Clone BO10957 Report

Search the DGRC for BO10957

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:109
Well:57
Vector:pDNR-Dual
Associated Gene/Transcriptraps-RA
Protein status:BO10957.pep: validated full length
Sequenced Size:2008

Clone Sequence Records

BO10957.3prime Sequence

912 bp (790 high quality bases) assembled on 2006-04-19

> BO10957.3prime
ATGGTCTAGAAAGCTTGCCTTTCCAGCTCCGCCGGCTGAACCGTTGTTGT
TGCTGCGGCTATTGTTGTTATTGTTGGCATTTCGGAACGGAATCGAGGCG
CGCTGATCCTCCATGCGACCGCTCTGGACCTTCATGATCAGTGAGAAGAA
GTCCTCATCGGGGACGGTAGCTCCACGTCCGGTCTGTCCGCGTGGTGCCC
CTGGAACAGCAGCCTCTGGGACGGATCGCGGTGGTGCCTCCGCCTCTGCG
TCCATGGTGACATTGGGGCGCGGTAACTCGGACCGCTGCTCCTCCAGACG
CGAGCCTTGGCAGCGCATAAGCATGTCTAGGAAGTCATCATCGGGCTGCT
GCGTAGTGGTGGCGCTCCTGGCGAGCGGCCCATGTCCAATGGCTGATGGA
TTCGCCGACGACGGTGACTTGAGGCCAGGCAGGTTGGTGGGATCCACGAA
CAACGAGTTCTGCTGCACAAGCGGCTTACGCGTGGCGCCAGTGGCCACCG
CCGGAGCTCCGGCGGGATTCACCTTGATCGAACAGCGCTGGTCATCCATG
CGCTTCGACTGCGACCGCGAAAGCATCTCGAAAAAGTCGTCGTCTTTGGC
TTTCCTGGTCGCCTGTGCTCGTAGCTTTTCCTCCTGCATGCGCTTTCCAT
CGGGAGTGATCTTGATCAGGTCCAACTGCTCCATGCTCTGGCGACGAACG
CGCACCATTCTTCCTTGCGAGTTCTCCGATCCATCCGACTGATTTCCGCT
GGCCGAGTGATCGGAGGCGGTGGATCGAGCCTCCTCCTCGGTGGGTGAAG
GCTCGGAGTCGGGCATTCCGAGTAGCTTTCGTAGATCGGAGATGTTCACC
CTGGCTGTGCTTTCACCCACCGGGTCGTGCAGCTCCTTTGCCAGTTGAAG
ATGCTGTTCCGC

BO10957.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:14:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG5692-PA 1977 raps-RA 1081..1974 912..19 4445 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:49:16
Subject Length Description Subject Range Query Range Score Percent Strand
pins-RA 3279 CG5692-RA 1329..2222 912..19 4455 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:49:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27584632..27585319 706..19 3440 100 Minus
3R 32079331 3R 27584168..27584376 912..704 1030 99.5 Minus
Blast to na_te.dros performed 2015-02-10 17:49:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2394..2427 76..43 134 88.2 Minus
roo 9092 roo DM_ROO 9092bp 1121..1163 76..35 131 81.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2313..2371 76..16 129 70.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6815..6850 76..41 117 80.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2442..2475 76..43 116 82.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6880..6923 86..43 112 72.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2790..2848 76..16 111 67.2 Minus
ZAM 8435 ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). 2641..2673 75..43 111 81.8 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2617..2654 78..41 109 76.3 Minus
gypsy11 4428 gypsy11 GYPSY11 4428bp 974..1020 77..31 109 70.2 Minus

BO10957.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:54:16 Download gff for BO10957.3prime
Subject Subject Range Query Range Percent Splice Strand
raps-PA 1081..1977 18..912 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:13:14 Download gff for BO10957.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5692-PA 1081..1977 18..912 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:23:39 Download gff for BO10957.3prime
Subject Subject Range Query Range Percent Splice Strand
raps-RA 1329..2222 19..912 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:00:14 Download gff for BO10957.3prime
Subject Subject Range Query Range Percent Splice Strand
pins-RA 1329..2222 19..912 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:00:14 Download gff for BO10957.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 27584168..27584374 706..912 99 -> Minus
3R 27584633..27585319 19..705 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:23:39 Download gff for BO10957.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23409890..23410096 706..912 99 -> Minus
arm_3R 23410355..23411041 19..705 100   Minus

BO10957.5prime Sequence

878 bp (848 high quality bases) assembled on 2006-04-19

> BO10957.5prime
GAAGTTATCAGTCGACATGTCCTCGCTCTCTGCGTCCGCGGAGAATGTGT
CCAGTTTGGGACTGGGATCGGGCGGAGGAGGAACTACTTCCCACGACGGC
AACTCCCAGCAGGGTTCCGGATCCGACGGAGGATCCAGTATGTGCCTGGA
ACTGGCCCTCGAGGGTGAACGCCTCTGCAAGGCGGGTGACTGCCGGGCGG
GCGTGGCCTTCTTCCAGGCGGCCATTCAGGCCGGAACCGAGGATCTTCGC
ACTCTGTCCGCCATCTACTCCCAGCTGGGCAACGCCTACTTCTACCTAGG
CGACTACAACAAGGCGATGCAGTACCACAAACACGATCTTACGCTGGCCA
AGAGCATGAACGACCGACTGGGCGAGGCCAAGTCCTCTGGCAATCTGGGC
AACACCCTCAAGGTAATGGGTCGCTTCGACGAGGCGGCCATCTGTTGCGA
GAGGCACCTAACGCTGGCCAGGCAGCTGGGAGATCGTCTGTCCGAGGGAC
GCGCTCTTTACAACCTAGGAAATGTCTACCACGCCAAGGGCAAGCACTTG
GGTCAGAGAAACCCTGGAAAGTTCGGCGACGATGTCAAGGAGGCGCTCAC
CCGTGCCGTGGAGTTTTACCAGGAGAATCTGAAGCTCATGCGGGATCTGG
GTGATCGTGGTGCTCAAGGTCGAGCTTGTGGTAATCTGGGAAATACCTAC
TACCTACTAGGCGATTTCCAAGCGGCCATTGAGCATCATCAGGAGCGACT
GCGCATTGCCAGAGAGTTTGGTGATCGCGCGGCTGAGCGAAGGGCCAACA
GTAATCTTGGCAACTCGCACATATTCCTGGGACAATTCGAGGACGCCGCC
GAACACTACAAACGCACCTTGGCTTTGG

BO10957.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:14:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG5692-PA 1977 raps-RA 1..862 17..878 4310 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:33:57
Subject Length Description Subject Range Query Range Score Percent Strand
pins-RA 3279 CG5692-RA 249..1110 17..878 4310 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:33:53
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27583088..27583949 17..878 4310 100 Plus
Blast to na_te.dros performed on 2015-02-12 01:33:55 has no hits.

BO10957.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:54:17 Download gff for BO10957.5prime
Subject Subject Range Query Range Percent Splice Strand
raps-PA 1..862 17..878 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:13:15 Download gff for BO10957.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5692-PA 1..862 17..878 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:21:13 Download gff for BO10957.5prime
Subject Subject Range Query Range Percent Splice Strand
raps-RA 238..1110 5..878 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:30:06 Download gff for BO10957.5prime
Subject Subject Range Query Range Percent Splice Strand
pins-RA 238..1110 5..878 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:30:06 Download gff for BO10957.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 27583077..27583949 5..878 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:21:13 Download gff for BO10957.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23408799..23409671 5..878 99   Plus

BO10957.complete Sequence

2008 bp assembled on 2007-11-30

GenBank Submission: FJ631937

> BO10957.complete
GAAGTTATCAGTCGACATGTCCTCGCTCTCTGCGTCCGCGGAGAATGTGT
CCAGTTTGGGACTGGGATCGGGCGGAGGAGGAACTACTTCCCACGACGGC
AACTCCCAGCAGGGTTCCGGATCCGACGGAGGATCCAGTATGTGCCTGGA
ACTGGCCCTCGAGGGTGAACGCCTCTGCAAGGCGGGTGACTGCCGGGCGG
GCGTGGCCTTCTTCCAGGCGGCCATTCAGGCCGGAACCGAGGATCTTCGC
ACTCTGTCCGCCATCTACTCCCAGCTGGGCAACGCCTACTTCTACCTAGG
CGACTACAACAAGGCGATGCAGTACCACAAACACGATCTTACGCTGGCCA
AGAGCATGAACGACCGACTGGGCGAGGCCAAGTCCTCTGGCAATCTGGGC
AACACCCTCAAGGTAATGGGTCGCTTCGACGAGGCGGCCATCTGTTGCGA
GAGGCACCTAACGCTGGCCAGGCAGCTGGGAGATCGTCTGTCCGAGGGAC
GCGCTCTTTACAACCTAGGAAATGTCTACCACGCCAAGGGCAAGCACTTG
GGTCAGAGAAACCCTGGAAAGTTCGGCGACGATGTCAAGGAGGCGCTCAC
CCGTGCCGTGGAGTTTTACCAGGAGAATCTGAAGCTCATGCGGGATCTGG
GTGATCGTGGTGCTCAAGGTCGAGCTTGTGGTAATCTGGGAAATACCTAC
TACCTACTAGGCGATTTCCAAGCGGCCATTGAGCATCATCAGGAGCGACT
GCGCATTGCCAGAGAGTTTGGTGATCGCGCGGCTGAGCGAAGGGCCAACA
GTAATCTTGGCAACTCGCACATATTCCTGGGACAATTCGAGGACGCCGCC
GAACACTACAAACGCACCTTGGCTTTGGCCGTTGAGTTGGGTGAACGCGA
AGTGGAGGCCCAGAGTTGCTACAGCTTGGGCAACACCTACACGTTGCTGC
ACGAGTTCAACACTGCCATCGAGTATCACAATCGACACTTGGCCATTGCC
CAGGAGTTGGGCGATCGAATTGGTGAGGCCAGGGCCTGCTGGTCACTGGG
CAATGCCCACTCTGCCATCGGTGGTCATGAGCGGGCCCTAAAGTATGCGG
AACAGCATCTTCAACTGGCCAAGGAGCTGCACGACCCGGTGGGTGAAAGC
ACAGCCAGGGTGAACATCTCCGATCTACGAAAGCTACTCGGAATGCCCGA
CTCCGAGCCTTCACCCACCGAGGAGGAGGCTCGATCCACCGCCTCCGATC
ACTCGGCCAGCGGAAATCAGTCGGATGGATCGGAGAACTCGCAAGGAAGA
ATGGTGCGCGTTCGTCGCCAGAGCATGGAGCAGTTGGACCTGATCAAGAT
CACTCCCGATGGAAAGCGCATGCAGGAGGAAAAGCTACGAGCACAGGCGA
CCAGGAAAGCCAAAGACGACGACTTTTTCGAGATGCTTTCGCGGTCGCAG
TCGAAGCGCATGGATGACCAGCGCTGTTCGATCAAGGTGAATCCCGCCGG
AGCTCCGGCGGTGGCCACTGGCGCCACGCGTAAGCCGCTTGTGCAGCAGA
ACTCGTTGTTCGTGGATCCCACCAACCTGCCTGGCCTCAAGTCACCGTCG
TCGGCGAATCCATCAGCCATTGGACATGGGCCGCTCGCCAGGAGCGCCAC
CACTACGCAGCAGCCCGATGATGACTTCCTAGACATGCTTATGCGCTGCC
AAGGCTCGCGTCTGGAGGAGCAGCGGTCCGAGTTACCGCGCCCCAATGTC
ACCATGGACGCAGAGGCGGAGGCACCACCGCGATCCGTCCCAGAGGCTGC
TGTTCCAGGGGCACCACGCGGACAGACCGGACGTGGAGCTACCGTCCCCG
ATGAGGACTTCTTCTCACTGATCATGAAGGTCCAGAGCGGTCGCATGGAG
GATCAGCGCGCCTCGATTCCGTTCCGAAATGCCAACAATAACAACAATAG
CCGCAGCAACAACAACGGTTCAGCCGGCGGAGCTGGAAAGGCAAGCTTTC
TAGACCAT

BO10957.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:26:27
Subject Length Description Subject Range Query Range Score Percent Strand
pins-RA 1977 CG5692-PA 1..1974 17..1990 9870 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:26:28
Subject Length Description Subject Range Query Range Score Percent Strand
pins-RA 3279 CG5692-RA 249..2222 17..1990 9870 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:26:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27583088..27584376 17..1305 6445 100 Plus
3R 32079331 3R 27584632..27585319 1303..1990 3440 100 Plus
Blast to na_te.dros performed 2014-11-27 07:26:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2394..2427 1933..1966 134 88.2 Plus
roo 9092 roo DM_ROO 9092bp 1121..1163 1933..1974 131 81.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2313..2371 1933..1993 129 70.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6815..6850 1933..1968 117 80.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2442..2475 1933..1966 116 82.4 Plus

BO10957.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:57:00 Download gff for BO10957.complete
Subject Subject Range Query Range Percent Splice Strand
raps-RA 1..1977 17..1991 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:07:53 Download gff for BO10957.complete
Subject Subject Range Query Range Percent Splice Strand
raps-RA 273..2257 5..1990 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:15:09 Download gff for BO10957.complete
Subject Subject Range Query Range Percent Splice Strand
raps-RA 249..2222 17..1992 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:36:55 Download gff for BO10957.complete
Subject Subject Range Query Range Percent Splice Strand
raps-RA 284..2257 17..1992 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:10:37 Download gff for BO10957.complete
Subject Subject Range Query Range Percent Splice Strand
pins-RA 249..2222 17..1992 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:10:37 Download gff for BO10957.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27583088..27584374 17..1303 100 -> Plus
3R 27584633..27585319 1304..1992 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:15:09 Download gff for BO10957.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23408810..23410096 17..1303 100 -> Plus
arm_3R 23410355..23411041 1304..1992 99   Plus

BO10957.pep Sequence

Translation from 16 to 2008

> BO10957.pep
MSSLSASAENVSSLGLGSGGGGTTSHDGNSQQGSGSDGGSSMCLELALEG
ERLCKAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKA
MQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTL
ARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF
YQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIARE
FGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQS
CYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSA
IGGHERALKYAEQHLQLAKELHDPVGESTARVNISDLRKLLGMPDSEPSP
TEEEARSTASDHSASGNQSDGSENSQGRMVRVRRQSMEQLDLIKITPDGK
RMQEEKLRAQATRKAKDDDFFEMLSRSQSKRMDDQRCSIKVNPAGAPAVA
TGATRKPLVQQNSLFVDPTNLPGLKSPSSANPSAIGHGPLARSATTTQQP
DDDFLDMLMRCQGSRLEEQRSELPRPNVTMDAEAEAPPRSVPEAAVPGAP
RGQTGRGATVPDEDFFSLIMKVQSGRMEDQRASIPFRNANNNNNSRSNNN
GSAGGAGKASFLDH

BO10957.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:01:45
Subject Length Description Subject Range Query Range Score Percent Strand
pins-PA 658 CG5692-PA 1..658 1..658 3401 100 Plus
CG43163-PC 2523 CG43163-PC 210..535 50..392 482 32.4 Plus
CG43163-PD 2523 CG43163-PD 210..535 50..392 482 32.4 Plus
CG43163-PC 2523 CG43163-PC 404..695 84..392 416 32 Plus
CG43163-PD 2523 CG43163-PD 404..695 84..392 416 32 Plus
CG43163-PC 2523 CG43163-PC 534..851 56..388 412 33.1 Plus
CG43163-PD 2523 CG43163-PD 534..851 56..388 412 33.1 Plus
CG43163-PC 2523 CG43163-PC 441..730 81..387 395 31.3 Plus
CG43163-PD 2523 CG43163-PD 441..730 81..387 395 31.3 Plus
CG43163-PC 2523 CG43163-PC 836..1171 45..388 313 27.5 Plus
CG43163-PD 2523 CG43163-PD 836..1171 45..388 313 27.5 Plus
CG43163-PC 2523 CG43163-PC 728..1126 50..460 293 25.1 Plus
CG43163-PD 2523 CG43163-PD 728..1126 50..460 293 25.1 Plus