Clone Sequence Records
BO10957.3prime Sequence
912 bp (790 high quality bases) assembled on 2006-04-19
> BO10957.3prime
ATGGTCTAGAAAGCTTGCCTTTCCAGCTCCGCCGGCTGAACCGTTGTTGT
TGCTGCGGCTATTGTTGTTATTGTTGGCATTTCGGAACGGAATCGAGGCG
CGCTGATCCTCCATGCGACCGCTCTGGACCTTCATGATCAGTGAGAAGAA
GTCCTCATCGGGGACGGTAGCTCCACGTCCGGTCTGTCCGCGTGGTGCCC
CTGGAACAGCAGCCTCTGGGACGGATCGCGGTGGTGCCTCCGCCTCTGCG
TCCATGGTGACATTGGGGCGCGGTAACTCGGACCGCTGCTCCTCCAGACG
CGAGCCTTGGCAGCGCATAAGCATGTCTAGGAAGTCATCATCGGGCTGCT
GCGTAGTGGTGGCGCTCCTGGCGAGCGGCCCATGTCCAATGGCTGATGGA
TTCGCCGACGACGGTGACTTGAGGCCAGGCAGGTTGGTGGGATCCACGAA
CAACGAGTTCTGCTGCACAAGCGGCTTACGCGTGGCGCCAGTGGCCACCG
CCGGAGCTCCGGCGGGATTCACCTTGATCGAACAGCGCTGGTCATCCATG
CGCTTCGACTGCGACCGCGAAAGCATCTCGAAAAAGTCGTCGTCTTTGGC
TTTCCTGGTCGCCTGTGCTCGTAGCTTTTCCTCCTGCATGCGCTTTCCAT
CGGGAGTGATCTTGATCAGGTCCAACTGCTCCATGCTCTGGCGACGAACG
CGCACCATTCTTCCTTGCGAGTTCTCCGATCCATCCGACTGATTTCCGCT
GGCCGAGTGATCGGAGGCGGTGGATCGAGCCTCCTCCTCGGTGGGTGAAG
GCTCGGAGTCGGGCATTCCGAGTAGCTTTCGTAGATCGGAGATGTTCACC
CTGGCTGTGCTTTCACCCACCGGGTCGTGCAGCTCCTTTGCCAGTTGAAG
ATGCTGTTCCGC
BO10957.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:14:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5692-PA | 1977 | raps-RA | 1081..1974 | 912..19 | 4445 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:49:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pins-RA | 3279 | CG5692-RA | 1329..2222 | 912..19 | 4455 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:49:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27584632..27585319 | 706..19 | 3440 | 100 | Minus |
3R | 32079331 | 3R | 27584168..27584376 | 912..704 | 1030 | 99.5 | Minus |
Blast to na_te.dros performed 2015-02-10 17:49:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2394..2427 | 76..43 | 134 | 88.2 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 1121..1163 | 76..35 | 131 | 81.4 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2313..2371 | 76..16 | 129 | 70.5 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6815..6850 | 76..41 | 117 | 80.6 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2442..2475 | 76..43 | 116 | 82.4 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6880..6923 | 86..43 | 112 | 72.7 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2790..2848 | 76..16 | 111 | 67.2 | Minus |
ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 2641..2673 | 75..43 | 111 | 81.8 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2617..2654 | 78..41 | 109 | 76.3 | Minus |
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 974..1020 | 77..31 | 109 | 70.2 | Minus |
BO10957.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:54:16 Download gff for
BO10957.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
raps-PA | 1081..1977 | 18..912 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:13:14 Download gff for
BO10957.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5692-PA | 1081..1977 | 18..912 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:23:39 Download gff for
BO10957.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
raps-RA | 1329..2222 | 19..912 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:00:14 Download gff for
BO10957.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pins-RA | 1329..2222 | 19..912 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:00:14 Download gff for
BO10957.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27584168..27584374 | 706..912 | 99 | -> | Minus |
3R | 27584633..27585319 | 19..705 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:23:39 Download gff for
BO10957.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23409890..23410096 | 706..912 | 99 | -> | Minus |
arm_3R | 23410355..23411041 | 19..705 | 100 | | Minus |
BO10957.5prime Sequence
878 bp (848 high quality bases) assembled on 2006-04-19
> BO10957.5prime
GAAGTTATCAGTCGACATGTCCTCGCTCTCTGCGTCCGCGGAGAATGTGT
CCAGTTTGGGACTGGGATCGGGCGGAGGAGGAACTACTTCCCACGACGGC
AACTCCCAGCAGGGTTCCGGATCCGACGGAGGATCCAGTATGTGCCTGGA
ACTGGCCCTCGAGGGTGAACGCCTCTGCAAGGCGGGTGACTGCCGGGCGG
GCGTGGCCTTCTTCCAGGCGGCCATTCAGGCCGGAACCGAGGATCTTCGC
ACTCTGTCCGCCATCTACTCCCAGCTGGGCAACGCCTACTTCTACCTAGG
CGACTACAACAAGGCGATGCAGTACCACAAACACGATCTTACGCTGGCCA
AGAGCATGAACGACCGACTGGGCGAGGCCAAGTCCTCTGGCAATCTGGGC
AACACCCTCAAGGTAATGGGTCGCTTCGACGAGGCGGCCATCTGTTGCGA
GAGGCACCTAACGCTGGCCAGGCAGCTGGGAGATCGTCTGTCCGAGGGAC
GCGCTCTTTACAACCTAGGAAATGTCTACCACGCCAAGGGCAAGCACTTG
GGTCAGAGAAACCCTGGAAAGTTCGGCGACGATGTCAAGGAGGCGCTCAC
CCGTGCCGTGGAGTTTTACCAGGAGAATCTGAAGCTCATGCGGGATCTGG
GTGATCGTGGTGCTCAAGGTCGAGCTTGTGGTAATCTGGGAAATACCTAC
TACCTACTAGGCGATTTCCAAGCGGCCATTGAGCATCATCAGGAGCGACT
GCGCATTGCCAGAGAGTTTGGTGATCGCGCGGCTGAGCGAAGGGCCAACA
GTAATCTTGGCAACTCGCACATATTCCTGGGACAATTCGAGGACGCCGCC
GAACACTACAAACGCACCTTGGCTTTGG
BO10957.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:14:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5692-PA | 1977 | raps-RA | 1..862 | 17..878 | 4310 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:33:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pins-RA | 3279 | CG5692-RA | 249..1110 | 17..878 | 4310 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:33:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27583088..27583949 | 17..878 | 4310 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:33:55 has no hits.
BO10957.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:54:17 Download gff for
BO10957.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
raps-PA | 1..862 | 17..878 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:13:15 Download gff for
BO10957.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5692-PA | 1..862 | 17..878 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:21:13 Download gff for
BO10957.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
raps-RA | 238..1110 | 5..878 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:30:06 Download gff for
BO10957.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pins-RA | 238..1110 | 5..878 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:30:06 Download gff for
BO10957.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27583077..27583949 | 5..878 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:21:13 Download gff for
BO10957.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23408799..23409671 | 5..878 | 99 | | Plus |
BO10957.complete Sequence
2008 bp assembled on 2007-11-30
GenBank Submission: FJ631937
> BO10957.complete
GAAGTTATCAGTCGACATGTCCTCGCTCTCTGCGTCCGCGGAGAATGTGT
CCAGTTTGGGACTGGGATCGGGCGGAGGAGGAACTACTTCCCACGACGGC
AACTCCCAGCAGGGTTCCGGATCCGACGGAGGATCCAGTATGTGCCTGGA
ACTGGCCCTCGAGGGTGAACGCCTCTGCAAGGCGGGTGACTGCCGGGCGG
GCGTGGCCTTCTTCCAGGCGGCCATTCAGGCCGGAACCGAGGATCTTCGC
ACTCTGTCCGCCATCTACTCCCAGCTGGGCAACGCCTACTTCTACCTAGG
CGACTACAACAAGGCGATGCAGTACCACAAACACGATCTTACGCTGGCCA
AGAGCATGAACGACCGACTGGGCGAGGCCAAGTCCTCTGGCAATCTGGGC
AACACCCTCAAGGTAATGGGTCGCTTCGACGAGGCGGCCATCTGTTGCGA
GAGGCACCTAACGCTGGCCAGGCAGCTGGGAGATCGTCTGTCCGAGGGAC
GCGCTCTTTACAACCTAGGAAATGTCTACCACGCCAAGGGCAAGCACTTG
GGTCAGAGAAACCCTGGAAAGTTCGGCGACGATGTCAAGGAGGCGCTCAC
CCGTGCCGTGGAGTTTTACCAGGAGAATCTGAAGCTCATGCGGGATCTGG
GTGATCGTGGTGCTCAAGGTCGAGCTTGTGGTAATCTGGGAAATACCTAC
TACCTACTAGGCGATTTCCAAGCGGCCATTGAGCATCATCAGGAGCGACT
GCGCATTGCCAGAGAGTTTGGTGATCGCGCGGCTGAGCGAAGGGCCAACA
GTAATCTTGGCAACTCGCACATATTCCTGGGACAATTCGAGGACGCCGCC
GAACACTACAAACGCACCTTGGCTTTGGCCGTTGAGTTGGGTGAACGCGA
AGTGGAGGCCCAGAGTTGCTACAGCTTGGGCAACACCTACACGTTGCTGC
ACGAGTTCAACACTGCCATCGAGTATCACAATCGACACTTGGCCATTGCC
CAGGAGTTGGGCGATCGAATTGGTGAGGCCAGGGCCTGCTGGTCACTGGG
CAATGCCCACTCTGCCATCGGTGGTCATGAGCGGGCCCTAAAGTATGCGG
AACAGCATCTTCAACTGGCCAAGGAGCTGCACGACCCGGTGGGTGAAAGC
ACAGCCAGGGTGAACATCTCCGATCTACGAAAGCTACTCGGAATGCCCGA
CTCCGAGCCTTCACCCACCGAGGAGGAGGCTCGATCCACCGCCTCCGATC
ACTCGGCCAGCGGAAATCAGTCGGATGGATCGGAGAACTCGCAAGGAAGA
ATGGTGCGCGTTCGTCGCCAGAGCATGGAGCAGTTGGACCTGATCAAGAT
CACTCCCGATGGAAAGCGCATGCAGGAGGAAAAGCTACGAGCACAGGCGA
CCAGGAAAGCCAAAGACGACGACTTTTTCGAGATGCTTTCGCGGTCGCAG
TCGAAGCGCATGGATGACCAGCGCTGTTCGATCAAGGTGAATCCCGCCGG
AGCTCCGGCGGTGGCCACTGGCGCCACGCGTAAGCCGCTTGTGCAGCAGA
ACTCGTTGTTCGTGGATCCCACCAACCTGCCTGGCCTCAAGTCACCGTCG
TCGGCGAATCCATCAGCCATTGGACATGGGCCGCTCGCCAGGAGCGCCAC
CACTACGCAGCAGCCCGATGATGACTTCCTAGACATGCTTATGCGCTGCC
AAGGCTCGCGTCTGGAGGAGCAGCGGTCCGAGTTACCGCGCCCCAATGTC
ACCATGGACGCAGAGGCGGAGGCACCACCGCGATCCGTCCCAGAGGCTGC
TGTTCCAGGGGCACCACGCGGACAGACCGGACGTGGAGCTACCGTCCCCG
ATGAGGACTTCTTCTCACTGATCATGAAGGTCCAGAGCGGTCGCATGGAG
GATCAGCGCGCCTCGATTCCGTTCCGAAATGCCAACAATAACAACAATAG
CCGCAGCAACAACAACGGTTCAGCCGGCGGAGCTGGAAAGGCAAGCTTTC
TAGACCAT
BO10957.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:26:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pins-RA | 1977 | CG5692-PA | 1..1974 | 17..1990 | 9870 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:26:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pins-RA | 3279 | CG5692-RA | 249..2222 | 17..1990 | 9870 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:26:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27583088..27584376 | 17..1305 | 6445 | 100 | Plus |
3R | 32079331 | 3R | 27584632..27585319 | 1303..1990 | 3440 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 07:26:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2394..2427 | 1933..1966 | 134 | 88.2 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1121..1163 | 1933..1974 | 131 | 81.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2313..2371 | 1933..1993 | 129 | 70.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6815..6850 | 1933..1968 | 117 | 80.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2442..2475 | 1933..1966 | 116 | 82.4 | Plus |
BO10957.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:57:00 Download gff for
BO10957.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
raps-RA | 1..1977 | 17..1991 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:07:53 Download gff for
BO10957.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
raps-RA | 273..2257 | 5..1990 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:15:09 Download gff for
BO10957.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
raps-RA | 249..2222 | 17..1992 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:36:55 Download gff for
BO10957.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
raps-RA | 284..2257 | 17..1992 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:10:37 Download gff for
BO10957.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pins-RA | 249..2222 | 17..1992 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:10:37 Download gff for
BO10957.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27583088..27584374 | 17..1303 | 100 | -> | Plus |
3R | 27584633..27585319 | 1304..1992 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:15:09 Download gff for
BO10957.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23408810..23410096 | 17..1303 | 100 | -> | Plus |
arm_3R | 23410355..23411041 | 1304..1992 | 99 | | Plus |
BO10957.pep Sequence
Translation from 16 to 2008
> BO10957.pep
MSSLSASAENVSSLGLGSGGGGTTSHDGNSQQGSGSDGGSSMCLELALEG
ERLCKAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKA
MQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTL
ARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF
YQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIARE
FGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQS
CYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSA
IGGHERALKYAEQHLQLAKELHDPVGESTARVNISDLRKLLGMPDSEPSP
TEEEARSTASDHSASGNQSDGSENSQGRMVRVRRQSMEQLDLIKITPDGK
RMQEEKLRAQATRKAKDDDFFEMLSRSQSKRMDDQRCSIKVNPAGAPAVA
TGATRKPLVQQNSLFVDPTNLPGLKSPSSANPSAIGHGPLARSATTTQQP
DDDFLDMLMRCQGSRLEEQRSELPRPNVTMDAEAEAPPRSVPEAAVPGAP
RGQTGRGATVPDEDFFSLIMKVQSGRMEDQRASIPFRNANNNNNSRSNNN
GSAGGAGKASFLDH
BO10957.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:01:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pins-PA | 658 | CG5692-PA | 1..658 | 1..658 | 3401 | 100 | Plus |
CG43163-PC | 2523 | CG43163-PC | 210..535 | 50..392 | 482 | 32.4 | Plus |
CG43163-PD | 2523 | CG43163-PD | 210..535 | 50..392 | 482 | 32.4 | Plus |
CG43163-PC | 2523 | CG43163-PC | 404..695 | 84..392 | 416 | 32 | Plus |
CG43163-PD | 2523 | CG43163-PD | 404..695 | 84..392 | 416 | 32 | Plus |
CG43163-PC | 2523 | CG43163-PC | 534..851 | 56..388 | 412 | 33.1 | Plus |
CG43163-PD | 2523 | CG43163-PD | 534..851 | 56..388 | 412 | 33.1 | Plus |
CG43163-PC | 2523 | CG43163-PC | 441..730 | 81..387 | 395 | 31.3 | Plus |
CG43163-PD | 2523 | CG43163-PD | 441..730 | 81..387 | 395 | 31.3 | Plus |
CG43163-PC | 2523 | CG43163-PC | 836..1171 | 45..388 | 313 | 27.5 | Plus |
CG43163-PD | 2523 | CG43163-PD | 836..1171 | 45..388 | 313 | 27.5 | Plus |
CG43163-PC | 2523 | CG43163-PC | 728..1126 | 50..460 | 293 | 25.1 | Plus |
CG43163-PD | 2523 | CG43163-PD | 728..1126 | 50..460 | 293 | 25.1 | Plus |