Clone Sequence Records
BO10953.3prime Sequence
838 bp (768 high quality bases) assembled on 2006-04-19
> BO10953.3prime
ATGGTCTAGAAAGCTTGCTATGGACATCTCGGGCATCTTGTTGTGCTTGA
GGTTGATCTGGACGCTCTGCGAGAACATCTTGATAATGCCGTAGTGGTCG
TTGGCGAACACTTTCAGGAAGCTGGGCACGTTCTTGTGGAGCAGCTCGTG
GCAGAACTGTGGGTATTTTTGGTAGGCCGGCTGCTTGTCATCCCAAATGG
CCAGCAGATCGCAATCGTCGCGCACTTCGTTGGTGCACTCGTCCAGCGAT
ATGATCAAGTACTGGATCTTCAGCTGGGCGCACTGGTTGTAGATATCCGA
CGACTGCTGACGACTGTACACCGAGTACACGTGCTCCGTGCGCTCCGCTA
TCTGACGCATCTCCAGGTGCGCATGGTTGACTATGGGCCGTTTGGTGGTC
AAGTGCACGGTGCCGATGATGTCCACGGGGCCGGCAAAGACCGCATCTCG
CTCTGTGTTCAGCTTGATCCACTCGAGCATGCTGTCCAGGTCGTCACCGC
TCTTGGAGTAGCGCGTGGGGAAGTACTCTTCGCGAATGTTCACCATGCCC
GGATCGAACATGCTGAGCAGGAAGACGGCCAGCGAGACCGACCAGAAGAT
GTTGCGCTGGCGATGGTACCACAGTTTGGAGCAGACGGTGGGTGCGATGA
CGCAGCCCTGCGTGAAGCTGAGGAAGAAGAGCTTGCGCACGGCGAGTCCG
ATAAGGGTGAAGACTAGCATCTGCAGGAAGCTGTACACGTAGTGCATGTT
GAGGATCTGTGCGTTGGCCGTGGGCACCACGGAGCTGCGTCTGGAGGAGC
TGCGCTTCCTCTGTCGATGGCCACTCGAGTTTGAGCCG
BO10953.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:13:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6659-PA | 2619 | CG6659-RA | 1797..2616 | 838..19 | 4100 | 100 | Minus |
CG6659-PB | 2274 | CG6659-RB | 1452..2271 | 838..19 | 4100 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:09:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6659-RB | 3426 | CG6659-RB | 2010..2829 | 838..19 | 4100 | 100 | Minus |
CG6659-RA | 3356 | CG6659-RA | 1940..2759 | 838..19 | 4100 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:09:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18654807..18655104 | 541..838 | 1490 | 100 | Plus |
X | 23542271 | X | 18653989..18654191 | 19..221 | 1015 | 100 | Plus |
X | 23542271 | X | 18654546..18654741 | 346..541 | 980 | 100 | Plus |
X | 23542271 | X | 18654296..18654421 | 221..346 | 630 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 13:09:17 has no hits.
BO10953.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:54:07 Download gff for
BO10953.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6659-PB | 1452..2274 | 18..838 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:13:01 Download gff for
BO10953.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6659-PB | 1452..2274 | 18..838 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:33:19 Download gff for
BO10953.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6659-RA | 1940..2759 | 19..838 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:40:37 Download gff for
BO10953.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6659-RA | 1940..2759 | 19..838 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:40:37 Download gff for
BO10953.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18653989..18654190 | 19..220 | 100 | <- | Plus |
X | 18654296..18654421 | 221..346 | 100 | <- | Plus |
X | 18654547..18654740 | 347..540 | 100 | <- | Plus |
X | 18654807..18655104 | 541..838 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:33:19 Download gff for
BO10953.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18548022..18548223 | 19..220 | 100 | <- | Plus |
arm_X | 18548329..18548454 | 221..346 | 100 | <- | Plus |
arm_X | 18548580..18548773 | 347..540 | 100 | <- | Plus |
arm_X | 18548840..18549137 | 541..838 | 100 | | Plus |
BO10953.5prime Sequence
845 bp (844 high quality bases) assembled on 2006-04-19
> BO10953.5prime
GAAGTTATCAGTCGACATGCGCGAGCCCAACCTGTACGTGATCCTGTCGC
ACGCGCTGATCGGCTGCGGCTTCTTCTTCCTATACGTGCAGCATGTGCGC
GTGATCTTCGAGACGCGCACCAACATCCAGCAGCTCAATCAGCTGGAGCG
GGAGGCGCTTCTGCGGCGCGAGGATGCCCTGTACTATGCCTTCTACAAGC
AGCTGGCCGAAGGGCCGGACTTTTGGCACGGCTACGAGCAGCTGAAGAAC
GTCACGGACATCGAGTATCCGCACAGTGTCAATGTGCTGCAGCGATTCTA
CGTGCTGCCGGAGCTGGTCACGGCGTACTTCTTTCACGTAGTGCGCTCCG
GCTTCAATCCAATGGTGCAACCGATGCAGTTCTATCTGGAGTTCGTGTGG
CTGATGGGCGGGGTAACCCTGCTGGTACTCTACCTGTACGGAACGCTGCT
CAGCGAGAACATTTTCGGTGGCATATACGGCGTAATCTCGTACCTGATGT
TCCACAGCTTCGTGGCCAAGATCTATGAGCGGCCGCTGGCGCGGGAGAAC
TTCGCCTTTCCGTTCATTTTCCTGCAGATGTTTTATCTGTGTATCTGCAT
CGGAAGGATCATACACCGACAGCGGCACACATCTCGCATGTTCATGATCT
TCGCCATGTCGCTTTTCACCGCCTGCGCCCTACTCTCCTGGCAGTTCTCC
ACCTTCATCTTCACCACCCAGATCCTGATCATGATGACGTCCTGGAACGC
GAGCGCGCTGCCCACGGCTCTGGTCAACGCCTTCGTGCTGGACTACTCGC
TGTCGCACCTGCTGGGCCACGCTCTCGCCTTTGTAATGTCGCACG
BO10953.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:14:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6659-PA | 2619 | CG6659-RA | 1..829 | 17..845 | 4145 | 100 | Plus |
CG6659-PB | 2274 | CG6659-RB | 1..484 | 362..845 | 2420 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:32:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6659-RA | 3356 | CG6659-RA | 144..972 | 17..845 | 4145 | 100 | Plus |
CG6659-RB | 3426 | CG6659-RB | 259..1042 | 62..845 | 3920 | 100 | Plus |
CG6659-RB | 3426 | CG6659-RB | 92..138 | 17..63 | 235 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:32:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18656324..18656645 | 646..325 | 1610 | 100 | Minus |
X | 23542271 | X | 18656711..18656976 | 327..62 | 1330 | 100 | Minus |
X | 23542271 | X | 18656072..18656271 | 845..646 | 1000 | 100 | Minus |
X | 23542271 | X | 18657097..18657143 | 63..17 | 235 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:32:30 has no hits.
BO10953.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:54:09 Download gff for
BO10953.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6659-PA | 1..829 | 17..845 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:13:03 Download gff for
BO10953.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6659-PA | 1..829 | 17..845 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:51:06 Download gff for
BO10953.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6659-RA | 137..972 | 9..845 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:54:10 Download gff for
BO10953.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6659-RA | 137..972 | 9..845 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:54:10 Download gff for
BO10953.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18656714..18656975 | 63..324 | 100 | <- | Minus |
X | 18657098..18657150 | 9..62 | 94 | | Minus |
X | 18656072..18656270 | 647..845 | 100 | <- | Minus |
X | 18656324..18656645 | 325..646 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:51:06 Download gff for
BO10953.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18550357..18550678 | 325..646 | 100 | <- | Minus |
arm_X | 18550105..18550303 | 647..845 | 100 | <- | Minus |
arm_X | 18550747..18551008 | 63..324 | 100 | <- | Minus |
arm_X | 18551131..18551183 | 9..62 | 94 | | Minus |
BO10953.complete Sequence
2650 bp (2650 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631935
> BO10953.complete
GAAGTTATCAGTCGACATGCGCGAGCCCAACCTGTACGTGATCCTGTCGC
ACGCGCTGATCGGCTGCGGCTTCTTCTTCCTATACGTGCAGCATGTGCGC
GTGATCTTCGAGACGCGCACCAACATCCAGCAGCTCAATCAGCTGGAGCG
GGAGGCGCTTCTGCGGCGCGAGGATGCCCTGTACTATGCCTTCTACAAGC
AGCTGGCCGAAGGGCCGGACTTTTGGCACGGCTACGAGCAGCTGAAGAAC
GTCACGGACATCGAGTATCCGCACAGTGTCAATGTGCTGCAGCGATTCTA
CGTGCTGCCGGAGCTGGTCACGGCGTACTTCTTTCACGTAGTGCGCTCCG
GCTTCAATCCAATGGTGCAACCGATGCAGTTCTATCTGGAGTTCGTGTGG
CTGATGGGCGGGGTAACCCTGCTGGTACTCTACCTGTACGGAACGCTGCT
CAGCGAGAACATTTTCGGTGGCATATACGGCGTAATCTCGTACCTGATGT
TCCACAGCTTCGTGGCCAAGATCTATGAGCGGCCGCTGGCGCGGGAGAAC
TTCGCCTTTCCGTTCATTTTCCTGCAGATGTTTTATCTGTGTATCTGCAT
CGGAAGGATCATACACCGACAGCGGCACACATCTCGCATGTTCATGATCT
TCGCCATGTCGCTTTTCACCGCCTGCGCCCTACTCTCCTGGCAGTTCTCC
ACCTTCATCTTCACCACCCAGATCCTGATCATGATGACGTCCTGGAACGC
GAGCGCGCTGCCCACGGCTCTGGTCAACGCCTTCGTGCTGGACTACTCGC
TGTCGCACCTGCTGGGCCACGCTCTCGCCTTTGTAATGTCGCACGGCAAC
AGCCAGCTGCTTCTCACCTGGCAGCTGAGCATCTCGCTGTTCCTATTTTT
GATTACAATGGTGCGACAGTTGCGTCACGTGCGCAGCCGGCGACTGGGAC
ACGCGCAGGATCTGCTGAACGGCGACTTATTCTCGTTGAAGTTCCTCATG
CTCACACTGCTGCTCGCCAGCAGCGTGCAGACCACGCTGATAGAGCTCTT
CAATCGGGCTGGCGTGGTCAGTGTGACGGAAGGCGACCAGCAGCACTTCT
TCGACATATGTGCCCACTGGGCTCTGCAGGTCAATGTCGGCTTTGTCGCC
CACCTTTCCGCCTGCAATCCGCAGTACGCGCGCGTCGCCTGGTCAGAATT
GTGGCAGCTGGTCAAGACGATGATTGTTAAGCCGTACTGCATGTACGGCG
TGGTCATGCTGGCCATGTTCTTCCGGCGCTGGCGCAAGAGCGGCGCCCCA
GTAAGTGCCCTCACCGAAGAGCAGCGCGAGAGAGCGCGCAAATACGTGCT
GGAAGACTTCATAGAGGAGCACTTCGTTTCCATGAGCGACATGTCTAGCA
AGGAGACGGAGAAACAGCTGTATAAGTGCTTCCGCCTGCTCAAAAGCTGC
GACTACGACTACGAGCGCTACAAGCGCGCACAGGCCAGCCTGCGTAAGGA
GCAGCCGCCCGCCCGCGACGACTTTATGCAGGATATCAAGCGGCTGCGAG
CGCAAATTAACCGCAACAGCGTCAAGCAGCGCAAGGAGCGGGCGCAGGAA
ACCAAAGAAGCGGCCACCGACGGGGCCAGCACGCCGACTGAGGAGGAGGA
TAAGGATCCGGAAGCAGAATCGGAATCGAAGAAGAAGAATCAGGAGCCAG
GTAGTGGCGAAACGGAGACCGAGTCTGCAGCAGATCCCACTGAAACGCCG
CCGTCCAGGTCCGCGGACAATGAAGAGGAGGAGGAGGAACACTCTGCCAC
CGCCGCCGGCTGCGGCTCAAACTCGAGTGGCCATCGACAGAGGAAGCGCA
GCTCCTCCAGACGCAGCTCCGTGGTGCCCACGGCCAACGCACAGATCCTC
AACATGCACTACGTGTACAGCTTCCTGCAGATGCTAGTCTTCACCCTTAT
CGGACTCGCCGTGCGCAAGCTCTTCTTCCTCAGCTTCACGCAGGGCTGCG
TCATCGCACCCACCGTCTGCTCCAAACTGTGGTACCATCGCCAGCGCAAC
ATCTTCTGGTCGGTCTCGCTGGCCGTCTTCCTGCTCAGCATGTTCGATCC
GGGCATGGTGAACATTCGCGAAGAGTACTTCCCCACGCGCTACTCCAAGA
GCGGTGACGACCTGGACAGCATGCTCGAGTGGATCAAGCTGAACACAGAG
CGAGATGCGGTCTTTGCCGGCCCCGTGGACATCATCGGCACCGTGCACTT
GACCACCAAACGGCCCATAGTCAACCATGCGCACCTGGAGATGCGTCAGA
TAGCGGAGCGCACGGAGCACGTGTACTCGGTGTACAGTCGTCAGCAGTCG
TCGGATATCTACAACCAGTGCGCCCAGCTGAAGATCCAGTACTTGATCAT
ATCGCTGGACGAGTGCACCAACGAAGTGCGCGACGATTGCGATCTGCTGG
CCATTTGGGATGACAAGCAGCCGGCCTACCAAAAATACCCACAGTTCTGC
CACGAGCTGCTCCACAAGAACGTGCCCAGCTTCCTGAAAGTGTTCGCCAA
CGACCACTACGGCATTATCAAGATGTTCTCGCAGAGCGTCCAGATCAACC
TCAAGCACAACAAGATGCCCGAGATGTCCATAGCAAGCTTTCTAGACCAT
BO10953.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:51:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6659-RA | 2619 | CG6659-PA | 1..2616 | 17..2632 | 13080 | 100 | Plus |
CG6659-RB | 2274 | CG6659-PB | 1..2271 | 362..2632 | 11355 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:51:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6659-RA | 3356 | CG6659-RA | 144..2759 | 17..2632 | 13080 | 100 | Plus |
CG6659-RB | 3426 | CG6659-RB | 259..2829 | 62..2632 | 12855 | 100 | Plus |
CG6659-RB | 3426 | CG6659-RB | 92..138 | 17..63 | 235 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:51:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18654807..18656271 | 2110..646 | 7325 | 100 | Minus |
X | 23542271 | X | 18656324..18656645 | 646..325 | 1610 | 100 | Minus |
X | 23542271 | X | 18656711..18656976 | 327..62 | 1330 | 100 | Minus |
X | 23542271 | X | 18653989..18654191 | 2632..2430 | 1015 | 100 | Minus |
X | 23542271 | X | 18654546..18654741 | 2305..2110 | 980 | 100 | Minus |
X | 23542271 | X | 18654296..18654421 | 2430..2305 | 630 | 100 | Minus |
X | 23542271 | X | 18657097..18657143 | 63..17 | 235 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:51:49 has no hits.
BO10953.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:55:58 Download gff for
BO10953.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6659-RA | 1..2619 | 17..2633 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:12:56 Download gff for
BO10953.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6659-RA | 137..2759 | 9..2632 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:34:10 Download gff for
BO10953.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6659-RA | 144..2759 | 17..2634 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:55:58 Download gff for
BO10953.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6659-RA | 137..2759 | 9..2632 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:28:11 Download gff for
BO10953.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6659-RA | 144..2759 | 17..2634 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:28:11 Download gff for
BO10953.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18653987..18654190 | 2431..2634 | 99 | <- | Minus |
X | 18654296..18654421 | 2305..2430 | 100 | <- | Minus |
X | 18654547..18654740 | 2111..2304 | 100 | <- | Minus |
X | 18654807..18656270 | 647..2110 | 100 | <- | Minus |
X | 18656324..18656645 | 325..646 | 100 | <- | Minus |
X | 18656714..18656975 | 63..324 | 100 | <- | Minus |
X | 18657098..18657143 | 17..62 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:34:10 Download gff for
BO10953.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18548020..18548223 | 2431..2634 | 99 | <- | Minus |
arm_X | 18548329..18548454 | 2305..2430 | 100 | <- | Minus |
arm_X | 18548580..18548773 | 2111..2304 | 100 | <- | Minus |
arm_X | 18548840..18550303 | 647..2110 | 100 | <- | Minus |
arm_X | 18550357..18550678 | 325..646 | 100 | <- | Minus |
arm_X | 18550747..18551008 | 63..324 | 100 | <- | Minus |
arm_X | 18551131..18551176 | 17..62 | 100 | | Minus |
BO10953.pep Sequence
Translation from 16 to 2650
> BO10953.pep
MREPNLYVILSHALIGCGFFFLYVQHVRVIFETRTNIQQLNQLEREALLR
REDALYYAFYKQLAEGPDFWHGYEQLKNVTDIEYPHSVNVLQRFYVLPEL
VTAYFFHVVRSGFNPMVQPMQFYLEFVWLMGGVTLLVLYLYGTLLSENIF
GGIYGVISYLMFHSFVAKIYERPLARENFAFPFIFLQMFYLCICIGRIIH
RQRHTSRMFMIFAMSLFTACALLSWQFSTFIFTTQILIMMTSWNASALPT
ALVNAFVLDYSLSHLLGHALAFVMSHGNSQLLLTWQLSISLFLFLITMVR
QLRHVRSRRLGHAQDLLNGDLFSLKFLMLTLLLASSVQTTLIELFNRAGV
VSVTEGDQQHFFDICAHWALQVNVGFVAHLSACNPQYARVAWSELWQLVK
TMIVKPYCMYGVVMLAMFFRRWRKSGAPVSALTEEQRERARKYVLEDFIE
EHFVSMSDMSSKETEKQLYKCFRLLKSCDYDYERYKRAQASLRKEQPPAR
DDFMQDIKRLRAQINRNSVKQRKERAQETKEAATDGASTPTEEEDKDPEA
ESESKKKNQEPGSGETETESAADPTETPPSRSADNEEEEEEHSATAAGCG
SNSSGHRQRKRSSSRRSSVVPTANAQILNMHYVYSFLQMLVFTLIGLAVR
KLFFLSFTQGCVIAPTVCSKLWYHRQRNIFWSVSLAVFLLSMFDPGMVNI
REEYFPTRYSKSGDDLDSMLEWIKLNTERDAVFAGPVDIIGTVHLTTKRP
IVNHAHLEMRQIAERTEHVYSVYSRQQSSDIYNQCAQLKIQYLIISLDEC
TNEVRDDCDLLAIWDDKQPAYQKYPQFCHELLHKNVPSFLKVFANDHYGI
IKMFSQSVQINLKHNKMPEMSIASFLDH
BO10953.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:53:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6659-PA | 872 | CG6659-PA | 1..872 | 1..872 | 4555 | 100 | Plus |
CG6659-PB | 757 | CG6659-PB | 1..757 | 116..872 | 3942 | 100 | Plus |