BO10953.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6659-PB 1452..2274 18..838 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:33:19 Download gff for BO10953.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6659-RA 1940..2759 19..838 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:40:37 Download gff for BO10953.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6659-RA 1940..2759 19..838 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:40:37 Download gff for BO10953.3prime
Subject Subject Range Query Range Percent Splice Strand
X 18653989..18654190 19..220 100 <- Plus
X 18654296..18654421 221..346 100 <- Plus
X 18654547..18654740 347..540 100 <- Plus
X 18654807..18655104 541..838 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:33:19 Download gff for BO10953.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 18548022..18548223 19..220 100 <- Plus
arm_X 18548329..18548454 221..346 100 <- Plus
arm_X 18548580..18548773 347..540 100 <- Plus
arm_X 18548840..18549137 541..838 100   Plus

BO10953.5prime Sequence

845 bp (844 high quality bases) assembled on 2006-04-19

> BO10953.5prime
GAAGTTATCAGTCGACATGCGCGAGCCCAACCTGTACGTGATCCTGTCGC
ACGCGCTGATCGGCTGCGGCTTCTTCTTCCTATACGTGCAGCATGTGCGC
GTGATCTTCGAGACGCGCACCAACATCCAGCAGCTCAATCAGCTGGAGCG
GGAGGCGCTTCTGCGGCGCGAGGATGCCCTGTACTATGCCTTCTACAAGC
AGCTGGCCGAAGGGCCGGACTTTTGGCACGGCTACGAGCAGCTGAAGAAC
GTCACGGACATCGAGTATCCGCACAGTGTCAATGTGCTGCAGCGATTCTA
CGTGCTGCCGGAGCTGGTCACGGCGTACTTCTTTCACGTAGTGCGCTCCG
GCTTCAATCCAATGGTGCAACCGATGCAGTTCTATCTGGAGTTCGTGTGG
CTGATGGGCGGGGTAACCCTGCTGGTACTCTACCTGTACGGAACGCTGCT
CAGCGAGAACATTTTCGGTGGCATATACGGCGTAATCTCGTACCTGATGT
TCCACAGCTTCGTGGCCAAGATCTATGAGCGGCCGCTGGCGCGGGAGAAC
TTCGCCTTTCCGTTCATTTTCCTGCAGATGTTTTATCTGTGTATCTGCAT
CGGAAGGATCATACACCGACAGCGGCACACATCTCGCATGTTCATGATCT
TCGCCATGTCGCTTTTCACCGCCTGCGCCCTACTCTCCTGGCAGTTCTCC
ACCTTCATCTTCACCACCCAGATCCTGATCATGATGACGTCCTGGAACGC
GAGCGCGCTGCCCACGGCTCTGGTCAACGCCTTCGTGCTGGACTACTCGC
TGTCGCACCTGCTGGGCCACGCTCTCGCCTTTGTAATGTCGCACG

BO10953.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:14:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG6659-PA 2619 CG6659-RA 1..829 17..845 4145 100 Plus
CG6659-PB 2274 CG6659-RB 1..484 362..845 2420 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:32:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG6659-RA 3356 CG6659-RA 144..972 17..845 4145 100 Plus
CG6659-RB 3426 CG6659-RB 259..1042 62..845 3920 100 Plus
CG6659-RB 3426 CG6659-RB 92..138 17..63 235 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:32:27
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18656324..18656645 646..325 1610 100 Minus
X 23542271 X 18656711..18656976 327..62 1330 100 Minus
X 23542271 X 18656072..18656271 845..646 1000 100 Minus
X 23542271 X 18657097..18657143 63..17 235 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:32:30 has no hits.

BO10953.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:54:09 Download gff for BO10953.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6659-PA 1..829 17..845 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:13:03 Download gff for BO10953.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6659-PA 1..829 17..845 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:51:06 Download gff for BO10953.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6659-RA 137..972 9..845 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:54:10 Download gff for BO10953.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6659-RA 137..972 9..845 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:54:10 Download gff for BO10953.5prime
Subject Subject Range Query Range Percent Splice Strand
X 18656714..18656975 63..324 100 <- Minus
X 18657098..18657150 9..62 94   Minus
X 18656072..18656270 647..845 100 <- Minus
X 18656324..18656645 325..646 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:51:06 Download gff for BO10953.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 18550357..18550678 325..646 100 <- Minus
arm_X 18550105..18550303 647..845 100 <- Minus
arm_X 18550747..18551008 63..324 100 <- Minus
arm_X 18551131..18551183 9..62 94   Minus

BO10953.complete Sequence

2650 bp (2650 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ631935

> BO10953.complete
GAAGTTATCAGTCGACATGCGCGAGCCCAACCTGTACGTGATCCTGTCGC
ACGCGCTGATCGGCTGCGGCTTCTTCTTCCTATACGTGCAGCATGTGCGC
GTGATCTTCGAGACGCGCACCAACATCCAGCAGCTCAATCAGCTGGAGCG
GGAGGCGCTTCTGCGGCGCGAGGATGCCCTGTACTATGCCTTCTACAAGC
AGCTGGCCGAAGGGCCGGACTTTTGGCACGGCTACGAGCAGCTGAAGAAC
GTCACGGACATCGAGTATCCGCACAGTGTCAATGTGCTGCAGCGATTCTA
CGTGCTGCCGGAGCTGGTCACGGCGTACTTCTTTCACGTAGTGCGCTCCG
GCTTCAATCCAATGGTGCAACCGATGCAGTTCTATCTGGAGTTCGTGTGG
CTGATGGGCGGGGTAACCCTGCTGGTACTCTACCTGTACGGAACGCTGCT
CAGCGAGAACATTTTCGGTGGCATATACGGCGTAATCTCGTACCTGATGT
TCCACAGCTTCGTGGCCAAGATCTATGAGCGGCCGCTGGCGCGGGAGAAC
TTCGCCTTTCCGTTCATTTTCCTGCAGATGTTTTATCTGTGTATCTGCAT
CGGAAGGATCATACACCGACAGCGGCACACATCTCGCATGTTCATGATCT
TCGCCATGTCGCTTTTCACCGCCTGCGCCCTACTCTCCTGGCAGTTCTCC
ACCTTCATCTTCACCACCCAGATCCTGATCATGATGACGTCCTGGAACGC
GAGCGCGCTGCCCACGGCTCTGGTCAACGCCTTCGTGCTGGACTACTCGC
TGTCGCACCTGCTGGGCCACGCTCTCGCCTTTGTAATGTCGCACGGCAAC
AGCCAGCTGCTTCTCACCTGGCAGCTGAGCATCTCGCTGTTCCTATTTTT
GATTACAATGGTGCGACAGTTGCGTCACGTGCGCAGCCGGCGACTGGGAC
ACGCGCAGGATCTGCTGAACGGCGACTTATTCTCGTTGAAGTTCCTCATG
CTCACACTGCTGCTCGCCAGCAGCGTGCAGACCACGCTGATAGAGCTCTT
CAATCGGGCTGGCGTGGTCAGTGTGACGGAAGGCGACCAGCAGCACTTCT
TCGACATATGTGCCCACTGGGCTCTGCAGGTCAATGTCGGCTTTGTCGCC
CACCTTTCCGCCTGCAATCCGCAGTACGCGCGCGTCGCCTGGTCAGAATT
GTGGCAGCTGGTCAAGACGATGATTGTTAAGCCGTACTGCATGTACGGCG
TGGTCATGCTGGCCATGTTCTTCCGGCGCTGGCGCAAGAGCGGCGCCCCA
GTAAGTGCCCTCACCGAAGAGCAGCGCGAGAGAGCGCGCAAATACGTGCT
GGAAGACTTCATAGAGGAGCACTTCGTTTCCATGAGCGACATGTCTAGCA
AGGAGACGGAGAAACAGCTGTATAAGTGCTTCCGCCTGCTCAAAAGCTGC
GACTACGACTACGAGCGCTACAAGCGCGCACAGGCCAGCCTGCGTAAGGA
GCAGCCGCCCGCCCGCGACGACTTTATGCAGGATATCAAGCGGCTGCGAG
CGCAAATTAACCGCAACAGCGTCAAGCAGCGCAAGGAGCGGGCGCAGGAA
ACCAAAGAAGCGGCCACCGACGGGGCCAGCACGCCGACTGAGGAGGAGGA
TAAGGATCCGGAAGCAGAATCGGAATCGAAGAAGAAGAATCAGGAGCCAG
GTAGTGGCGAAACGGAGACCGAGTCTGCAGCAGATCCCACTGAAACGCCG
CCGTCCAGGTCCGCGGACAATGAAGAGGAGGAGGAGGAACACTCTGCCAC
CGCCGCCGGCTGCGGCTCAAACTCGAGTGGCCATCGACAGAGGAAGCGCA
GCTCCTCCAGACGCAGCTCCGTGGTGCCCACGGCCAACGCACAGATCCTC
AACATGCACTACGTGTACAGCTTCCTGCAGATGCTAGTCTTCACCCTTAT
CGGACTCGCCGTGCGCAAGCTCTTCTTCCTCAGCTTCACGCAGGGCTGCG
TCATCGCACCCACCGTCTGCTCCAAACTGTGGTACCATCGCCAGCGCAAC
ATCTTCTGGTCGGTCTCGCTGGCCGTCTTCCTGCTCAGCATGTTCGATCC
GGGCATGGTGAACATTCGCGAAGAGTACTTCCCCACGCGCTACTCCAAGA
GCGGTGACGACCTGGACAGCATGCTCGAGTGGATCAAGCTGAACACAGAG
CGAGATGCGGTCTTTGCCGGCCCCGTGGACATCATCGGCACCGTGCACTT
GACCACCAAACGGCCCATAGTCAACCATGCGCACCTGGAGATGCGTCAGA
TAGCGGAGCGCACGGAGCACGTGTACTCGGTGTACAGTCGTCAGCAGTCG
TCGGATATCTACAACCAGTGCGCCCAGCTGAAGATCCAGTACTTGATCAT
ATCGCTGGACGAGTGCACCAACGAAGTGCGCGACGATTGCGATCTGCTGG
CCATTTGGGATGACAAGCAGCCGGCCTACCAAAAATACCCACAGTTCTGC
CACGAGCTGCTCCACAAGAACGTGCCCAGCTTCCTGAAAGTGTTCGCCAA
CGACCACTACGGCATTATCAAGATGTTCTCGCAGAGCGTCCAGATCAACC
TCAAGCACAACAAGATGCCCGAGATGTCCATAGCAAGCTTTCTAGACCAT

BO10953.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:51:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG6659-RA 2619 CG6659-PA 1..2616 17..2632 13080 100 Plus
CG6659-RB 2274 CG6659-PB 1..2271 362..2632 11355 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:51:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG6659-RA 3356 CG6659-RA 144..2759 17..2632 13080 100 Plus
CG6659-RB 3426 CG6659-RB 259..2829 62..2632 12855 100 Plus
CG6659-RB 3426 CG6659-RB 92..138 17..63 235 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:51:48
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18654807..18656271 2110..646 7325 100 Minus
X 23542271 X 18656324..18656645 646..325 1610 100 Minus
X 23542271 X 18656711..18656976 327..62 1330 100 Minus
X 23542271 X 18653989..18654191 2632..2430 1015 100 Minus
X 23542271 X 18654546..18654741 2305..2110 980 100 Minus
X 23542271 X 18654296..18654421 2430..2305 630 100 Minus
X 23542271 X 18657097..18657143 63..17 235 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:51:49 has no hits.

BO10953.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:55:58 Download gff for BO10953.complete
Subject Subject Range Query Range Percent Splice Strand
CG6659-RA 1..2619 17..2633 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:12:56 Download gff for BO10953.complete
Subject Subject Range Query Range Percent Splice Strand
CG6659-RA 137..2759 9..2632 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:34:10 Download gff for BO10953.complete
Subject Subject Range Query Range Percent Splice Strand
CG6659-RA 144..2759 17..2634 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:55:58 Download gff for BO10953.complete
Subject Subject Range Query Range Percent Splice Strand
CG6659-RA 137..2759 9..2632 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:28:11 Download gff for BO10953.complete
Subject Subject Range Query Range Percent Splice Strand
CG6659-RA 144..2759 17..2634 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:28:11 Download gff for BO10953.complete
Subject Subject Range Query Range Percent Splice Strand
X 18653987..18654190 2431..2634 99 <- Minus
X 18654296..18654421 2305..2430 100 <- Minus
X 18654547..18654740 2111..2304 100 <- Minus
X 18654807..18656270 647..2110 100 <- Minus
X 18656324..18656645 325..646 100 <- Minus
X 18656714..18656975 63..324 100 <- Minus
X 18657098..18657143 17..62 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:34:10 Download gff for BO10953.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 18548020..18548223 2431..2634 99 <- Minus
arm_X 18548329..18548454 2305..2430 100 <- Minus
arm_X 18548580..18548773 2111..2304 100 <- Minus
arm_X 18548840..18550303 647..2110 100 <- Minus
arm_X 18550357..18550678 325..646 100 <- Minus
arm_X 18550747..18551008 63..324 100 <- Minus
arm_X 18551131..18551176 17..62 100   Minus

BO10953.pep Sequence

Translation from 16 to 2650

> BO10953.pep
MREPNLYVILSHALIGCGFFFLYVQHVRVIFETRTNIQQLNQLEREALLR
REDALYYAFYKQLAEGPDFWHGYEQLKNVTDIEYPHSVNVLQRFYVLPEL
VTAYFFHVVRSGFNPMVQPMQFYLEFVWLMGGVTLLVLYLYGTLLSENIF
GGIYGVISYLMFHSFVAKIYERPLARENFAFPFIFLQMFYLCICIGRIIH
RQRHTSRMFMIFAMSLFTACALLSWQFSTFIFTTQILIMMTSWNASALPT
ALVNAFVLDYSLSHLLGHALAFVMSHGNSQLLLTWQLSISLFLFLITMVR
QLRHVRSRRLGHAQDLLNGDLFSLKFLMLTLLLASSVQTTLIELFNRAGV
VSVTEGDQQHFFDICAHWALQVNVGFVAHLSACNPQYARVAWSELWQLVK
TMIVKPYCMYGVVMLAMFFRRWRKSGAPVSALTEEQRERARKYVLEDFIE
EHFVSMSDMSSKETEKQLYKCFRLLKSCDYDYERYKRAQASLRKEQPPAR
DDFMQDIKRLRAQINRNSVKQRKERAQETKEAATDGASTPTEEEDKDPEA
ESESKKKNQEPGSGETETESAADPTETPPSRSADNEEEEEEHSATAAGCG
SNSSGHRQRKRSSSRRSSVVPTANAQILNMHYVYSFLQMLVFTLIGLAVR
KLFFLSFTQGCVIAPTVCSKLWYHRQRNIFWSVSLAVFLLSMFDPGMVNI
REEYFPTRYSKSGDDLDSMLEWIKLNTERDAVFAGPVDIIGTVHLTTKRP
IVNHAHLEMRQIAERTEHVYSVYSRQQSSDIYNQCAQLKIQYLIISLDEC
TNEVRDDCDLLAIWDDKQPAYQKYPQFCHELLHKNVPSFLKVFANDHYGI
IKMFSQSVQINLKHNKMPEMSIASFLDH

BO10953.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:53:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG6659-PA 872 CG6659-PA 1..872 1..872 4555 100 Plus
CG6659-PB 757 CG6659-PB 1..757 116..872 3942 100 Plus